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2015 Abstracts

An Environmental Reconstruction of Lake Channel, Idaho, from Microfaunal Remains

January 01, 2015 12:00 AM
Madalyn Page, Brandi Allred, and David Byers, Utah State University Social and Behavioral Sciences Relative abundances of small mammals often monitor environmental conditions due to these animals’ high sensitivity to climatic fluctuations. In this study, we document small mammal remains recovered from recently deposited owl pellets collected in Lake Channel, Idaho, located on the Snake River Plain. These pellets were dissected and cataloged according to diagnostic and non-diagnostic osteological characteristics. Following standard procedure, we used the crania and mandibles for MNI calculations, as well as species-level identification of small mammals. After identifying the small mammals down to species level, we compared our results to a habitat profile that suggests the microfaunal remains occupy both xeric and mesic habitats. These results remain consistent with the present day dune and riparian environments found in Lake Channel. Further analyses will compare this present day base-line climatic model to recently excavated small mammal assemblages documenting ancient Lake Channel climates.

Warzone Stressor Exposure, Unit Support, and Emotional Distress among U.S. Air Force Pararescuemen

January 01, 2015 12:00 AM
Erica Armstrong, University of Utah Social and Behavioral Sciences Combat exposure is associated with increased mental health symptom severity among military personnel, whereas unit cohesion is associated with decreased severity. However, to date no studies have examined these relationships among U.S. Air Force pararescuemen, a unique and specialized career field that serves in both medical and combatant capacities. Self-report survey data regarding depression symptoms, post-traumatic stress (PTSD) symptoms, perceived unit support, and exposure to traditional combat experiences (e.g., firefights) and medical-related consequences of combat (e.g., injuries and human remains) were collected from 194 pararescuemen from seven rescue squadrons. Levels of combat exposure were comparable to previously-published findings from combat units, and levels of medical exposure were comparable to previously-published findings among military medical professionals. Medical exposure intensity showed a stronger relationship with PTSD severity (β = .365, p = .018) than combat exposure intensity (β = .136, p = .373), but neither combat nor medical exposure was associated with depression severity (β’s < .296, p’s > .164). Unit support was associated with less severe PTSD (β = -.402, p < .001) and depression (β = -.259, p = .062) symptoms and did not moderate the effects of combat or medical exposure. Medical-related stressors contribute more to PTSD among pararescuemen than traditional combat-related stressors. Unit support is associated with reduced PTSD and depression severity regardless of intensity of warzone exposure among pararescuemen.

I Am What You Make of Me: Pregnancy Experience and Child Development

January 01, 2015 12:00 AM
RonJai Staton, Lyndsey Craig, Christy Fiscer, Michelle Hammon, Deborah Decker, Tina Boren, Zac Olson,

Social Environment Predicts Temperament of Infant Rhesus Macaques

January 01, 2015 12:00 AM
Stephen Anderson and Cat Stewart, Brigham Young University Social and Behavioral Sciences Research shows that infant temperament can serve as a predictor of childhood, adolescent, and to some extent, adult social behaviors. Because infant temperament is thought to be the foundation for personality and behavior, it is important to understand factors that influence the development of infant temperament. At the California National Primate Research Center (CNPRC), infant rhesus macaques undergo a bio-behavioral assessment used to evaluate temperament. Infants are evaluated on multiple behaviors, which are used to determine temperament ratings for temperaments such as confidence, gentleness, nervousness, and vigilance. We used data collected from over 2700 infant rhesus monkeys born at the CNPRC between the years of 2001 and 2012. Our goal was to measure whether infant temperament is modulated by “culture”, as measured by differences in the infant’s temperament stratified by home cage (a large open field cage that houses about 100 to 150 animals). Twenty-two cages were included in the analysis, with each cage housing from 25 to 210 infants .We hypothesized that based on difference in treatment between cages, infants would display temperaments related to cage culture. Our analysis showed that the cage social environment significantly predict infant temperament across each of the temperamental traits measured. Our findings suggest that social environment and culture influences temperament and likely predicts future behavior.

Counting Integer Points in Scaled Polytopes

January 01, 2015 12:00 AM
Christopher Vander Wilt and Daniel Gulbrandsen Utah Valley University Let nP denote the polytope obtained by expanding the convex integral polytope P⊂R^d by a factor of n in each dimension. Ehrhart [1] proved that the number of lattice (integer) points contained in nP is a rational polynomial of degree d in n. What happens if the polytope is expanded by not necessarily the same factor in each dimension? In this talk a partial answer to this question will be provided, using powers of n as different factors to expand the polytope. It will be shown that the number of lattice points contained in the polytope formed by expanding P by multiplying each vertex coordinate by such a factor is a quasi-polynomial in n. Quasi-polynomials are a generalization of polynomials, where the coefficients of the quasi-polynomials are periodic functions with integral period. Furthermore, particular cases where the number of such lattice points is a polynomial will be presented. In addition, the period of these quasi-polynomials as well as the Law of Reciprocity will be addressed. At the end, future work will be discussed. [1] E. Ehrhart, “Sur les Poly`edres Rationnels Homoth ´etiques `a n Dimensions,” C. R. Acad. Sci. Paris 254 (1962)

The Divisibility of p^(n)-1 for p>5, p a Prime Number

January 01, 2015 12:00 AM
Jason Adams, Nathan Jewkes and Tyrell Vance, Southern Utah University Mathematical Sciences We will study the divisibility of p^(n)-1 where p is a prime number larger than 5 and n is a positive integer. We will generalize the result by considering the case where n is odd and two cases where n is even. We show that when n=2^(k), k an integer greater than 1, 2^(k+2)∙3∙5 is a factor of p^(n)-1. We also show that when n=2^(m)∙l for m a positive integer greater than 1 and l an odd positive integer greater than 1, 2^(m+2)∙3∙5 is a factor of p^(n)-1.

Chernobyl and Fukushima

January 01, 2015 12:00 AM
Valerie Jacobson, Weber State University Physical Sciences This study will compare and contrast the differences between nuclear accidents in Chernobyl and Fukushima. The environmental impacts of the “fall-out” across the two differing landscapes and the displacement of the populations due to radiation contamination, e.g., soil contamination, will be analyzed. Research on health issues, such as the increased numbers of thyroid cancer cases in Ukraine and Belarus in those who were children at the time of the disaster in 1986, will also be reviewed and compared to current health issues in Fukushima. Certain weather patterns distributed the radioactive materials over specific geographic areas that later came to be known as “hot-spots.” The study will evaluate the evacuations handled by the respective governments and the “exclusion zone” measures put in place by each. While the nuclear disasters at Chernobyl and Fukushima have been compared as similar in disaster level, research and data collection of the fallout zones, or hot spots, reveal that the two disasters are not of an equal level. Factors such as air temperature, political and social responses all contributed to the disparity in levels of the two disasters.

A Plan for Complete Recycling of Stormwater on the Utah Valley University Main Campus, Orem, Utah

January 01, 2015 12:00 AM
Paul Robertson, Utah Valley University Physical Sciences Evaluation of Utah Valley University’s stormwater plan reveals a simple system meant to collect stormwater into the city storm drains as quickly as possible. It is, however, vastly underdeveloped and many unspectacular summer and springtime storms have resulted in property damage, including those of nearby residents. The stormwater runoff has also collected concentrated amounts of hydrocarbons, nitrogen and heavy metals which are being fed directly into Utah Lake, acting as a significant source of pollution for the lake environment. The intentions of this project are to design a stormwater management plan that can withstand a 100 year, 24 hour event and prevent pollutants from entering the Utah Lake system. Mapping and modeling of the University’s storm drains will be accomplished using GIS as well as modeling for efficient retention sites on campus. Captured stormwater will then be used for a variety of functions here on campus and runoff into the adjacent lake will be reduced to insignificant values. Decisions regarding the ultimate implementation of this project will work in concordance with the University’s master plan of future development in order to realistically secure a reliable, low-maintenance system.

