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2014 Abstracts

Do Canyon Tree Frogs in Zion National Park Possess a Mechanism to Defend Against Chytrid?

January 01, 2014 12:00 AM
Chelsea Moody, Dixie State University Life Sciences A relatively new pathogen, chytrid fungus, has been a major cause of decline in amphibians worldwide. This pathogen has been found on Canyon Tree Frogs in Zion National Park. Earlier data suggested that chytrid did not affect populations of Canyon Tree Frogs in Zion National Park. We predicted that since the populations weren’t impacted by the presence of the fungus, there must exist a mechanism by which the frogs rid themselves of the infective agent. To test this prediction, we captured and swabbed ten frogs in each of nine canyons in Zion National Park during the summer of 2013. Swabs were sent to the San Diego Zoo to be analyzed for the presence of chytrid DNA. Chytrid infection rates and population sizes were compared with data from previous years. As expected, the data showed that two of the three infected canyons experienced declines in the percentage of frogs testing positive for the fungus. Thus, these frogs must possess a mechanism to survive this pathogen, whereas most amphibians do not. Our results may prove helpful to other biologists seeking to understand how amphibians can survive this pathogen.

Attachment reduction of invasive species with submersible substrates

January 01, 2014 12:00 AM
Eric Swenson, Dixie State University Life Sciences Underwater invasive species such as mussels and algae attach to submersible substrates that are advantageous for growth, and often include recreational boats that are frequently moved from one waterway to another. This can lead to rapid and uncontrolled spread of the invasive species. Through the use of newly developed ionic surfactants, growth and attachment of species on submersible surfaces can be inhibited. New surfactants have been incorporated into the final coating of typical product sealants to prevent the attachment of various marine organisms. By integrating the surfactant into the coating, an increase in the usefulness and longevity of effective inhibition is expected, as compared to commercially available alkali anti-fowling agents that are applied after the sealing process. It is hypothesized that the adherence properties possessed by marine organisms will be compromised by the introduction of ionic surfactants through changes in the chemical makeup of the exposed surfaces. The ultimate goal is to develop a substrate surface in which there is no affinity for attachment and/or causes fatality to the organism. If the desired outcome is reached, the potential benefits that ensue could create drastic improvements in areas of invasive species prevention and management in the desert southwest fresh-water lakes. Additionally, extension of the surfactant application to metal surfaces could have significant impacts on efficiency in water treatment systems, as well as cargo shipping in saltwater environments.

Nitrogen content in lichens as an indicator of inversion-based deposition

January 01, 2014 12:00 AM
Brianne Palmer, Utah State University Life Sciences Inversions have plagued the valleys in Utah resulting in built up pollution carpeting the cities and spreading into surrounding ecosystems. The ecological impact of these inversions is unknown. Inversion-based pollution events deposit nutrients and pollutants in the ecosystems. The purpose of this study is to determine if lichens, due to their unique physiology, preserve a record of inversion-based nitrogen deposition in order to assess the ecological impact of the inversions. In June and July of 2013 we collected 111 samples of lichens from sites exposed to the inversions, along Red Butte Creek and on an elevation gradient on Grandeur Peak in Salt Lake City. The collection focused on two species of lichens (Xanthomendoza montana and Xanthomendoza fallax) because they are easily identifiable and live in all the sampling sites. The samples were ground, run through a stable-isotope mass spectrometer and analyzed for the %N and δ15N. If lichens hold a record of inversion-based depositions there should be more nitrogen in lichens from the sampling sites closer to the pollution source (Salt Lake City). Once the data was complied, the resulting graphs showed no correlation between %N and distance from Salt Lake City between δ15N and the pollutant source. However, the isotopic variability within the samples was greater than expected and requires further research.

Antimicrobial Properties and Composition of Essential Oil Isolated from Ericameria linearifolia (Asteraceae)

January 01, 2014 12:00 AM
Preston Manwill, Sourthern Utah University Life Sciences Plants produce myriad secondary metabolites (essential oil) that play a role in ecological interactions. Species evolve unique mixtures of organic compounds due to strong selective pressures that act on metabolic pathways. Few studies have investigated the antimicrobial properties of secondary metabolites that evolved against soil microbes associated with native plants. The essential oil of Mojave goldenbush (Ericameria linearifolia), a shrub native to the Intermountain West, was characterized and its bacteriostatic abilities against root associated and non-root associated bacteria morphs were examined in this study. We hypothesized E. linearifolia oil would act as a greater growth inhibitor against native soil bacteria with which it has evolved than against bacteria from non-associated soils. Secondary metabolites were extracted using steam distillation and analyzed with gas chromatography mass spectroscopy. A Kirby-Bauer assay tested presence, size and retention of inhibition zones (IZ) produced against soil bacteria. The essential oil of E. linearifolia contained twenty secondary metabolites, two of which, limonene and sabinene, constituted greater than fifty percent of the oil. Presence and retention of IZ produced by E. linearifolia metabolites varied significantly by community association and bacteria morph. The hypothesis was supported by IZ that were largest against bacteria cultures isolated from soil that surrounded Mojave goldenbush roots and least effective against cultures isolated from non-root associated soil. Our findings suggest that secondary metabolites of E. linearifolia have evolved to specifically prevent negative interactions with bacteria most associated with the plant.

Killing of intracellular Mycobacterium ulcerans by mycobacterial phage cocktail using avirulent Mycobacterium smegmaits as a vector

January 01, 2014 12:00 AM
Justen Despain, Brigham Young University Life Sciences Mycobacterium ulcerans is an acid fast intracellular bacteria that is the causative agent of Buruli Ulcer, a disease endemic in tropical regions of Africa. The disease starts as a nodule that progresses into a necrotizing skin lesion. Treatment ranges from antibiotic therapy to surgical removal of surrounding skin to stop necrotization of the skin. Owing to the intracellular nature of M. ulcerans, antibiotic therapy can be an ineffective treatment option. It has been previously shown that mycobacteriophage can reduce extracellular bacterial load in mice infected with M. ulcerans. In this study, we propose a method of killing intracellular M. ulcerans by mycobacteriophage using avirulent Mycobacterium smegmaits as a vector.

Insights into the evolution of wings in Insects: Molecular Phylogenetics of Baetidae (Ephemeroptera)

January 01, 2014 12:00 AM
Chase Barker, Utah Valley University Life Sciences Central Research Question: Phylogenetic relationships of mayflies are still not very well known, however molecular and morphological data have begun to shed light on the relationships of these insects (Ogden et al. 2009). Our central question is to elucidate the phylogenetic relationships within the mayfly family Baetidae.

Nucleosome positioning preferences of octamer containing H2A variants Htas1 and Htz1 in C. elegans

January 01, 2014 12:00 AM
Sharisa Nay, Brigham Young University Life Sciences Gene therapy is a growing field of science with the potential to improve thousands of lives. With an eye toward improving the effectiveness and longevity of gene therapies, my project examines the preferential binding tendencies of the histone protein variants Htz1 and Htas1. Htz1 is the Ceanorhabditis elegans homolog of H2AZ, an important variant of the H2A histone. This protein has been shown as necessary for survival and as playing a role in the prevention of ectopic heterochromatin spread. Htas1 is another variant of H2A that plays a role in the increased transcription of sperm-producing genes. The preferred positioning of these variants on naked DNA is not yet known. Through a DNA extraction, nucleosome reconstitution, and DNA digest and sequencing, we will take these variants and examine where they are prone to localize within the N2 Bristol strain of c. elegans. This will allow us to include DNA sequences on our gene insertions possessing a high binding-affinity for these transcription-promoting histones. Thus, if we can identify the locations at which these variants will localize within DNA, we will be able to insert these preferred constructs into the genes used for gene therapy and thereby increase the effectiveness of gene therapies.

Leech Population Genetics in Southern Utah

January 01, 2014 12:00 AM
Kevin Nay, Southern Utah University Life Sciences Leech taxonomy has traditionally been based on morphological characters, but with new developments in DNA technology many taxonomists are starting to use genetic information in descriptions of new species. Leeches in southern Utah are poorly inventoried with respect to many other aquatic animals. There have been few morphological inventories of leeches and even fewer descriptions of the genetic diversity within leeches. Landscape genetics is a powerful tool used to understand geographic patterns of genetic diversity. Southern Utah has many naturally isolated bodies of water due to the climate and the dramatic changes in elevation in this part of the country. The landscape genetic study of leeches in southern Utah will provide us with a better understanding of genetic differentiation within southern Utah leeches. The mitochondrial DNA (CO I region) will be used to estimate genetic diversity and examine the relationships among individuals in two populations of leeches. I hypothesize that leeches in southern Utah will have greater genetic diversity then historically recognized from morphological studies suggesting a new species of leech. The study will lead to better understanding of the taxonomy and identification of southern Utah leeches.

Interaction of fungal endophytes and gall-forming aphids on cottonwood trees

January 01, 2014 12:00 AM
Julia Hull, Weber State University Life Sciences Endophytes are fungi that live within aerial portions of plants for most or all of their life cycle without causing visible signs of disease. Gall forming aphids, Pemphigus betae, are highly competitive over gall site selection (Moran 1993), forming galls on the leaves of narrowleaf cottonwood and their hybrids. The favored gall location overlaps with areas of highest endophyte probability. I hypothesized that a negative correlation would exist between endophyte infection and aphid galling on leaves of backcross hybrid cottonwood trees.

Ethanol Inhibits Dopamine Release at Terminals in the Nucleus Accumbens Via GABA Receptors

January 01, 2014 12:00 AM
Eliza Warren, Brigham Young University Life Sciences We have previously demonstrated that ethanol inhibition of medium spiny neurons (MSNs) in the nucleus accumbens (NAc), and γ-aminobutyric acid (GABA) neurons in other ethanol-sensitive brain areas, is mediated by GABA(B) receptors. The aim of this study was to evaluate the involvement of GABA and glutamate (GLU), and in particular GABA(A), GABA(B) and NMDA receptors, in mediating ethanol inhibition of dopamine (DA) release in the NAc. Using fast scan cyclic voltammetry (FSCV), we evaluated the effects of ethanol on DA release in the NAc core of C57/BL6 and CD-1 mice. In the slice preparation, local stimulation evoked robust, frequency-dependent DA release in the NAc, with maximal release at 20 Hz. Ethanol decreased DA release with an IC50 of 60 mM in C57Bl6 mice. In anesthetized C57BL6 mice, ethanol decreased DA release with an IC50 of 2.0 g/kg. Superfusion of the GABA(B) receptor antagonist CGP55845 enhanced DA release 85%, while neither the GABA(A) receptor antagonist bicuculline, the GABA(A) receptor agonist muscimol, the GABA(B) receptor agonist baclofen, nor the NMDA GLU antagonist APV significantly affected DA release. CGP55845 blocked ethanol inhibition of DA release, while neither bicuculline nor APV altered ethanol’s effects. GABA inhibited DA release at 0.5-10 uM but not at 0.1-1 mM. Compared to ethanol effects on DA release in C57BL6 mice, CD-1 GAD GFP knock-in mice, which only express GAD at 50% levels, were significantly less sensitive to ethanol. As DA release was sensitive to low concentrations of GABA, CGP55845 may act as a GABA(A) rho receptor antagonist, and neither bicuculline nor baclofen had any effect on DA release, ethanol may be acting on extrasynaptic GABA(A) rho receptors on DA terminals to inhibit DA release in the NAc.

Suppresion of lymphangiogenesis using vegf-c trap

January 01, 2014 12:00 AM
Ryan Watkins, Univeristy of Utah Life Sciences The lymphatic system is responsible for controlling systemic fluid buildup. Lymphangiogenesis is a dynamic process involving sprouting and maintaining new lymphatic vasculature. Vascular endothelial growth factor C (VEGF-C) is known as a key growth factor through VEGF receptor 2 and 3 (VEGFR2 and VEGFR3). Interestingly, the cornea expresses VEGF-C but is alymphatic. We found that the soluble isoform of VEGFR3, which lacks tyrosine kinase domains, is responsible for the alymphatic nature of the cornea by sequestering endogenous VEGF-C. Although soluble VEGFR3 or soluble VEGFR2 can be useful for inhibition of VEGF-C derived lymphangiogenesis, they also bind VEGF-A. Inhibition of VEGF-A suppresses blood vessel formation, damaging tissue and creating additional side effects. The development of a new anti-lymphangiogenic drug, that only blocks VEGF-C, has many implications: preventing tumor metastasis and reducing rejection rates of tissue and organ transplants. VEGF-C mainly binds to VEGFR3 domain 2 and VEGFR2 domain 3. To develop an anti-lymphangiogenic drug that specifically binds VEGF-C the binding domains were inserted into a vector that produces a recombinant protein (VEGF-C trap) that sequesters VEGF-C, suppressing lymphangiogenesis. Mice in a cornea transplantation model were treated with VEGF-C trap. After 8 weeks, 60% of the treated cornea survived (no rejection) compared to 10% in the empty vector control group. A 60% transplant survival rate is one of the highest rates compared to other single treatment methods. Blood and lymph vessel area was calculated and showed a decrease in lymph vasculature but not blood vessel. Suggesting only VEGF-C activity was affected. In a tumor metastasis model, nude mice will be injected subcutaneously with cultured MCF-7 cells which have been transfected with VEGF-C trap or an empty vector. We expect to see a decrease of lymphatic vasculature in the mice injected with MCF-7 cells containing the VEGF-C trap and ultimately less metastasis.

Improved Understanding of Non-Pathogenic Biophysical States in a Class of Neurodegenerative-Related Proteins in Hopes of Establishing a Baseline for Protein-Misfolding Disease Characterization

January 01, 2014 12:00 AM
Joe Passman, University of Utah Life Sciences Neurodegenerative disorders and amyloidosis are thought to be a consequence of the misfolding of intrinsically disordered proteins (IDPs). In non-pathogenic states, IDPs are thought to manipulate their configurational ensembles (CEs) – through partially folding and/or forming secondary structure – to create binding sites for the multiple interaction partners necessary for cell-signaling, recognition, and regulation. An obstacle to accurate in vivo understanding of non-pathogenic mechanisms is that little is known about the impact of the crowded cellular environment on the global (i.e. partial folding) and local structural characteristics (i.e. secondary structure) of IDPs. It is difficult to understand why an IDP may misfold if little atomistic structural understanding exists regarding IDP functional mechanisms in non-adherent physiological states.