Comparison of Macroinvertebrate Assemblages of Two Perennial Streams in Capitol Reef National Park

January 01, 2015 12:00 AM
Jake Loveless, Utah Valley University Life Sciences Macroinvertebrate assemblage composition was assessed in two perennial streams, Pleasant Creek, and Sulphur Creek in Capitol Reef National Park, Utah, during the summer of 2014. Individuals collected were identified to genus. This information was used to compare assemblage composition, nutrient availability, and water quality between the two streams. Five collection trips were made (May 27, June 10,17, July 1,15). Sampling was conducted randomly using mesh kick nets with four samples being collected per site, per trip. Heavy rains caused flash flooding on July 15 prohibiting sampling, so a total of sixteen samples per site were taken. Samples were stored in 90% isopropyl alcohol until they could besorted and identified using a dissecting microscope. Water quality estimates were determined by taking the weighted average of the tolerance values, and the final classification was made using the family-level biotic index. Pleasant Creek showed the highest number of taxa present, fourteen, compared to six in Sulphur Creek. Both streams followed the predictions of the River Continuum Concept consisting of collector-dominated functional feeding groups, with Pleasant Creek showing a higher percentage of predators 35.7% to 16.6%. Tolerance values of collected taxa were used to estimate organic pollution indicating good water quality in Pleasant Creek, and fairly poor water quality in Sulphur Creek. The differences in the macroinvertebrate assemblage composition in this study were likely multi-causal. Stream size is a major factor influencing the structure of macroinvertebrate assemblages; in general, as stream size increases, more taxa are added. Pleasant Creek is a much larger stream with a well-established channel, while Sulphur Creek is shallow with depths never exceeding fifteen centimeters. The shallow channel of Sulphur Creek also made it prone to frequent flooding. Isolated floods have little impact on macroinvertebrate communities due to availability of aerial adults nearby to recolonize rapidly, however, frequent flooding may have long-term effects through extirpation of taxa with high mortality. The difference in water quality was the most surprising finding in this study. The fairly poor water quality of Sulphur Creek may also be a factor in the lack of genera found there. Organic pollution effects primary productivity in streams, and while primary productivity was not measured in this study, visual observations found very little algae or aquatic vegetation at Sulphur Creek.

Species List of Insects in Capitol Reef National P ark

January 01, 2015 12:00 AM
Robert Erickson, Utah Valley University Life Sciences Although the insect fauna of the Colorado Plateau region are somewhat well known, our specific understanding of the arthropod biodiversity in Capitol Reef National Park has been sparse. Objective: From the multiple insect surveys conducted in Capitol Reef National Park we intend to catalog the arthropod biodiversity into a species list. Methods: In addition to the previous collecting trips, we carried out collection efforts this past summer (2014). We used the Utah Valley University Capitol Reef Field Station as our home base. General insect collecting efforts were conducted around the field station and the nearby Pleasant Creek, near the public campgrounds, along trails, and in several other locations in the southern portion of the park. Additionally, we performed night collecting with a mercury vapor lamp trap on the nights we were in the park and utilized stationary malaise and aquatic larvae traps. The collected specimens were curated using methods of pinning, spreading, labeling, identifying, photographing, and organizing the insects. Results: The collections contributed to an increased understanding of the parks insect diversity and resulted in a curated natural history museum collection. A species list will be made available for the records of Capitol Reef National Park. More than 3000 specimens have been collected within the park. Furthermore, a booklet of the common insects for the park is in the process of being created in order to serve as an educational tool for visitors to the park and field station.

The Role of PAS Kinase and Cbf1 in Glucose Metabolism

January 01, 2015 12:00 AM
Jenny Pattison, Brigham Young University Life Sciences Sensory protein kinases are essential in the phosphorylation of many protein substrates, allowing them to control several metabolic functions and maintain cellular homeostasis. PAS kinase is a sensory protein kinase that is highly conserved and plays a crucial role in glucose homeostasis, however little is known about the molecular mechanisms behind its function. UGP1 is the only well-characterized substrate of PAS kinase, and its phosphorylation diverts glucose away from storage and towards cell wall biosynthesis. We have recently discovered another key substrate of PAS kinase that affects glucose metabolism in the cell, Centromere binding factor 1 (Cbf1). Cbf1 regulates genes involved in respiration, and we have shown that the phosphorylation of Cbf1 by PAS kinase inhibits Cbf1, decreasing respiration in yeast cells. We hypothesize that this is due to a decrease in mitochondrial mass in cbf1 deficient yeast. Further characterizing the effects of PAS kinase on Cbf1 will give further insight into how cells regulate their central metabolic functions, including respiration.

The Effects of Umbellularia Californica Essential Oil on the Cutaneous Vasculature of Frogs

January 01, 2015 12:00 AM
Stephan Maman and Holden Wagstaff, Southern Utah University Life Sciences Most plant species produce chemical compounds called secondary metabolites that enhance fitness in a variety of ways. Many of these compounds are also physiologically active in vertebrates and have widespread medicinal uses. The most ubiquitous secondary metabolites are the terpenoids, many of which cause vasodilation of the aorta and mesenteric arteries. In this study, we examined the vasoactive effects of the essential oil of Umbellularia californica, which contains the terpenoid umbellulone. Oil obtained via steam distillation using aerial portions of U. californica was applied directly to cutaneous arterioles of frogs. Arteriole diameter was monitored both before and after oil application by video microscopy. Within seconds of application, the oil caused significant vasoconstriction that persisted until the oil was washed off. Our control, medical grade sesame oil, caused no observable effects when applied using the same protocols. These results are opposite to the vasodilatory effects of terpenoids on aortic rings and mesenteric arteries. This suggests that the vasoactive effects of umbellulone are different from other terpenoids, that the vasoactive effects of terpenoids differ depending on blood vessel type, or that application of the complete essential oil affects vasculature differently than application of the isolated terpenoid.

Ventral Tegmental Area Dopamine and GABA Neurons: Physiological Properties and Expression of Mrna for Endocannabinoid Biosynthetic Enzymes and Type I Mglurs

January 01, 2015 12:00 AM
Scott Newton, Brigham Young University Life Sciences The ventral tegmental area (VTA) is known to controls the processing of rewarding and addictive behaviors. The VTA contains dopamine (DA) cells, which release DA to downstream targets in response to rewarding stimuli, and GABA cells, which modulate DA cell activity. Therefore, both cell types are involved in associative reward learning. Synaptic plasticity plays an important role in adaptive reward signaling within the VTA. Endocannabinoids mediate or modulate synaptic plasticity at synapses within the reward circuit. However, the source of endocannabinoids within the VTA is not well understood. Therefore, our goal was to describe the distribution of endocannabinoid biosynthetic enzyme mRNA within VTA neurons. We extracted single VTA neurons via whole cell patch clamp and used single-cell real-time quantitative PCR to identify DA and GABA neurons based on mRNA expression of cell-type specific targets. Additionally, electrophysiological properties such as action potential frequency and sag potential amplitude were examined between the two cell types. Concurrent with established observations, slower firing frequencies were observed in DAergic neurons, however overlap was identified between these two cell types. VTA neurons were then probed for endocannabinoid/ biosynthetic enzyme mRNA, such as N-acyl-phosphatidylethanolamine-specific phospholipase D (NAPE- PLD), diacylglycerol lipase α (DAGLα), and 12-lipoxygenase. We also probed for type I metabotropic glutamate receptor (mGluR) mRNA, as endocannabinoid synthesis requires mGluR activation. Our data demonstrate that endocannabinoid biosynthetic enzyme mRNA is expressed in both DAergic and GABAergic cells with concurrent expression of type I mGluRs. Next, to ensure mRNA expression was representative of protein content, slices were stained using immunohistochemistry for GAD67, DAGLα, NAPE-PLD and type I mGluRs. Positive labeling for these targets was observed in VTA neurons, supporting our RT-PCR results. Collectively, these data suggest DAergic and GABAergic cells of the VTA have the capability to produce endocannabinoids and potentially alter synaptic plasticity involved in reward and addiction.

Aurora Kinase A is Critical for the Nkx6.1 Mediated Β-Cell Proliferation Pathway

January 01, 2015 12:00 AM
Amanda Hobson, Carrie Draney, Andrew Stratford, Thomas Becker, Danhong Lu, Michelle Arlotto,

Is There a Correlation between Skin Temperature and Chytrid Survival on Hyla Arenicolor?