Variance of toxin producing clostridium botulinum in utah honey

January 01, 2014 12:00 AM
Tamara Fox, Weber State University Life Sciences Clostridium botulinum has been implicated in cases of infant botulism across the United States. It is recommended that infants under the age of one year not be fed honey because of the presence of C.botulinum spores. The goal of this project is to determine whether honey produced in small and large apiaries in Utah contain varying amounts of toxin producing C. botulinum. Honey samples will be collected from hives maintained in Utah and tested for the presence of toxin producing strains of C. botulinum. Samples will be dissolved and centrifuged to isolate the spores and then superheated to release the DNA. Testing will then be done through a multiplex polymerase chain reactions (PCR) using primers specific for 16s rRNA, Clostridia species, and toxins A, B, E, and F. The presence and type of toxin producing Clostridia species will be compared with a Chi-Squared Test of Independence. Research will be completed by February of 2014 and we expect small apiaries will have a lower frequency of toxin producing C. botulinum strains than large apiaries and that toxin phenotype will vary between the two groups. The results will increase understanding on the variance of C. botulinum in Utah honey and will contribute to further research on this topic.

Numerical solutions for problems in seepage flow

January 01, 2014 12:00 AM
Ammon Washburn, Brigham Young University Mathematical Sciences In many problems with seepage flow, there are non-linear problems that don’t have an easy analytical solution. There is already good research on what can be done in certain situations with these problems. I will present on numerical methods that have been proven to solve certain conditions and then present other solutions for similar problems where the numerical method isn’t so readily available in past research. I will implement the algorithms and compare results.

Examining the rainbow effect of metamaterial droplets

January 01, 2014 12:00 AM
Nirdosh Chapagain, Brigham Young University Mathematical Sciences Rainbow is an optical phenomenon created by reflection and refraction of light at the boundaries of water droplets. Descartes was the first to provide a geometric explanation for the optics of the rainbow. We use Descartes’ method to examine if rainbow effect is possible with metamaterial droplets. Metamaterials are artificial materials whose permittivity and permeability can be simultaneously negative hence, giving them negative index of refraction for certain frequencies. The recent extraordinary level of output in the field of metamaterials has resulted in examinations of applications of these substances to a variety of fields, including the arrow of time and cloaking. Many applications of metamaterials can create physical effects that were previously assumed impossible. In this study we have considered that our hypothetical droplet has negative refractive index for visible band of the electromagnetic spectrum. We also examine the effect of using composite metamaterial droplets.

Space Filling Curves and Their Applications With Metamaterials

January 01, 2014 12:00 AM
Steffan Larsen, Brigham Young University Mathematical Sciences The popularity of metamaterials has exploded with in the last decade. Metamaterials are materials that exhibit interesting properties not found in nature; one of the most widely known features being a negative refractive index. Metamaterials are composites different types of materials that give them their interesting properties. In addition to being composed of several element types, metamaterials also contain certain inclusions that influence their electromagnetic properties. Among these are space filling curves. Space filling curves are curves that are entirely contained within a specific area and yet can become infinitely long. In my research I investigated the properties of space filling curves and their application/benefit to the research surrounding metamaterials, specifically metamaterial antennas.

Gallai Colorings of Complete Graphs with Applications to the Theory of S-rings

January 01, 2014 12:00 AM
Bruce Chiarelli, Brigham Young University Mathematical Sciences A Gallai coloring of the complete graph on n vertices is an edge coloring such that no triangle has edges of three different colors.

Higher Dimensional Smooth Data Interpolation Techniques from Computational Geometry

January 01, 2014 12:00 AM
Ariel Herbert-Voss, University of Utah Mathematical Sciences A typical problem in numerical analysis is finding a smooth interpolation of a given data set such that information at extended positions can be evaluated. When extended to higher dimensions, there are few such algorithms available for practical use. Drawing from techniques used in geometric modeling we developed a practical algorithm with improved complexity by implementing the techniques in a query model as part of a MATLAB software package. From initial input data the algorithm builds a d-dimensional cell complex using Delaunay triangulation. Each cell has an associated interpolation function that satisfies Lipschitz continuity for each new point. During query time the user specifies a query point and the algorithm returns the interpolated function value. To reduce complexity related to point location within the cell complex, we implemented a binary tree search based on hyperplane decision criteria. Efficiency analysis completed using benchmark data sets indicated that the decision tree algorithm improved the efficiency from O(N) to O(N log N). This algorithm is the first of its kind that can be used on actual data sets and is the first implemented as a MATLAB package.

Models for Dementia Diagnoses with Distributed Learning

January 01, 2014 12:00 AM
Samantha Smiley, Brigham Young University Mathematical Sciences Dementia is a clinical syndrome characterized by an overall loss of cognitive ability. There are multiple forms of dementia with various causes and various impacts on the suffering individuals. Accurate diagnosis is essential to effective intervention and treatment. Currently, clinicians lack a biological marker that definitively distinguishes the different forms of dementia. Hence, they rely on physical exams, neuropsychological tests, and patient report to provide a diagnosis. Recent advances in brain imaging make it possible to obtain detailed maps of brain activity, which in turn may offer insight into many conditions such as dementia. Developing a predictive model from patient data, including brain scans, would greatly enhance the ability of clinicians to provide accurate diagnosis, and hence appropriate treatment, to their patients. Doing so, however, is not trivial as patient data is heterogeneously and non-uniformly distributed across sites, where some sites have far more data than others and calibration varies among scanners used. We report on the development of novel predictive models based on distributed learning for the effective diagnosis of dementia.

The stability of a semi implicit numerical scheme for a competition model arising in Math Biology

January 01, 2014 12:00 AM
Brennon Bauer, Southern Utah University Mathematical Sciences We study the Lotka-Volterra competition model. This model can be applied to Math Biology. We propose a Semi-Implicit numerical scheme, which guarantees that the populations are always positive. Also we prove that the numerical scheme is uniquely solvable, and is unconditionally stable.

Environmental and global carbon cycle signals recorded in 6 million year carbon isotope record from the Paleocene Black Peak Formation, Big Bend National Park

January 01, 2014 12:00 AM
Stephen Ruegg, University of Utah Physical Sciences The Black Peaks Formation (BPF) from the Tornillo Group in Big Bend National Park (BBNP) is comprised of a series of stacked paleosols and sandstone channels deposited by a fluvial system in a sub-tropical intramountain basin during the Laramide orogeny. Paleosols constituting the BPF display alternating drainage and development conditions. The BPF is bounded by the Late Cretaceous Javelina Formation and the Early Eocene Canoe Formation and is therefore thought to be of Paleocene age (65.5-55.8 million years ago). The BPF is an interesting target for paleoenvironmental reconstruction because little data have been generated from the Paleocene for sub-tropical regions, limiting the validation of global climate model predictions in these regions. However, previous attempts to resolve the age of the formation using biostratigraphy, magnetostratigraphy and chemostratigraphy gave ambiguous results limiting the potential of the BPF for paleoenvironmental reconstruction. We analyzed the carbon isotope ratio (δ13C ) of carbonate nodules collected from pedologically distinct paleosols throughout the BPF. δ13C of carbonates nodules found in reduced black paleosols are systematically 3-4‰ lower than δ13C from non-black paleosols from neighboring stratigraphic intervals. We hypothesize that this isotopic difference is related to the lower contribution of atmospheric CO2 to soil CO2 in water-logged and/or poorly drained black soils. Large-scale stratigraphic patterns of carbon isotope variations in carbonate nodules from non-black paleosols throughout the BPF strongly resemble well-documented secular changes in δ13C values of marine carbonates for the Paleocene. Several recognizable features are present in both curves, including the Paleocene Carbon Isotope Maximum (PCMI) and possibly the Late Danian carbon isotope excursion (LDE). These features provide a new basis for correlation of the BPF to the global geological timescale, and suggest that the Formation preserves a 6 million year record of deposition and paleoenvironmental conditions spanning the majority of Paleocene time (63-57 million years ago).

Nondestructive Isolation of Forensic Analytes with Ionic Liquids

January 01, 2014 12:00 AM
Mattie Jones, Dixie State University Physical Sciences New methods aimed at forensic analysis of sensitive, minute samples are critical to the intelligence community. In particular, successful extraction of dyes from materials found at crime scenes will provide innumerable benefits for matching, identifying, and finding origins of these materials and dyes. Current methods of isolating components of samples by their unique chemical properties are lengthy and often destroy important forensic evidence. Ionic liquids possess the necessary chemical properties to ensure efficient extractions, while maintaining the forensic signatures of the original materials. They also provide a one-pot approach that avoids intermediate species and increases analyte yield while extracting and separating constituents in a more efficient manner. By combining traceable dyes with an ionic liquid, the versatility of single-component extraction-separation-identification was demonstrated. Analysis using absorption and fluorescence spectroscopy validated complete extraction and recovery of trace analytes. Following extraction and isolation, identification by infrared spectroscopy has provided evidence of preserved quality and complete separation of material and dye. This novel approach to forensic analysis is advantageous particularly when sample sizes are extremely limited, but it can be readily scaled to larger applications. Developing a simple and affordable method of achieving specific molecular interactions provides a solution for often unidentifiable evidence in crimes. Harnessing the versatility of ionic liquids in a high-yielding recovery and efficient single-pot methods will enhance forensic abilities for the intelligence community and forensic investigators.

Analysis of Untriggered Small Events in the HAWC Telescope

January 01, 2014 12:00 AM
Ian Sohl, University of Utah Physical Sciences Current software in the High Altitude Water Cherenkov (HAWC) Telescope data collection system only triggers saving of events that pass a specified number of hits and energy. Our analysis of the untriggered (and unsaved) data will identify the number of potentially significant events that are bypassed by the existing software. By the application of a sorting function onto current Monte Carlo generated data, we can categorize incoming events into various types of particles, primarily muons, while also filtering out randomized noise from the photomultiplier tubes used in HAWC. Due to the relatively low rate and energy of the photomultiplier tube noise, many of the significant events for the untriggered set are potential useful particles. Our triggering algorithm, based on the energy, timing and saturation of the tanks is primarily focused on separating muons from the bulk of data. These raw rate data for small events are a relatively unexplored area for HAWC and measurements can be useful for a variety of calibration tasks for the telescope. They can be useful for understanding the impact of the atmosphere on the telescope’s data collection, as well as the triggering of the photomultiplier tubes through secondary sources. This untriggered data can also be used in a variety of useful forms not directly related to HAWC’s primary usage goals, primarily solar physics. Due to the relatively low energy and hit count from solar events, most of the data are thrown away by the triggering algorithm.

Geoelectric and Magnetic Characteristics of Fracture Traces: A Tool for Groundwater Exploration in Igneous Rocks

January 01, 2014 12:00 AM
Jeremiah Rundall, Utah Valley University Physical Sciences Utah Valley University has a long-term program of groundwater development in the Trans-Mexican Volcanic Belt in the state of Guanajuato, Mexico, in cooperation with Choice Humanitarian. Thus far, we have drilled a successful 50-m well in basalt and an unsuccessful 22-m well in rhyolite. Well sites have been chosen based on spring locations and fracture traces (linear features as seen on aerial photos). The objective of this study is to measure and model the geoelectric and magnetic characteristics of fracture traces as a means of determining which fracture traces are most indicative of actual fractured rock. Thus far, studies have been carried out on 20 fracture traces in rhyolite in the Trans-Mexican Volcanic Belt, six fracture traces in rhyolite/diorite/monzonite of the La Sal Intrusives in the La Sal Mountains of Utah, and one fracture trace in rhyolite of the Soldiers Pass Formation west of Utah Lake. The total magnetic field has been measured at about 1-m spacing along profiles perpendicular to fracture traces using the Geometrics G-856 Proton Precession Magnetometer. Geoelectric soundings for resistivity, chargeability and self-potential have been carried out both on and off fracture traces using the Iris Instruments Syscal Junior Resistivity Meter with the Schlumberger array parallel to the fracture trace at spacings in the range AB/2 = 2.29-137 m. Geoelectric profiles have been carried out perpendicular to fracture traces (array parallel to the fracture trace) at spacings AB/2 = 15.2 m and 137 m. Geoelectric and magnetic modeling is being carried out using the 1X2D-GM Magnetic Interpretation Software and the 1X1D Sounding Inversion Software. Preliminary results indicate that some fracture traces are associated with both magnetic and electrical resistivity lows consistent with intermediate depth (~ 50 m) fractured rock, although not all fracture traces have these characteristics. Further results will be reported at the meeting.

Optimizing the measurement of monomethylmercury in natural waters by direct ethylation

January 01, 2014 12:00 AM
Christopher Mansfield, Westminster College Physical Science The method currently used to measure monomethylmercury (MMHg) in natural waters involves a lengthy distillation step in order to remove certain ions and dissolved organic matter that have been reported to interfere with the subsequent reaction in which MMHg is ethylated. It has recently been reported that the analysis of MMHg in seawater by direct ethylation was successfully carried out, thus removing the day-long distillation. However, the effect of many potential interfering ions and compounds on this method have not been characterized, and it has not been tested for use in natural freshwaters or the hypersaline waters of the Great Salt Lake. Thus, these became the two goals of this project. We found that optimal ethylation conditions included buffering samples to pH 4.0-4.1, reducing the amount of sodium tetraethylborate, adding EDTA to complex interfering trace metals, and adding chloride to overcome interferences by thiols and organic matter. We have since employed this improved method to analyze MMHg in natural water samples from fresh and saline lakes, achieving > 90% MMHg spike recoveries without the use of distillation.

Exploring Norbornenyl Solvolysis Rates with Electronic Structure Computational Methods

January 01, 2014 12:00 AM
Byron Millet, Weber State University Physical Sciences The relative solvolysis rates of norbornenyl derivatives have been of interest. To date, only one other norbornenyl compound has been found that solvolyzes slower than anti-7-norbornene. It has been suggested that through-space interactions between π-bonds plays a significant role in stabilizing the carbocations. However, through-space interactions do not account for the similar observed solvolysis rates of nearly identical compounds both with and without adjacent π-bonds. Studies have shown that the stability of these compounds is significantly affected by σ-bond interactions. We report on our current computational study of the relative energies of several norbornenyl compounds with and without adjacent π-bonds to evaluate both π-bond and σ-bond effects on the stability of the norbornenyl cations. The effect of a ketone functional group on the relative stability of the carbocation is also analyzed. The literature solvolysis rates of the various norbornenyl derivatives and the stability of their respective cations is compared. With some exceptions, a correlation was found between the stability of a derivative’s carbocation and its respective rate of solvolysis.