January 01, 2015 12:00 AM
Brent Knoblauch and Marty Larsen, Dixie State University Life Sciences Chytrid fungus (Batrachochytrium dendrobatidis) is one of the major hypothesized theories behind global amphibian decline. Canyon Tree frogs (Hyla arenicolor) found in Zion National Park have been found to contain infected individuals, however population sizes have grown despite infection with the usually deadly fungus. The present study sought to demonstrate a correlation between skin temperatures and fungal proliferation, and investigated what enabled Hyla arenicolor to survive and reproduce with chytrid present. Ten frogs were sampled with sterile swabs from each of seven different study areas found in Zion National Park. Along with each swab a temperature was taken via infrared thermometer and recorded. DNA was also extracted from the swabs, and Batrachochytrium dendrobatidis- specific primers were used in a touchdown PCR protocol to determine infection rates. Swabs from specimens with higher temperatures were expected to display lower instances of infection. This would establish for the first time a clear demonstration that high skin temperatures were destroying the fungus in infected individuals in the wild.

c-Fos and β-cell Proliferation

January 01, 2015 12:00 AM
Jason Ray, Benjamin Bitner, Kyle Kener, and Brent Jackson, Brigham Young University Life Sciences Type 1 and Type 2 diabetes are increasing at an alarming rate. Both types of diabetes result in decreased functional β-cell mass, which is defined as the number of β-cells multiplied by their Glucose Stimulated Insulin Secretion rate. Decreased functional β-cell mass inhibits regulation of blood glucose levels. β-cells have an extremely low proliferation rate after adolescence, meaning the functional β-cell mass cannot naturally recover. Increasing functional β-cell mass could provide a cure for diabetes, either through pancreatic islet transplants or through enhancement of the endogenous β-cell population. Nkx6.1 has been shown to increase β-cell proliferation by inducing the nuclear receptors Nr4a.1 and Nr4a.3. We have shown that Nkx6.1 increases expression of the gene c-Fos, and that c-Fos induces expression of Nr4a1 and Nr4a3. Furthermore, we have shown that c-Fos is sufficient to induce proliferation of β-cells in the INS-1 832/3 cell line and in primary rat islets. Finally, using lenti-sh-c-Fos to create a stable c-Fos deficient stable cell line, we have demonstrated that Nkx6.1 mediated proliferation is modified by the lack of c-Fos. We propose a model by which c-Fos is a critical link between Nkx6.1 and Nr4a mediated β-cell proliferation.

c-Fos Regulation of Glucose Stimulated Insulin Secretion in Be ta Cells

January 01, 2015 12:00 AM
Benjamin Bitner, Jason Ray, Kyle Kener, and Brent Wright, Brigham Young University Life Sciences β-cell mass is lost in both major forms of diabetes. Mature β-cell have restricted proliferative capacity. Studies aimed at increasing β-cell mass frequently have the unwanted side effects of decreased glucose stimulated insulin secretion (GSIS) or increased apoptotic rates. Without functional β-cells, the body is unable to reduce elevated blood glucose, which results in hyperglycemia induced maladies. Enhanaced GSIS could be used as a treatment for diabetes. Overexpression of the β-cell transcription factor Nkx6.1 induces β-cell proliferation, enhances GSIS and protects against apoptosis. Nkx6.1 induces expression of VGF, which is necessary for enhanced GSIS. Microarray analysis of Nkx6.1 expressing primary rat islets demonstrates upregulation of c-Fos at 24 and 48 hours after adenoviral transduction. We have shown that c-Fos upregulates expression of VGF. Finally, preliminary data suggest that c-Fos modulates GSIS as demonstrated in INS-1 β-cell line, stable INS-1 knockdown cells transduced with lenti-sh-c-Fos and in primary islets. We present a model by which c-Fos is necessary for Nkx6.1 mediated enhanced GSIS by inducing expression of VGF.

Effect of Aggregation at a Winter Feeding Station on Intestinal Parasite Load in Elk (Cervus canadensis)

January 01, 2015 12:00 AM
Morgan Hughes, Utah State University Life Sciences Elk feeding stations are used throughout the Western US as a means to prevent depredation on private lands (Smith,2001). Many of the unintended effects of such artificial congregation remain unexamined. In many species, increased densities result in increased parasite loads (Dietz, 1988) adding physiological stress to individual animals and reducing the economic value of the animal to sportsmen (Choquette, 1956). Through laboratory analysis of fecal float samples, I will monitor changes in the number of parasite eggs for elk at Hardware Ranch feeding station over the winter season. This is to discover if there may be negative implications of feeding stations which should be further examined. Increased prevalence of parasites could also indicate an increased danger for transmission of other diseases which are a threat to domestic livestock (Williams, 2002).

Changes in Water Chemistry in Cedar City Irrigation System

January 01, 2015 12:00 AM
Coral Gardner and Don Long, Southern Utah University Life Sciences Irrigation of lawns and gardens in Cedar City, Utah is accomplished in two fundamentally different manners. In older neighborhoods, water is diverted from a natural stream (Coal Creek) into a series of canals and ditches for residential flood irrigation, compared to newer neighborhoods, which use sprinklers or similar devices from well water. The overall objective of this project is to better understand the chemical and biological changes that occur in irrigation and runoff waters in Cedar City. We are addressing the following three hypotheses. 1) Changes will be observed in water chemistry as surface water moves from Coal Creek through Cedar City. 2) Irrigation strategies influence water chemistry during periods of high precipitation. 3) Microbial community changes will be associated with differences in water chemistry. Water chemistry data including dissolved oxygen, conductivity, pH, alkalinity, dissolved organic matter and nitrate/nitrite were collected weekly at eight sites and during high precipitation events. Over the course of four months, there was a reduction in alkalinity levels among all sites. During high precipitation periods, nitrate was detected in newer neighborhoods. Dissolved oxygen and pH were at higher levels, while salinity and conductivity were lower in a reservoir site relative to irrigation canals. Future work will investigate bacterial community composition in Cedar City waters. We will isolate bacterial DNA from water samples and amplify the 16sRNA segment of DNA using the polymerase chain reaction. We will then correlate bacterial community composition to the water chemistry results described above.

Dispersal of Fairy Shrimp Eggs through Wind and Runoff

January 01, 2015 12:00 AM
Matz Indergard, Paul Spruell, and Fredrich Govedich, Southern Utah University Life Sciences Dispersal of organisms allows them to colonize new habitats and may buffer against extirpation due to localized catastrophic events. For organisms inhabiting ephemeral environments, dispersal can be challenging, as suitable habitat is often small, isolated spatially, and unpredictable temporally. Fairy shrimp are small invertebrates that occupy ephemeral freshwater pools filled by rainfall. Fairy shrimp produce resting (resistant) eggs when conditions are not favorable. Upon the return of supportive conditions, these eggs will then hatch. Little is known about the methods of dispersal used by fairy shrimp. However, it has been suggested that the resting eggs are the most likely life stage to provide dispersal opportunities. We examined two proposed methods of egg dispersal for fairy shrimp (Brachinecta sp) from a series of ephemeral pools just north of Three Peaks near Cedar City, Utah. We hypothesized that dispersal could be attributed to prevailing winds or water runoff, which would disperse eggs in a direction corresponding to prevailing wind patterns or to outflow following the surface gradient. To conduct our test we established three reference points equally spaced in the linearly arrayed series of pools. We then collected soil samples at randomly determined locations around these center points to form an overlapping radial grid. We then added purified water to each of our samples and hatched any shrimp eggs that were present in the sediment. We then mapped the overall concentrations of shrimp in our sampling area. Results to date do not reveal an obvious pattern with prevailing wind direction and dispersal.

C-Fos Protects Β-Cells from Apoptosis

January 01, 2015 12:00 AM
Kyle Kener, Brigham Young University Life Sciences Diabetes is characterized by the inability to maintain a normal blood glucose level caused by decreased insulin due to β-cell loss, or decreased insulin sensitivity in the liver, muscle, and adipose tissue. While β-cell death is a hallmark of T1D, β-cells are also destroyed as T2D progresses. Death of β-cells is eventually a hallmark of both forms of diabetes. This results in decreased functional β-cell mass, which is defined by the ability to secrete insulin while maintaining β-cell number through proliferation or decreased apoptosis. To resolve the decreased β-cell level, much research is being done regarding β-cell proliferation to increase pancreatic β-cell mass. However, another important step in this process is protecting β-cells from apoptotic mediated β-cell death. The β-cell transcription factor Nkx6.1 is sufficient to induce β-cell proliferation and increase protection against apoptotic insults. The Nkx6.1 target gene VGF is critical for protection against apoptosis. Our data demonstrates that Nkx6.1 upregulates expression of c-Fos. Furthermore, we show that c- Fos is sufficient to induce expression of VGF. In addition, our data demonstrates that expression of c-Fos is sufficient to protect β-cells from apoptotic insults. Our data demonstrates that c-Fos is the link between the Nkx6.1 and VGF, and that it’s expression is sufficient to protect rat pancreatic β-cells from apoptosis.

A Genetic Analysis of the Multiple Sclerosis Disease Course as Influenced by Comorbid Diseases

January 01, 2015 12:00 AM
Scott Frodsham, Brigham Young University Life Sciences The goal of this study is to better understand if the genetic variants that strongly correlate with an increased risk of developing multiple sclerosis (MS) also increase the risk of developing diseases that commonly co-occur with MS. This relationship can be determined by comparing genetic data of patients diagnosed exclusively with MS to the genetic data of patients diagnosed with both MS and one of its comorbid diseases. Many electronic medical records (EMR) collected at medical institutions are made available for research purposes. The EMRs of individuals contained in the database that will be used for this study are linked to corresponding genetic information. Data extraction via computer algorithm will be executed to identify patients who, because of their respective diagnoses, will provide meaningful data for analysis. The case group for individuals diagnosed with just MS and have available genetic information consists of 1003 individuals. Applying a basic algorithm (ICD-9 billing codes) to this group has shown preliminary data on patients with MS and one other comorbidity as follows: Hypertension, 192 patients; anxiety, 17 patients; hypothyroidism, 84 patients; Type 1 diabetes, 24 patients; inflammatory bowel disease, 12 patients; migraine, 116 patients; restless leg syndrome, 14 patients; rheumatoid arthritis, 28 patients. The algorithms will be modified to find and include more patients for analysis. We will enhance patient identification by including medications and text keyword searches of clinical notes in the search. Genetic analysis will be performed on the final dataset.

Protein Phosphatase 2A Inhibition Preserves Arterial Function in Obese Mice

January 01, 2015 12:00 AM
Derek Munday, University of Utah Life Sciences Cardiovascular diseases (CVD) are more prevalent in individuals with diet-induced obesity (DIO) and type two diabetes (T2DM). Examples of CVD include blood vessel dysfunction and systemic hypertension. Both of these pathologies are associated with a reduced ability of the inner lining of the blood vessel (the endothelium) to release a substance (nitric oxide) that causes the blood vessel to dilate. At present the mechanism whereby T2DM and DIO decrease the function of the enzyme (nitric oxide synthase; NOS) responsible for nitric oxide synthesis and release is unknown. Determining this mechanism is the current focus of our laboratory. Earlier we reported that the sphingolipid ceramide is elevated in cell models of lipotoxicity and in mice with DIO. Most recently in endothelial cells we showed that ceramide causes protein phosphatase 2A (PP2A) to bind directly with NOS which disrupts the interactions among proteins that are necessary for optimal NOS function. My overall project was concerned with determining whether this mechanism is operational in mice with DIO. Specifically, we tested the hypothesis that PP2A inhibition would preserve vascular protein- protein interactions required for optimal NOS enzyme function to an extent that arterial dysfunction and hypertension would not occur. Mice consumed a control (CON) or high fat (HF) diet for 12 weeks. During the last 2 weeks, cohorts of mice from each group were injected (IP) with saline (vehicle control) or the PP2A inhibitor LB1 (1.0 mg/kg/day). We observed that interactions among proteins required for optimal NOS enzyme function were disrupted in arteries from mice with DIO treated with saline but not with LB1. Furthermore, arterial dysfunction and hypertension existed in mice with DIO that received saline but not LB1. These results strongly suggest that PP2A activation contributes importantly to arterial dysfunction that exists in a pre-clinical model of DIO.

Validation of Metal Chelation by FTIR Spectroscopy

January 01, 2015 12:00 AM
Monika Miller, Weber State University Physical Sciences Nutritionally important minerals are more readily absorbed by living systems when they are combined with organic acids. These combined metal-organic acid complexes are called chelate metals or chelates. The synthetic processes utilized to prepare these mineral chelates adds significant cost to the final product. Occasionally, manufactures sell cheaper dry blends of unreacted minerals and organic acids to gain an unfair competitive advantage in the market place. There are few if any reliable methods for reliable measurement of the extent of chelation between metals and organic acids. We report our successful application of Fourier-transform Infrared Spectroscopy (FTIR) for the quantitative determination of chelation in solid samples of mineral chelates.

Spanish Advertising Use Relative to Median Household Income

January 01, 2015 12:00 AM
According to the 2010 US Census, the Hispanic population in Ogden City, Utah has grown by over 36%. This influx of population of Hispanic descent has influenced local businesses to begin advertising in Spanish through multiple mediums. To determine what factors influence a business’s decision to advertise in Spanish, locations of all print advertising in Ogden were determined through personal investigation. Second, neighborhoods and areas were divided according to census divisions that appear on the official website and median household income as well as the population of Hispanic people was recorded to determine if socioeconomic bias was present in the selection of where to advertise in Spanish. A linear regression comparing the total number of Spanish advertisements found in each geographical area was compared first to income, and then to total Hispanic population. The results of the regression illustrate a potential bias based on financial circumstances rather than ethnicity. Further study is needed to determine if this use of Spanish-advertising in the low-income areas affects Spanish-speakers’ access to healthy foods, housing, or other critical aspects of quotidian life.

Developing a Low-cost NIR Imaging System to Introduce Students to Medical Imaging Techniques

January 01, 2015 12:00 AM
Ashleigh Wilson, Utah Valley University Physical Sciences At many institutions, the algebra-based introductory physics courses are populated with students specializing in biological fields such as preparation for medical or dental schools. While the main focus on the course is to provide the students with a solid conceptual understanding and solving problem skills in physics, the students often see little application towards their fields. This is particularly true in the traditional introductory physics laboratory experiments and demonstrations, which often focus on basic applications and offer no direct relation towards the medical fields. As part of a summer research project, we explored the possibility of developing a low-cost NIR imaging system, which could be used in demonstrations, laboratory exercises, as well as student research projects. The use of infrared imaging in medical physics is an emerging technology with promising prospects, including thermography, biometry, and phlebotomy. For example, when using near infrared (NIR) light (700-1100 nm), vein imaging and mapping is possible. Due to the deoxidized nature of hemoglobin in veins, it exhibits strong absorption at a certain wavelength (~730 nm). The surrounding tissue and arteries, however, allow the radiation to pass through. Utilizing an array of different NIR wavelengths and a modified web camera with a combined cost of $150, we successfully created a low-cost NIR imaging system capable of mapping out veins. This poster will present the instrument setup as well as show the preliminary results. Further potential use of this system will also be presented.

Revision of Colossendeis colossea Wilson, 1881

January 01, 2015 12:00 AM
Coral Gardner, Southern Utah University Life Sciences Sea spiders (pycnogonids) are a small group of exclusively marine arthropods which resemble terrestrial spiders. One family, the Colossendeidae can grow to a very large adult size, much larger than any other pycnogonid. Colossendeis colossea, the largest known species, has a leg span of up to 70 cm and is found in both very deep ocean waters and shallower water in the Antarctic. Since it has been very difficult to obtain and study live specimens of this species, very little is known of their biology and natural history. We have obtained a number of preserved specimens, all labeled C. colossea, from the United States National Museum and are asking the question, are all of these specimens actually C. colossea? To answer this question, the specimens are being compared to syntypes from the Museum of Comparative Zoology and also to the original type description (Wilson, 1881). Based on previous scientific papers on C. colossea and closely related species, the following are used to separate species within this genus: relative proportions of terminal segments of walking leg and of pedipalp; location and number of eyes and shape of eye tubercle; proboscis shape and orientation; number of spine rows on terminal segments of oviger and shape of oviger terminal claw; abdomen size and orientation. Based on these, our preliminary results demonstrate that some of the United States National Museum specimens are not C. colossea since they differ from the syntypes and type description in several of the above characteristics.