Improving a Laser Color Sensor Based on a Photodiode Array Using Measurements Made with a 461nm Tunable Laser

January 01, 2014 12:00 AM
Tyler Jones, Brigham Young University Physical Science This project takes advantage of an inexpensive integrated circuit to create a wavelength meter. The circuit has an array of photodiodes, each of which has an optical filter of a different color. The filters cause each diode to respond differently to different wavelengths of light. The relative amplitudes of the signals are then used to compute a wavelength based on known responses for various wavelengths recorded in a calibration stage. The project focuses on improving precision of the hardware and developing an algorithm to do the computation.

Protein phosphatase (PP) 1 and PP2B do not contribute to palmitate-induced disruption of eNOS enzyme function.

January 01, 2014 12:00 AM
Ting Ruan, University of Utah Physical Sciences Cardiovascular complications are more prevalent in patients with diet-induced obesity and type 2 diabetes. Both of these conditions are associated with elevated levels of free fatty acids (FFAs). Elevated FFAs might precipitate cardiovascular complications by disrupting endothelial nitric oxide (NO) synthase (eNOS) enzyme function. The physiologically abundant saturated FFA palmitate decreases eNOS phosphorylation at serine 1177 (p-eNOS S1177) in a ceramide and protein-phosphatase 2A (PP2A) -dependent manner. p-eNOS S1177 is a positive regulatory site on the eNOS enzyme. As such, p-eNOS S1177 to total eNOS can be used as an estimate of eNOS enzyme function. We sought to determine the extent to which two other phosphatases that are abundant in the cytosol i.e., protein phosphatase 1 (PP1) and protein phosphatase 2B (PP2B) might contribute to palmitate-induced reductions in p-eNOS S1177 to total eNOS. Bovine aortic endothelial cells (BAECs) were treated for 3 hours with 500 uM palmitate or vehicle in the absence and presence of the PP1 inhibitor tautomycin (3 uM). p-eNOS S1177 to total eNOS was assessed using immunoblotting procedures. Palmitate-induced reductions (30±3%, p<0.05, n=3) in p-eNOS to total eNOS were similar in the absence and presence of tautomycin. These data indicate that PP1 does not contribute to palmitate-induced disruption of eNOS enzyme function. Next, BAECs were treated for 3 hours with 500 uM palmitate or vehicle in the absence and presence of the PP2B inhibitor cyclosporine (100nM). Palmitate-induced reductions (31±4%, p<0.05, n=3) in p-eNOS to total eNOS were similar in the absence and presence of cyclosporine. Taken together, these data suggest that neither PP1 nor PP2B contribute to palmitate-induced reductions in p-eNOS S1177 to total eNOS.

Controlled Zinc Oxide Hexagonal Prism Formation with Ethanol Amines

January 01, 2014 12:00 AM
Brielle Woolsey, Brigham Young University Physical Sciences A method of forming zinc oxide (ZnO) single crystal hexagonal prisms is derived from a standard sol-gel method. The new synthesis requires water, zinc acetate, and diethanol amine (DEA) to create a zinc hydroxide/zinc hydroxide acetate gel, which forms single crystal hexagonal prisms upon heating. Characterization of the gel was done by XRD as well as by XRD high temperature chamber (HTK) to determine the role of temperature in prism formation. SEM images showed hexagonal prisms were of uniform size (approx. 0.5 — 2 µm). TEM and electron diffraction images showed a change from randomly oriented particles to an ordered single crystal after heating. Ethanol amines, heating of the gel, and the zinc acetate salt proved to be critical to prism formation.

Evaluation of potential impact of tar sands mining on the integrity of groundwater quality in PR Spring, Uinta Basin, Utah

January 01, 2014 12:00 AM
Mallory Millington, University of Utah Physical Sciences Groundwater in the western United States is a limited and important resource for agriculture, industry, and residents alike. Knowing the movement of groundwater is critical to understanding the potential of groundwater contamination from human activities. While groundwater flow is difficult to quantify, it typically recharges in high elevation and discharges towards lower elevation. The first commercially-approved tar sands mine in eastern Utah is located on a ridgetop in the PR Spring area within the high plateaus on the south rim of the Uinta Basin. To evaluate the potential of groundwater contamination due to tar sands mining a study was conducted to understand groundwater flow in the PR Spring area, specifically the canyon directly south of the tar sands mine called Main Canyon. Water samples were taken from four groundwater springs at elevations ranging from 7040 to 8040 ft in or near Main Canyon. Water quality measurements taken in the field showed that the lower springs exhibited higher conductivity (900 vs. 636 μS/cm) and lower dissolved oxygen (30% vs. 88% saturation) than the higher elevation springs. This suggests that the lower springs have had a greater amount of water-rock interaction and so are chemically more evolved than the springs at higher elevations. SF6 age dating indicated that the high elevation springs are younger than the lower elevation springs, 5.5 vs. 16.0 years since recharge respectively. The field parameters and SF6 age data all indicate that higher elevation springs are younger and less chemically evolved than the water at lower elevations. This indicates that the springs in Main Canyon are sourced from local recharge at the ridgetops. Given these findings the tar sands mine should consider taking preventative measures to protect groundwater resources.

Catalysis of the Reduction of Sodium Borohydride with Microenvironments of Gold Nanoparticles

January 01, 2014 12:00 AM
Frederickk Sudbury, University of Utah Physical Sciences Triphenylphosphine stabilized gold nanoparticles were synthesized using a method developed previously by the Jennifer Shumaker-Parry group. Aminated silica colloids were obtained from the Ilya Zharov group. The gold nanoparticles were adhered to the silica colloids using a method developed for another purpose by the Zharov group. The presence of the particles on the silica colloids was confirmed using both scanning and transmission electron microscopy. The catalytic activity of the gold nanoparticles both with and without adhesion was investigated. It was found that free nanoparticles had significant catalytic activity, in agreement with previous research. Gold nanoparticles attached to silica colloids do not seem to exhibit the same level of catalytic activity as the free particles. It was also found that not all the gold nanoparticles adhered to the surface of the silica particles. Experiments were conducted to determine if there was a critical concentration of silica colloids that would allow for high levels of adhesion of the gold nanoparticles. It was found that only by adding a significant excess of silica colloids to the solution can all the gold nanoparticles be removed from the solution. It was also found that the silica can be saturated with gold nanoparticles by including a small amount of them in a very concentrated gold nanoparticle solution. Further studies for functionalization of the silica colloids and the ability to physically isolate the silica with gold nanoparticles from free nanoparticles are currently in progress.

Patterning and Functionalizing Carbon Nanotube Forests for Antigen Detection

January 01, 2014 12:00 AM
Benjamin Pound, Utah State University Physical Sciences Carbon Nanotube (CNT) Forests are vertically grown carbon nanotubes. They can be as tall as millimeters, with radii from less than one nanometer (single-walled) to tens of nanometers (multi-walled). Their high surface area to volume ratio provides a unique material system for biosensor applications. However, the CNT surface does not provide covalent bonding sites to many antibodies of interest. One approach is to attach linker molecules with aromatic rings via π-stacking to the CNT surface and activating the linker molecules to bind covalently to specific antibody molecules. Unfortunately, the conventional solution-based functionalization approach often leads to collapse of the CNT forest and hence a significant loss of binding sites. In this presentation we demonstrate that CNTs can be lithographically defined to form various structures that are resistant to liquid-induced collapse. We show that the CNT forest can be functionalized with 1,5-diaminonaphthalene as a linker molecule and its coverage can be characterized by fluorescence spectroscopy.