Effects of Resveratrol on PMCA in Breast Cancer Cells

January 01, 2015 12:00 AM
Joshua Peterson, Brigham Young University Life Sciences Cancer kills millions of people every year. Cancer occurs when cells proliferate at an excessive rate and do not die as regularly functioning cells do. In cancer cells, the mechanism that initiates apoptosis (cell death) is inhibited. These cells eventually multiply to the point where they interfere with physiological function and cause death. Therefore, one of the aims of cancer research is to find treatments that initiate apoptosis in cancer cells. Many current chemotherapeutic (anti- cancer) treatments are toxic to all mitotic cells, rather than to cancer cells alone. Studies have shown that resveratrol, which is found in grapes, peanuts, and berries, facilitates apoptosis in cancer cells without causing apoptosis in regular cells. The apoptotic activity of resveratrol in tumor cells is dependent on a large, sustained increase in cytoplasmic calcium ion concentration. In properly functioning cells, plasma membrane Ca2+- ATPase (PMCA) pumps excess calcium from the cytosol to the extracellular space. PMCA prevents toxically high levels of calcium and maintains cytoplasmic calcium homeostasis. Using live cell microscopy to monitor intracellular calcium ion concentration, we explore the direct and indirect effects of resveratrol on PMCA activity in MDA-MB-231 (a breast cancer cell line).

Isolation and Characterization of Novel Lytic Phage to Treat Methicillin- Resistant Staphylococcus Aureus

January 01, 2015 12:00 AM
Tyler White, Kyle Jensen, Jacob Hatch, Trevor Wienclaw, Brian Hair, and Aaron Trent, Brigham Young University Life Sciences The bacterium Staphylococcus Aureus (SA) is a common commensal organism of the human nose and skin that can lead to diseases such as pneumonia, endocarditis, and meningitis. These SA infections are usually remedied via antibiotic treatment with methicillin. However, over the course of frequent exposure to various antibiotics, the bacteria have evolved resistance to methicillin to create resistant strains (MRSA) that is completely resistant to this drug and many others (leaving vancomycin as the last viable option). As a result, the need for an antibiotic alternative treatment for this infection is becoming increasingly crucial especially in hospitals where nosocomial transmission of the bacteria is prevalent. Phage are bacterial-specific viruses that have shown promise as anti- bacterial agents for human bacterial pathogens. Thus far, we have isolated 18 different samples of phage that lyse MRSA and 51 strains of S. Aureus (over 20 of which are MRSA). We are currently testing all phage samples against these bacterial strains to determine which phage possess a broad tropism to kill many SA/MRSA isolates. We are also conducting experiments to determine the relative lytic ability of each phage. Lytic phage with broad tropism and/or strong lytic ability will have their genomes sequenced in order to verify their respective novelty. Novel phage will be aggregated to form a highly virulent cocktail that can be used to treat a broad spectrum of SA and MRSA infections.

Three-Dimensional Rapid Prototyping of Vascular Substitutes for Medical Applications

January 01, 2015 12:00 AM
Alex Bischoff, Connor Dodge, Sarah Livingston, Sterling Rosqvist, Tomonori Baba, Kyle Larsen,

Are Canyon Tree Frog (Hyla arenicolor ) Populations in Zion National P ark Affected by Chytrid Fungus (Batrachochytrium Dendrobatidis)? Four Y ear Study Says No!

January 01, 2015 12:00 AM
Madalynne Fedoruk and Darian Carey, Dixie State University Life Sciences For at least three decades, infection with chytrid fungus (Batrachochytrium dendrobatidis) has been a major cause of population decline in amphibians worldwide. This pathogen has been found in canyon tree frogs (Hyla arenicolor) in Zion National Park; previous studies suggested that population sizes decreased in frogs infected with the fungus; but our studies indicated that these frogs were resistant. We hypothesized that chytrid infection in the Zion Canyon tree frogs were not lethal, but other environmental factors caused populations to fluctuate. Canyon tree frogs were captured and swabbed in each of nine canyons in and around Zion National Park during the summer of 2014, and total frog populations were counted in each study canyon. The swabs were analyzed for the presence of chytrid DNA, and infection rates and population sizes were compared with data from 2011-2013. We found that the presence or absence of chytrid had no influence on population size in a particular canyon; population sizes were more dependent on precipitation. The Zion canyon tree frogs resist this normally lethal disease; how they evade it will be the goal of future studies.

Genetic Relationships among Populations of the Primary Flea Vector of Plague to Humans in the United States

January 01, 2015 12:00 AM
Laine Anderson, Utah State University Life Sciences Plague is maintained in complex epizootic and enzootic transmission cycles involving rodents and their fleas. Ground squirrels, prairie dogs, woodrats and their associated fleas have been identified as essential for bacterial maintenance. Oropsylla montana is of major interest due to the fact that it is distributed throughout the western U.S. where most human plague cases occur. Evidence suggests this species is the primary vector of plague to humans. Data on the genetic variation within and among populations of potential vectors of Yersinia pestis, including O. montana, is very limited. O. montana fleas were previously collected from 35 geographically distinct field sites from Colorado and New Mexico on the east, to California and Oregon on the west. Genomic DNA was extracted and mitochondrial and nuclear genetic data was sequenced to estimate phylogenetic relationships. The data collected from these studies will expand our knowledge of natural O. montana populations. We anticipate the genetic data collected from these flea populations will provide information that will assist with understanding human plague risk. Such information will, in turn, provide potentially significant insights into the ecology and epidemiology of plague in this region and is likely to suggest new strategies for monitoring and preventing this disease.

The Role of Palmitate in Upregulating Nr4a1 and Nr4a3

January 01, 2015 12:00 AM
Jordan Tingey, Brigham Young University Life Sciences Diabetes is a serious condition that is increasing worldwide. Diabetes is characterized by lost β-cell mass and uncontrolled blood glucose levels. Pancreatic islet transplantation could be used to cure people with diabetes, however the lack of islets is a major obstacle to its use. If we could understand how to increase β-cell proliferation and glucose stimulated insulin secretion (GSIS) then we could increase success in pancreatic islet transplants. Nkx6.1 induces β-cell proliferation. Nkx6.1 mediated proliferation is dependent on expression of Nr4a1 and Nr4a3. Nr4a1 and Nr4a3 are orphan nuclear receptors. It is currently unknown what ligand induces their activation. Previous reports have shown that free fatty acids induces expression of Nr4a1 and Nr4a3 in muscle, liver and adipose tissue. We show that culture of our INS-1 832/3 β -cell line in the presence of 0.2 mM palmitate induces expression of Nr4a nuclear receptors. Furthermore, culture with 0.2 mM palmitate results in increased β -cell proliferation. Finally, using INS-1 cells cultured with palmitate, and INS-1 cells deficient for either Nr4a1 or Nr4a3 we demonstrate the effect on mitochondrial respiration. Our data demonstrate that free fatty acids that are present during diabetes may induces expression and enhance activation of the Nr4a nuclear receptors, thus resulting in enhanced β -cell proliferation.

Study the Stability of Steady Solutions for a Model of Mutualism

January 01, 2015 12:00 AM
Amy Gifford and Brennon Bauer, Southern Utah University Mathematical Sciences Mutualism is the way two organisms of different species exist in a relationship in which each individual benefits from the activity of the other. We study a mathematical model of mutualism. The stability of the steady state solutions of this system will be analyzed. Also, we give some numerical experiments that verify the theoretical results for those steady solutions.