Magnetic Susceptibility of Tree Leaves as a Simple, Cost-Effective Means of Monitoring Air Quality

January 01, 2014 12:00 AM
Lucas Lloyd, Utah Valley University Physical Sciences The high cost of air quality monitoring stations makes it difficult for citizens or local governments to monitor air quality in their own neighborhoods. For example, Utah County, Utah, with an area of 2141 mi2, has only four air-quality monitoring stations: (1) north Provo close to both Provo High School and Brigham Young University (2) Spanish Fork Airport (3) near State Street in Lindon (4) just south of SR-92 on 6000 W in Highland. The air-quality stations monitor levels of CO, NO2, O3, PM-2.5 (particulate matter smaller than 2.5 microns), and PM-10. The objective of this study is to find a much cheaper method of measuring air quality. The objective was addressed by measuring the magnetic susceptibilities of 10 replicates each of the leaves of 12 species of trees (cypress, crab apple, elm, flowering pear, green ash, honey locust, linden, Norway maple, pine, red maple, Russian olive, spruce) collected within a two-mile radius of each of the four air-quality monitoring stations in Utah County. After air-drying and crushing the samples, both low-frequency (0.46 kHz) and high-frequency (4.6 kHz) magnetic susceptibilities were measured with the Bartington MS3 Magnetic Susceptibility Meter. The best correlations between tree leaf magnetic susceptibilities and air-quality parameters were between the three-year average of PM-2.5 and the high-frequency magnetic susceptibility of leaves of pine (Pinus aristata) (R2 = 0.87) and Norway maple (Acer platanoides) (R2 = 0.86). The correlation was used with measured high-frequency magnetic susceptibilities of pine to estimate PM-2.5 in two unmonitored locations heavily impacted by highway traffic (corner of 800 N and I-15 and corner of University Parkway and I-15, both in Orem, Utah) on one day in August 2013. It was found that estimated levels of PM-2.5 were 9.5 µg/cm3 and 8.9 µg/cm3, respectively, which were within the EPA PM-2.5 Standard of 12.0 µg/cm3.

Mode transitions in strings with an abrupt change in mass density

January 01, 2014 12:00 AM
Nathaniel Wells, Utah Valley University Physical Sciences Previous research with bottle-shaped thermoacoustic prime movers has revealed hysteresis with transitions to higher modes as the cavity length is varied. A string with an abrupt change in mass density was studied to investigate potentially similar behavior. Three base guitar strings were studied at three different tensions with weights of 25, 30, and 35 lbs. Each string consisted of a “thin side” that was stripped to the stainless steel core and a “thick side” with an outer wrapping of nickel around the core. The strings studied had diameters of 0.65, 0.45, and 0.50 mm on the thin side and 2.14, 1.31, and 1.24 mm on the thick side, respectively. An anchor was attached on one end of a short board with a pulley at the other for hanging the weight. The end of the thick side of the string was attached to the anchor, and the string was guided over the pulley, with the change in mass density occurring approximately 12 cm from the pulley. Measurements were taken after placing a glass jar under the thick end of the string, between 42 cm and the position of the change in mass density, in 3-cm steps. The string was plucked and the dominant frequency was recorded with a microphone at each location. Frequency data is generally consistent with a solution to a 1D wave equation. Preliminary results indicate mode transitions occurring for all strings, with several hysteresis region candidates.

Investigating Anthropogenic Impacts on the Utah Lake-Jordan River Transition Zone Using a Multi-proxy Approach

January 01, 2014 12:00 AM
Buchanan Kerswell, Utah Valley University Physical Sciences This project is designed to investigate anthropogenic impacts on the geochemistry and physical characteristics of Utah Lake-Jordan River transition zone, in Utah Valley, Utah. The zone has experienced dramatic, multifaceted shifts since European settlement in 1847, especially in recent decades. Our chosen study location is uniquely situated to capture changes recorded in the sediment cores due to land use, nutrient enrichment, vegetation shifts and river dynamics since pre-settlement.

Correlation analysis of military aircraft jet noise

January 01, 2014 12:00 AM
Zachary Anderson, Brigham Young University Physical Sciences Correlation analysis is useful in extracting spatiotemporal relationships between signals and can be used to examine features of near-field jet noise for source properties. Characteristic correlation envelopes determined by Harker et al. [JASA 133, EL458 (2013)] can be used to relate correlation lengths to fine and large-scale turbulent structures. As an extension, cross-correlation shows spatial variation in jet noise and further reveals the transition between short (fine-scale) and long (large-scale) correlation lengths. These analyses are applied to a military jet dataset of a ground based linear microphone array positioned 11.6 m from the jet axis. Correlation analyses over multiple engine conditions and observation directions are reported. In particular, a maximum correlation coefficient greater than 0.5 exists over a range spanning multiple wavelengths in the region of greatest overall sound pressure level at military power. [Work supported by ONR.]

Methods to decrease error in conductivity measurements of highly disordered materials

January 01, 2014 12:00 AM
Phillip Lundgreen, Utah State University Physical Sciences By developing a low-noise, high-voltage battery power supply, system noise has been reduced, increasing accuracy of conductivity measurements of highly disordered insulating materials. The method involves a simple parallel plate capacitor setup with the sample sandwiched between electrodes, a voltage potential applied to one electrode, and a measurement device applied to the back electrode measuring current. Previous methods involved use of a commercial power supply with a claimed low noise and high linearity, but with a low AC output ripple. At high voltages (1000 V), however, the noise became apparent in the readings and an unacceptable uncertainty was introduced in our precision conductivity measurements. Through the use of a stable dc battery high-voltage power supply, we were able to reduce noise in current measurements and achieve a more accurate measurement of conductivity for various samples.

General Approach for Engineering Small-Molecule-Binding DNA Split Aptamers

January 01, 2014 12:00 AM
Alexandra Kent, University of Utah Physical Sciences Prescription drug overdose and abuse is a leading cause of death in the United States. It is a serious issue and has become increasingly problematic as opioids are being prescribed at a higher frequency. For this reason, fast, accurate detection of small drug molecules is crucial. The current standard for use in clinical drug detection is an enzyme-linked immunosorbent assay (ELISA) that uses a series of antibodies to bind to the target drug and enable quantification via a colorimetric output. However, the antibodies used in an ELISA often cannot distinguish between similar molecules. Aptamers are short sequences of DNA that have emerged as a promising alternative to antibodies, as they are generated in vitro, where negative selections can be used to increase target selectivity. These aptamers can be cleaved to make split aptamers that only assemble in the presence of the target small molecule. One inherent problem of this system is the need for split aptamers that are selective for their small molecule targets. While there are many known aptamers, there are only a few known split aptamers that bind small molecules. Separating aptamers with a privileged, three-way-junction structure provides a reliable method to generate new split aptamers.

Creation of coherent complex pressure measurements through overlapping scan-based measurements

January 01, 2014 12:00 AM
Jazmin Myres, Brigham Young University Physical Sciences In scan-based array measurements, stationary reference sensors are needed to temporally correlate the different measurement scans and produce coherent complex pressure fields. Because the number of references required increases with the number of subsources contributing to the sound field, an extended, partially correlated source comprising many ill-defined sources can result in significantly increased measurement complexity. A different approach to creating spatiotemporally coherent pressures is demonstrated here. Scan based measurements of a partially coherent line source have been taken in an anechoic chamber. This experimental data has been used to explore “stitching” together a complex pressure field by spatially overlapping measurement scans instead of using separate reference channels. Various methods of stitching have been explored and the most robust method identified. Unwrapping of intrascan phases is first accomplished with a two-dimensional phase unwrapping algorithm. Individual scan positions are then stitched together using median phase differences between multiple adjacent scans to create coherent planes of data. Amplitude-stitching is done by averaging across scans and preserving the integrated squared pressure across the overall aperture. This method has been verified using reference microphones. This stitching method has been applied to scan based measurements of a military aircraft, exhibiting its effectiveness dealing with a partially correlated complicated source. This method works well for low-frequency jet data, where there is not a ground-based interference null creating a physical phase discontinuity. This technique provides direction for efficient experimental design for scan-based array measurements of extended sources. [Work sponsored by ONR.]

Evolution of Burrowing Mayflies: Tusks be gone

January 01, 2014 12:00 AM
Stephanie Bartlett, Utah Valley University Physical Sciences Ephemeroptera, commonly referred to as mayflies, are found throughout the world. Within the order of Ephemeroptera resides a superfamily, Ephemeridea, commonly called burrowing mayflies. This common name was acquired due to certain physical and behavior characteristics present as nymphs. Ephemeridea nymphs live in the silt of aquatic environments and have adaptations for burrowing which include strong legs, as well as mandibular tusks. One exception to this is the family Behningiidae, which burrow, but lack the commonly associated mandibular tusks. Morphological data supported Behningiidae as sister to the other tusked burrowing mayflies, indicating that first burrowing behavior evolved and was later followed by the development of tusks(McCafferty; 1975 and 2004). While morphological data provides important insights into the evolution and phylogeny of mayflies, the development of molecular phylogenetics offers new contributions when determining evolutionary relationships within this superfamily. Objective: The purpose of this study is to investigate the relationships of the families of burrowing mayflies in order to test the hypothesis of tusk evolution. Methods: The specimens were acquired from collection efforts and colleagues. For each specimen the following laboratory procedures were carried out: DNA extraction, gene amplification via polymerase chain reaction, visualization via gel electrophoresis, and DNA sequencing. The genes targeted for sequencing included 12S mitochondrial rDNA, 16S mitochondrial rDNA, 18S nuclear rDNA, 28S nuclear rDNA, H3 nuclear protein coding, and CO1 mitochondrial protein coding. Data was also acquired from Genbank in order to augment missing data. Taxon sampling consisted of around 20 ingroup and 5outgroup taxa. Phylogenetic relationships were estimated using Maximum Parsimony, Maximum Likelihood, and Baysian methods. Conclusion: The families Behningiidae, Potamanthidae, Palingeniidae were supported as monophyletic. Behningiidae nested well within the other burrowing families. Hence, tusks evolved and were subsequently lost in the family Behningiidae even though it retained the burrowing lifestyle in the nymph.

Band gap tunability of protein-based ferrhihydrite nanoparticles

January 01, 2014 12:00 AM
Stephen Erickson, Brigham Young University Physical Sciences “The spherical protein ferritin has often been used to fabricate nanoparticles of various shapes and compositions with its walls. Ferritin occurs naturally with a ferrihydrite (FeOOH) mineral core, but it has also been used to synthesize nanoparticles of several other semiconductors. While the methods for creating these nanoparticles within ferritin are well established, the characterization of such nanoparticles is not. Previous studies on native ferrihydrite core ferritin disagree on the band gap, giving values anywhere from 1.1-3.5 eV, depending on the method. We have used absorption spectroscopy to measure these band gaps with an unprecedented accuracy of up to .01 eV. This method also allowed us to determine that ferrihydrite nanoparticles are indirect gap semiconductors. By employing this method on particles of various sizes, we have shown the effects of quantum confinement, resulting in variations in the band gap. We also provided the first ever direct evidence that ferritin works to crystalize its core with time, an effect that has long been theorized but never observed. By characterizing the effect of size and time on nanoparticle band gap, we have shown the potential for selectively tuning that gap. This opens up a world of possible applications in light harvesting and photo detectors. By controlling the band gap, we will be able to select which wavelengths of light are absorbed, allowing for full spectrum photovoltaic cells and wavelength specific optical detectors. Future studies will focus on nanoparticles of other metal hydroxides and various anion replacements to further expand our tunable range of band gaps.

An insulating gasket for electrical measurements in a diamond anvil cell

January 01, 2014 12:00 AM
Jasmine K Bishop, University of Utah Physical Sciences In my presentation, I will discuss the method of creating insulating gaskets for high pressure experiments using diamond anvil cells. In standard diamond anvil cell pressure experiments, metal gaskets are typically employed. However, in order to study the electric and magnetic properties of a sample without worrying about interference of the metal gasket itself, insulating gaskets are used. The insulating material needs to be ductile and yet hard enough to maintain a certain level of structure. Epoxy is ideal for ductility but is not hard enough to maintain a diamond indent under pressures generated by diamond anvil cells. When mixed with a diamond powder however, the mixture is both ductile and structurally sound. In this study we have modified the previous methods of insulating gasket preparation by addition of a metal sheet to increase the strength and ductility of the gasket. The part of the gasket that is metal can be used as an electrical lead to measure sample’s conductivity. In this design the mixture of diamond and epoxy is applied to a thin 100 micrometer metal sheet and a focused beam of high power IR laser is used to drill a hole in the gasket . I will describe the design of the optical path and the details of the gasket preparation and will present some of the gaskets that I have made.

Effects of Environmental Pollutants on Endophytes in Rumex crispus

January 01, 2014 12:00 AM
Yonic Michaca, Utah Valley University Physical Sciences It is well known that some of the worst air pollution in the country each winter is found along the Wasatch front in northern Utah. This study examines the effects of environmental pollutants on the production of the novel compounds produced by the endophytes found in Rumex crispus. The Rumex crispus plant was selected due to its natural medicinal uses. It is anticipated that environmental pollutants have an effect on the production of bioactive compounds in order to protect their plant host from foreign pathogens. The theory is that the more stressful environment a plant lives in, i.e. desert climates, high altitude, and man-induced stresses such as pollution, the more bioactive compounds the endophytes produce as a response to protect their plant host. This study analyzes the effects of environmental pollutants along the Wasatch front on the production of novel bioactive compounds produced by the endophytes found in Rumex crispus. Plant samples are also collected from sites near the Wasatch front, but they are not exposed to the same amount of air pollution to be used as a control.