The Musical Phiquence: Finding Phi in Musical Progressions

January 01, 2015 12:00 AM
Sergio Arellano, Snow College Mathematical Sciences Why is music so pleasant to? In Western music, we have used what is called the “tempered scale” for centuries, and even though it has gone through changes, it is still largely based around the mathematical principles that Pythagoras created two thousand years ago. Is it possible that the explanation to this phenomenon has to do with the mathematical basis of music, which is unconsciously perceived by the brain? The human brain is known for detecting the underlying mathematical patterns present in many non-music related disciplines, such as visual arts. Independent of the music world, there is a proportion called the Golden Ratio or Phi. It is found in art and geometry, because human eyes tend to find that this proportion produces beauty. This is not a coincidence; this proportion is found everywhere around us, especially in nature. With this in mind, it makes sense to search for the Golden Ratio in the tempered scale to explain the mind’s intuitive appreciation of music. This research discovered the surprising fact that there is a Phi relationship between the first and third degree of the major scale, in terms of the frequency of sounds. The relationship is this: the sum of the frequencies of the notes of the minor III chord divided by the sum of the frequencies of the major I chord in any given major key, tends to be Phi. Another very surprising result was the importance of the number 24 in the frequencies of the major scale. These two particularities help to shed light on why human ears have an untaught comprehension of music; the underlying perception of mathematical relationships by the mind are related to the natural appreciation of it.

High-Sensitivity Spot Tests Used for the Detection of Diphenhydramine

January 01, 2015 12:00 AM
Melissa Warren, Weber State University Physical Sciences Spot tests are commonly utilized as presumptive qualitative tests for detecting chemical substances. Such tests are the basis for detection of illegal drugs or for cleaning validations in manufacturing systems. In this study we evaluate the use of Scott’s reagent and Mandelin reagent for the detection of trace quantities of diphenhydramine (Benadryl). These reagents have been reported to give false positive tests for illegal drugs such as ketamine (cocaine) when diphenhydramine is present. Our studies were focused on enhancing the detection limits of these reagents and their application of swab tests for diphenhydramine. We report the limits of detection and swab techniques that enhance selectivity and sensitivity for this analyte.

Towards a New Classification of Rivers Based upon Generic Stage-Discharge Rating Curves

January 01, 2015 12:00 AM
Jeremiah Rundall, Utah Valley University Physical Sciences The practice in hydrology is to deduce stream discharge from stream stage by creating a rating curve for each stream site from simultaneous measurements of stage and discharge. If a river could be assigned a generic rating curve with a small number of parameters, the cost of developing rating curves could be reduced. The first step has been to classify rivers according to whether there is a unique relationship between stage and discharge. The USGS National Water Information System database of about 3.8 million simultaneous measurements of stage and discharge at15,345 active and historic stream gaging sites was imported into a Python-driven data manipulation script. Linear relationships between z-scores of the logarithms of stage and discharge were developed for each site. A frequency spectrum of the slopes of the linear relationships was created by summing the normal distributions for each site with mean equal to slope and standard deviation equal to uncertainty in slope. There were no stream gaging sites at which discharge changed without a change in stage. At about 70% of stream gaging sites, over 90% of the variation in stage corresponded to a variation in discharge. At the remaining sites, significant variation in stage occurred without a variation in discharge. Current research involves identifying the characteristics of stream sites that lack a unique stage-discharge relationship and creating classes of generic rating curves by considering more complex functional fits.

Peak Density and Attenuation as Complementary Parameters for Differentiating Breast Tissue Pathology

January 01, 2015 12:00 AM
Nicole Cowan, Utah Valley University Physical Sciences Breast cancer is the second most prevalent cancer among women, affecting one out of eight women in their lifetime. The ability to differentiate between malignant and normal tissues during breast cancer surgery would enable the surgeon to remove all of the cancer from the affected region in the breast, thereby reducing the risk of recurrence and the need for subsequent surgeries. A pilot study conducted at the Huntsman Cancer Institute showed that high-frequency ultrasound (20-80 MHz), and in particular the ultrasonic parameter peak density, was sensitive to breast tissue pathology. The objective of this study was to determine the effect of tissue microstructure on peak density using phantoms that mimic the histology of breast tissue. Phantoms were created from a mixture of distilled water, Knox gelatin, and Metamucil fiber. In order to simulate breast tissue histology and terminal ductal lobular units, polyethylene microspheres were embedded into the phantoms in layers, totaling 4 layers per phantom. The volume percent of polyethylene microspheres was kept constant in each phantom while varying microsphere sizes (58-925 μm diameter). Pitch-catch and pulse-echo measurements were acquired using 50-MHz transducers (Olympus NDT, V358-SU, 50 MHz, 0.635-cm diameter active element), a HF pulsar-receiver (UTEX, UT340), and a 1-GHz digital oscilloscope (Agilent DSOX3104A). Glycerol (Genesis Scientific) was used as a coupling agent between the transducers and the phantoms. Spectra were derived from the data, giving peak density (the number of peaks and valleys in a specified spectral range) and attenuation values. In a previous study, histology- mimicking phantoms were fabricated where the weight percent of polyethylene microspheres was kept constant, but the microsphere diameter was varied. The former study showed a clear trend of higher peak density values for smaller diameters, but no trend for attenuation. In contrast, the phantoms from this study showed no trend in peak density, but a clear trend of higher attenuation values for larger microspheres. The results show that specific changes in tissue microstructure affect the parameters of peak density and attenuation differently. Changes in the number of scatterers and in their size, as in the previous study, affected peak density most significantly. In contrast, changes solely in the size of the scatterers, but not in their number, affected attenuation most significantly. These results are consistent with attenuation results for lobular carcinoma in the pilot study. These results show that peak density and attenuation are complementary parameters, and could be used together to characterize a variety of tissue pathologies

High-Frequency Ultrasonic Measurement of Angiogenesis in Mice with Breast Tumors and Ligated Femoral Arteries

January 01, 2015 12:00 AM
Michaelle Cadet, Utah Valley University Physical Sciences Breast cancer is the most common cancer among women in the United States. Tumor angiogenesis and its inhibition is an important aspect of oncology and the treatment of cancer. High-frequency ultrasound (10-100 MHz) is particularly sensitive to small vascular structures that are close in size to the ultrasound wavelength (15-150 _m). The ability to rapidly determine the degree of vascularization in small animals in vivo would provide a useful characterization tool for breast cancer studies. The objective of this study was to determine if direct ultrasonic measurements in the 10-100 MHz range could be used as a vascularization assay for breast tumors and other tissues. To accomplish this, six mice from the Huntsman Cancer Institute (Salt Lake City, Utah) with grafted breast cancer tumors (three control and three treated with an angiogenesis inhibitor called Avastin) were tested in vivo using through-transmission ultrasonic measurements. A second study was also performed at the Ludwig Boltzmann Institute for Experimental and Clinical Traumatology (Vienna, Austria), where the femoral artery in one hind leg of each of sixteen mice was ligated and tested over the time period of eight days. Eight of the ligated limbs were treated with vascular endothelial growth factor (VEGF) while the remaining eight ligated limbs were allowed to grow ischemic. The unligated limbs were controls. Results from the Huntsman Cancer Institute study indicated that breast tumors in Avastin-treated mice showed higher ultrasound velocities than control tumors. This can be ascribed to the vasculature in the nontreated tumors creating greater wave scattering in the tissue, thus decreasing the velocity. Results from the Boltzmann Institute study indicated that in mice with ligated femoral arteries, ultrasonic signals from ischemic limbs displayed a decrease in wave velocity over the test period as compared to the VEGF-treated limbs. However, both the ischemic and VEGF-treated limbs showed decreases in ultrasonic attenuation during the entire test period. Results from Avastin-treated mouse tumors and mouse limbs with ligated femoral arteries revealed that high-frequency ultrasound holds potential for measuring angiogenesis in vivo.