Lyman-alpha Emission as a Probe of Galaxy Environments

January 01, 2014 12:00 AM
Joshua Wallace, University of Utah Physical Sciences We study the effect of the circum-galactic gas environment on the observed Lyman-alpha emission from Lyman-alpha emitting galaxies. These galaxies are primarily high-redshift star-forming galaxies that are important in understanding both galaxy and universe evolution. The Lyman-alpha photons emitted from these galaxies should hold valuable clues about the general environmental properties (such as gas velocity, density, and distribution) around galaxies, since the photons can be strongly affected and scattered by the neutral hydrogen atoms that make up the majority of the gas. However, explaining exactly how a galaxy’s environment affects its Lyman-alpha emission is very complex and currently cannot be predicted with complete certainty — every time a Lyman-alpha photon interacts with a hydrogen atom, its direction and frequency are changed, which in turn affects how far it will travel before the next interaction. We study the environmental effects on Lyman-alpha emission properties by applying Monte Carlo Lyman-alpha radiative transfer modeling to simple analytic models and find an important role of the anisotropic distribution of gas in determining the observed photometric and spectral properties of Lyman-alpha emission. We further perform a detailed investigation by applying the radiative transfer modeling to realistic star-forming galaxies in high-resolution cosmological galaxy formation simulation. From our analysis so far, we find the Lyman-alpha emission from the models shows a strong dependence on viewing angle, as well as correlations between observed spectral features and environmental conditions. We plan to model and analyze a large sample of simulated galaxies to better describe and statistically quantify the above dependence and correlations. Our study will lead to a better understanding of the effects galaxy environment on the observed Lyman-alpha emission and in turn provide a theoretical guide on how to use observed Lyman-alpha emission to learn about the environments of star-forming galaxies and hence galaxy formation and evolution.

Precise External Timer

January 01, 2014 12:00 AM
Adam Kingsley, Brigham Young University Physical Sciences In the construction of various sensors in the lab, highly accurate integration times are required. It is advantageous to have a precise external timer to run the circuitry contained in the sensor. By taking a signal in the range of megahertz down to hertz or milihertz range, it is possible to control the start and stop times for circuits. Overall this means that every time a measurement is taken it represents the same length of time.

Source of Elevated Free Carbon Dioxide Levels at the Springville State Fish Hatchery, Springville, Utah

January 01, 2014 12:00 AM
Christopher Clements, Utah Valley University Physical Sciences DWR operates the Springville Fish Hatchery raises rainbow trout for stocking lakes and ponds. Since February 2011 the hatchery has observed excessive physical activity among the trout, including jumping out of raceways onto the concrete walkways. Excessive physical activity can result from free carbon dioxide levels above 10 ppm and free carbon dioxide levels in the hatchery water have been measured as high as 17 ppm. They have added some treatment processes before it enters the hatchery and greatly reduced the food intake of the trout, which increase costs and reduce production. This has reduced free carbon dioxide levels to only 15 ppm. The objective of this study is to determine the source of elevated free carbon dioxide and recommend solutions for the problem. The water source for the hatchery is a shallow pond, which is fed by 16 springs, both warm and cold. The objective is being addressed by measuring discharge from each spring and collecting water samples for measurement of free carbon dioxide in addition to other common stressors of rainbow trout. Free carbon dioxide, temperature, pH, electrical conductivity and dissolved oxygen are being measured on-site, while hardness, nitrite, ammonia, copper, iron and zinc are being measured. Free carbon dioxide levels at some warm springs have been measured as high as 25 ppm. Mixing calculations will be carried out to determine whether the discharge and water quality of each spring is consistent with the water quality currently entering the hatchery and whether the removal of one or more springs would result in sufficient water within the acceptable ranges for rainbow trout. If calculations estimate free carbon dioxide significantly lower than the measured free carbon dioxide in the water entering the hatchery, it is possible that additional elevated free carbon dioxide results from the decay of organic matter.

Trace element concentrations showing signs of urbanization along the Provo River, Utah

January 01, 2014 12:00 AM
Tucker Chapman, Brigham Young University Physical Sciences The Provo River provides the opportunity to study three systems from low to high anthropogenic activity. Its headwaters are in an undeveloped area of the Uinta Mountains. The river then moves into a valley that is developing from an agricultural to an urban system. The lower portion of the river moves into the urbanized Utah Valley. These systems give the ability to study the changes in trace element chemistry from a variety of sources. Trace element data were collected during the 2013 water year including the spring snow melt. Correlation was analyzed among the different trace elements using multivariate statistics in order to discover trace element sources. The element loads were calculated using USGS Load Estimator (LOADEST) software. The study has implications involving the drinking water of >2 million people in the Utah and Salt Lake valleys and the changes that the shift from agriculture to urban is causing.

Preventing Mode-hops in Extended-cavity Diode Lasers

January 01, 2014 12:00 AM
Enoch Lambert, Brigham Young University Physical Sciences Extended-cavity diode lasers are important tools in scientific research. Current extended-cavity diode laser systems will change frequency unpredictably while operating, requiring extensive effort to tune them back to the right frequency. We seek to implement a novel method of extended-cavity diode laser control that adds an extra control system to prevent these unpredictable changes.

Synthesis, Analysis, and Biological Activity of Novel Organoarsenic Products

January 01, 2014 12:00 AM
Jared Weaver, Southern Utah University Physical Sciences Organoarsenic are compounds containing carbon and arsenic. These compounds have been shown to have biological activity and pharmaceutical properties, and some organoarsenic compounds have even displayed potential for aiding in current medical problems up to and including possibilities as anticancer agents. Currently relatively little research is being done on organoarsenic compounds by the pharmaceutical community due to current views from the media based largely upon the toxicity of their inorganic arsenic counterparts (inorganic compounds are compounds not containing carbon), organoarsenic compounds however have significantly toxicity. Also, like with any medicine, toxicity depends predominately upon concentration, and given a high enough concentration organoarsenic compounds would logically follow the same trend. Synthesis of a large variety of novel organoarsenic compounds has been found via a reaction involving a variety of aldehydes or ketones and 2-(Dichloroarsino)benzaminium chloride. Research will focus on synthesis, isolation, and characterization of a library of organoarsenic compounds and then determine their respective biological activities. Synthesis will determine mechanistic requirements of said reaction and will be done to produce a diverse selection of organoarsenic compounds. Compounds will be isolated through precipitation of product and vacuum filtration of formed product. Structure will be determined through IR, NMR, and Gas Chromatography/ Mass Spectrometry, and through X-ray crystallography. Biological activity is suspected with potential for testing via a Kirby-Bauer Disc treatment. It is hypothesized that novel organoarsenic products will be formed by reaction of 2-(Dichloroarsino)benzaminium chloride with all carbonyl compounds containing an alpha carbon with at least one proton used, and that compounds synthesized will inhibit bacterial growth.

Structural health monitoring of natural arches in the Moab area

January 01, 2014 12:00 AM
Ben White, University of Utah Physical Sciences We evaluated the ambient noise wavefield of select arches in the Moab area as a means to assess changes in their structural health over time. Our measurements revealed that the fundamental frequency of vibration at Mesa Arch and Corona Arch are both in the range of 3 Hz, while other spectral peaks are likely related to higher-order vibrational modes. We use numerical modeling for modal analysis in an attempt to predict and visualize the various modes of vibration and their frequency Resonant frequencies are projected to change with snow or rain loading or after a strong earthquake. By monitoring resonant frequencies over time and under various environmental conditions, our goal is to detect reversible and/or irreversible changes that may accompany damage of these arches.