Invasive Aquatic Species Attachment Inhibited by Surfactant Paint

January 01, 2015 12:00 AM
Kyle Marcus, Cami McKellar, Riley Pearce, Shay Beck, and Zenja Draca, Dixie State University Physical Sciences Invasive marine and freshwater species have a detrimental impact on aquatic ecosystems and are easily transferred between bodies of water as a result of unregulated settlement and attachment to commercial and recreational watercraft. This results in infestation of waterways and disruption of native organisms throughout an ecosystem. The quagga mussel (Dreissena rostriformis bugensis) is one example of such invasive species that has called for a focus on cross-contamination prevention. The goal is to use aquatic paint suitable for watercraft that prevents the settlement and/or attachment of various aquatic species such as algae, snails (Physa sp.), anemones (Aiptasia sp.), and quagga mussels. The paint is integrated with newly developed surfactants that act as an inhibitor to the adherence ability of invasive aquatic species. The surfactants are added to provide a barrier between the paint surface and the organisms creating an undesirable surface area for the organisms to attach. This barrier disrupts the specific naturally occurring chemical and physical processes that allow organisms to adhere to surfaces. The most innovative characteristic of the surfactant-based paint is its effectiveness on adherence inhibition without degradation, dissociation, or toxicity to the environment. Preventing adherence of invasive organisms to surfaces could have significant positive effects on the efficiency and cost of operations in marine environments and waterways.

Monitoring Angiogenesis in Early Chick Dev elopment Using High-frequency Ultrasound: Method Development and Preliminary Results

January 01, 2015 12:00 AM
Cameran Mecham, Utah Valley University Physical Sciences Introduction:

High-Frequency Ultrasound (20-80 MHz) for Analyzing Breast Cancer Surgical Margins: A 73-Patient Clinical Study

January 01, 2015 12:00 AM
Amy Fair Brother, Utah Valley University Physical Sciences Results from a 2010 pilot study indicated that multiple parameters in high-frequency (HF) ultrasound spectra (20-80 MHz) correlate to a range of tissue pathologies in surgical margins from breast conservation surgery (BCS). One of these parameters, peak density, was particularly effective at discriminating between normal, atypical, and malignant patholUtah Conference on Undergraduate Research 2015 100 ogies. Subsequently, Utah Valley University and the Huntsman Cancer Institute initiated a follow-up study to further investigate this approach. Objectives: The purpose of this study was to determine the sensitivity and specificity of HF ultrasound for differentiating malignant tissue from normal tissue in BCS surgical margins. Methods: A 73-patient blind study was conducted with conventional pathology used as the gold standard for assessing the HF ultrasound method. Specimens were delivered by the surgeon’s team immediately following resection and ultrasonically tested outside the surgical suite. The margins were approximately 3x20x20 mm, and were oriented using a small staple inserted by the surgeon in one corner and a stitch on one side. The margin was tested at 2-5 locations on the specimens using our methodology and then sent to pathology for their analysis. 498 specimens were tested from 73 patients. That corresponded to 1112 positions collected from the margins. The data was then analyzed for malignancy using peak density, and then correlated with the traditional pathology. Results: Results from the current study indicate that peak density can differentiate between malignant and nonmalignant pathologies with an accuracy of 73.8%. The correlation between pathology and peak density has a high level of statistical significance compared to random chance, with p = 0.000078 (Fisher’s Exact test). The results also provide data for improving the technique. For example, approximately 3 times more false positives were observed than false negatives, indicating the peak density threshold used for identifying malignant pathology is most likely too low and should be adjusted to a higher value. Conclusions: Results from this study showed that HF ultrasound has the potential to provide rapid, intraoperative evaluation of surgical margins, thereby decreasing the number of additional surgeries for patients and thus increasing the quality and efficacy of surgical treatment for breast cancer.

Expression of the C-terminal Domains of the Tight Junction Proteins Claudin-16, -3, and -4 to Identify Interacting Proteins in Epithelial Ovarian Carcinoma

January 01, 2015 12:00 AM
Brandon Davies, Utah Valley University Physical Sciences Epithelial ovarian carcinoma (EOC) is the sixth most common cancer in US women. The long-term cure rates are low due to the lack of reliable biomarkers for early disease detection, resulting in advanced stage diagnosis. Approximately 75%-80% of ovarian cancers are diagnosed at stages IIIV with a 10% 5-year survival rate despite aggressive treatments. Claudin proteins are being studied as possible biomarkers as they are aberrantly overexpressed in EOC tumors. The Claudin family of proteins are a main component of tight junctions in the upper region of epithelial cells that act as gateways for the exchange of water and solutes while also helping determine the cell’s polarity and function. Changes in these proteins cause changes in phenotype and function of normal epithelial cells, such as proliferation control, trans-epithelial resistance, polarity, and solute transport. Claudin-16 is often aberrantly expressed in breast and ovarian cancer, while Claudins 3- and 4 are highly overexpressed in EOC. The location of these proteins is also correlated with oncogenic transformations and cell proliferation. Determining the specific characteristics of these Claudin proteins can prove to be of incredible benefit in cancer treatments. As these proteins are targeted during these therapies, these tight junctions may then send normal signals, which in turn can regulate the cell normally. The C-termini of the Claudins, which are cytoplasmically located, contain a known PDZ-binding motif and may interact with other junction proteins or with proteins involved in interesting signaling pathways. To identify these interacting proteins, we will use the Expresso T7 Cloning System (Lucigen Corp., Middleton, WI) to purify the Claudin-16, -3, and -4 C-terminal tails to use in pull-down assays. This process includes using affinity tags to capture the Claudin tails by FPLC, which can then be analyzed by SDS-PAGE and, ultimately, the corresponding genes cloned and sequenced. This study can potentially provide crucial information in relation to how members of the Claudin family interact with other proteins that are commonly found in tissues that are misregulated in cancer. With this data treatments can be improved to increase the responsiveness of ovarian cancer patients.

Plant Fossil Locality in the Shinarump Member of the Chinle Formation (Upper Triassic) of Southwestern Utah (Washington County)

January 01, 2015 12:00 AM
Melinda Hurlbut, Dixie State University Physical Sciences A newly discovered plant fossil locality in the Chinle Formation (Upper Triassic) in Washington County broadens the distribution of known Late Triassic plant fossil localities to include southwestern Utah. Previously reported plant localities in the Chinle Formation are known from southeastern Utah, Arizona, New Mexico, and equivalent strata from the Dockum Group in Texas. The majority of the known plant fossil localities are from higher stratigraphic units of the Chinle Formation. However, the new Washington County locality is from the older, basal unit, the Shinarump Member. The plant fossils identified from the new locality include fronds of the fern Phlebopteris sp., fertile leaves of the fern Cynepteris sp., and leaves of the bennettitalean Zamites sp. Undetermined species of conifers are represented by a partial branch and a three- dimensionally preserved cone containing well preserved seeds. The diversity of species found at the Washington County plant fossil locality correlates with other known floral assemblages from the Chinle Formation, suggesting general homogeneity of Chinle Formation floras. These plant fossil assemblages support interpretations of basal Chinle Formation paleoclimates as humid and warm.

Analytical Chemistry Applications for Ionic Liquids as Novel Solvents

January 01, 2015 12:00 AM
Mattie Jones, Dixie State University Physical Sciences Current techniques for isolating components of samples found at crime scenes by their unique chemical properties are lengthy and often destroy important forensic evidence. New methods aimed at forensic analysis of sensitive, minute samples are critical to the intelligence community. In particular, successful extraction of dyes from materials found at crime scenes will provide innumerable benefits for matching, identifying, and finding origins of these materials and dyes. Ionic liquids possess the necessary chemical properties to ensure efficient extractions while maintaining the forensic signatures of the original materials. Ionic liquids, which are organic salts that are room temperature, provide a versatile solvent to achieve single-component extraction-separation-identification of forensic analytes. Following extraction, successful identification by infrared, absorption, and fluorescence spectroscopy has provided evidence of preserved quality and complete separation of material and dye. This novel approach to forensic analysis is advantageous particularly when sample sizes are extremely limited, but it can be readily scaled to larger applications. Developing a simple and affordable method of achieving specific molecular interactions provides a solution for often unidentifiable evidence in crimes. Harnessing the versatility of ionic liquids in a high-yielding recovery and efficient single-pot methods will enhance forensic abilities for the intelligence community and forensic investigators.

Analysis of Flavonoids, Catechins, and Proanthocy anidins in Cacao Chocolate

January 01, 2015 12:00 AM
Brad Draper, Hannah Firth, and Patricia Stauffer, Weber State University Physical Sciences It is widely known that cacao beans are one of the most abundant sources of naturally-occurring flavonoids on earth. However, chocolate products contain only a small percentage of the original flavonoids present in cacao beans, indicating that up to 95% of these flavonoids are lost during the manufacturing of chocolate. However, no one has identified the specific events or steps in chocolate preparation that destroys these flavonoids. We have measured the concentrations of a variety of nutritionally beneficial flavonoids at each step of the chocolate manufacturing process to identify the related extent of flavonoid losses. Following multiple-step extractions and sample preparations, we utilized chemical techniques of TLC, UV/VIS Spectroscopy, HPLC, and organoleptic testing to measure the levels of catechins and proanthocyanidins at each step of the chocolate making process.

Geophysical Survey of Gossans in the Eastern Uinta Mountains, Utah

January 01, 2015 12:00 AM
David Sutterfield, Utah Valley University Physical Sciences When sulfide-bearing rocks are exposed to oxidizing conditions, they become destabilized, leaving behind a framework of leached, altered, and replaced host rock called a gossan. Many of these gossans form by the oxidation of ore minerals and have been known since antiquity to be associated with ore deposits. However, the extent and quality of ore mineralization beneath a given gossan cannot readily be determined through surface sampling of minerals. Work conducted by mineral exploration professionals (in Africa, Australia, India, and the Middle East) has indicated that geomagnetic and geoelectric surveys of a gossan can be useful for constraining the shape, size, and economic potential of an associated ore deposit. Although gossans are found in Utah, there have been no published studies of these rock units either in terms of their economic potential or geophysical signature. The objective of this study was to carry out geomagnetic and geoelectric surveys to determine the geophysical signature of gossans exposed about 10 miles northwest of Vernal, Utah, on the southeastern margin of the Uinta Mountains, for the purpose of estimating the grade and depth of possible sulfide mineralization. The gossans overlie a heavily brecciated wedge of Mississippian Madison Limestone and are structurally bounded by the South Flank Fault, which forms the boundary between the Permian Weber Sandstone to the south and the Neoproterozoic Uinta Mountain Group metaquartzites to the north. Geoelectric measurements with an Iris Instruments Syscal Junior Resistivity System and inversion of a portion of the resistivity and chargeability data with the Interpex IX1D Sounding Inversion software shows a resistivity low (~200 Ω·m) and a chargeability high (~7 ms) below 23 m depth. Measurements of total magnetic field using a Geometrics G-856 Proton Precession Magnetometer were modeled with Interpex IX2D-GM Magnetic Interpretation Software and constrained with magnetic susceptibilities of exposed rocks measured in the field using a SM-20 Magnetic Susceptibility Meter. Models based upon a portion of the data show anomalies of amplitude about 100 nT and wavelength about 50 m, suggesting isolated bodies of elevated magnetic susceptibility (~0.08 SI units) with upper surfaces 20-30 m below the surface. Since, based upon the topography, the depth to the water table is also 20-30 m, the geophysical measurements are consistent with the presence of reduced sulfide bodies below this depth. Further work will include interpretation of remaining data and possible drilling for improved calibration of geophysical models.

Effect of Roundup on Brine Shrimp (Artemia) Development

January 01, 2015 12:00 AM
Kimberly Lowder, Weber State University Physical Sciences The herbicide Roundup and its active ingredient, Glyphosate, are widely used for weed control. These chemicals end up into streams and lakes, including the Great Salt Lake where it adversely affects wildlife. The goals of this project are a) to assess the mortality rate of Artemia larvae exposed to various concentrations of Roundup concentrate after a short exposure (48h) or a long-chronic exposure (7 days), b) to assess the effect of chronic on survival, maturation and fertility and c) to quantify the stress response of the shrimp on the heat-shock proteins 90 and 70. Materials and Methods: For the acute exposure, Artemia larval mortality was calculated in larvae exposed to Roundup concentrations ranging from 10-3 to 10-10 ml/l of Roundup concentrate for 48 h. For the chronic exposure, larvae were raised in the above Roundup concentrations. Mortality, maturation and fertility rates were calculated. The response to stress was assessed by quantifying the up-regulation of stress proteins hsp90 and 70 using western blots. Results: All larvae were killed after exposure at 10-4 g/l or greater of Roundup concentrate. Most larvae survived at Roundup concentrations of 10-6 ml/l or less. While chronic exposure to lower Roundup concentrations did not seem to affect survival or maturation rate, it did affect larval development. Larvae developing in 10-7 ml/l or more Roundup had about a 20% risk of not hatching or dying shortly after hatching. Hsp70 western blots showed an upregulation of this heat-shock protein at 10-5 ml/l or higher Roundup concentrations.

Influence of antibiotics on Gut Microbiota and Resultant Psychological Behavior

January 01, 2015 12:00 AM
Shireen Partovi, Utah Valley University Physical Sciences The normal flora of microbiota that resides in our gastrointestinal tract acts as a community and provides a number of functions such as assisting with the breakdown of waste, protecting our tissues and organs from invading species, and playing a role in the immune response. These microorganisms may also play a role in altering our brain chemistry and changing our psychology and behavior. This mechanism is considered to be due to their ability to produce neurochemicals that mimic those produced by our own bodies. Therefore, it is possible that antibiotics may have a detrimental effect on our gut flora, thereby inducing a host of undesired side effects. These described side effects may include changes in normal psychological behavior, such as the presentation of anxiety or depression. This hypothesis is increasingly relevant as antibiotic resistance is rising due to poor education regarding bacterial infections and as the appeasement of insistent patients continues. This research aims to illustrate the harm that over-medicating may have on our behavior as a result of afflicted gut microbiota. This research will use peer reviewed journal articles that include studies and experiments to determine the influence of gut microbiota on brain chemistry and therefore psychology and behavior. Specifically, the exact implications of consistent antibiotic use and the impact on gut microbiota will be examined and a correlation will be presented. Therefore, the purpose of this research is to illustrate this problem in regards to the healthcare industry and the over-medication of patient.

Peak Density Histograms and Pathology Interpretations for High-frequence Ultrasonic Testing of Breast Cancer Surgical Specimens

January 01, 2015 12:00 AM
Robyn Omer, Utah Valley University Physical Sciences Removal of all malignant tissue during lumpectomy is critical for preventing local recurrence of the breast cancer. Failure to remove all cancer results in 20-40% of lumpectomy patients returning for additional surgery. At Utah Valley University, a method is being developed to detect cancer during the initial surgery to ensure all of the cancer has been removed. Peak density, which is the number of peaks and valleys in a specified spectral range of a high-frequency (HF) ultrasound signal, correlates to breast pathology in lumpectomy specimens. The objective of this study was to determine if the histograms of peak density versus the number of measurements provide information on corresponding breast tissue pathology. High-frequency ultrasonic data were obtained from a blind study of surgical specimens obtained from 73 lumpectomy patients at the Huntsman Cancer Institute in Salt Lake City, Utah, and South Jordan, Utah. The data were normalized to remove bias between patients. The ultrasonic signals were converted to spectra using a Fourier transform. Peak densities were calculated from the spectra by counting the number of peaks and valleys in the 20-80 MHz range. This was achieved by counting where the slopes of the spectra (their derivatives) crossed zero. A histogram was created by assigning each peak density value to a bin, and then counting the number of measurements that fell within that bin. The histogram of the peak densities produced an asymmetric Gaussian-type distribution with a range of peak density values from 0 to 27 and a mode of 5. Using threshold values determined from a pilot study for differentiating pathology with peak density, it was determined that the peak of the distribution (5-6) corresponded to normal tissue pathology, the shoulders of the distribution (0-4 and 7-10) corresponded to abnormal pathologies, and the tail of the distribution (11-27) corresponded to malignant tissue types. These correlations matched the types of specimens tested, specifically tumors, margins, and lymph nodes. The correlations also provide a measure of the success of removing malignant tissue and achieving negative margins during lumpectomy procedures. Using histograms to analyze the data not only provides a new approach for differentiating tissue pathology, but also provides a statistical measure of the success of lumpectomy procedures performed by a specific surgeon or at a specific institution.