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Utah's Foremost Platform for Undergraduate Research Presentation

2015 Abstracts

Accuracy of Blood and Fluid Loss Estimation: A Comparison Among Healthcare Team Members

January 01, 2015 12:00 AM
Diana Carter, Brigham Young University Health Purpose:

Developmental Testing in a Lamb Model

January 01, 2015 12:00 AM
Ashley Havlicak and Joanna Beachy, University of Utah Health Background:

The Effects of Sexual Assault on Memory and Consciousness: A Retrospective Chart Review

January 01, 2015 12:00 AM
John Rossi, Julie Valentine, Leslie Miles, Linda Maybe, and Julie Melini, Brigham Young University Health The purpose of this study is to explore the effects of sexual assault on memory and consciousness in 314 victims in a Mountain West community using retrospective chart review. Altered mental awareness and/or loss of consciousness during a sexual assault are widely unexplored phenomena. A majority of assaulted individuals experience a varying degree of loss of consciousness during an assault – resulting in memory loss and conflicting evidentiary reports creating challenges during an investigation and prosecution. Statements written by a forensic nurse based on patients’ telling of the sexual assault (analyzed in Nvivo10) were placed within the following categories: memory loss; decreased feelings of mental alertness or awareness; symptoms of tonic immobility; detachment from self, environments and/or situation; reports full loss of consciousness; and/or awoke to assault. Quantitative data from patients’ answers to questions related to their memory of the nature of the assault was analyzed through descriptive statistics in SPSS, resulting in the following statistics: 58.3% reported having a loss of consciousness or awareness, 54.2% reported “unknown” to 1 or more questions about the nature of the assault, 37.8% reported “unknown” to 4 or more questions, 17.3% reported “unknown” to all questions. Additionally, a Chi square test for independence found patients with memory loss/altered consciousness were associated with the following variables: patients with mental illness and/ or use of psychotropic medications (p=0.025) and use of alcohol prior to assault (p=0.000). Medical teams, law enforcement, and judicial representatives must understand the impediments associated with a victim suffering from altered mental status caused by neurobiological and psychophysical effects of sexual trauma; thus, creating an atmosphere that avoids re- traumatizing a patient and providing for optimal care. This research will supplement other studies focusing on neurobiology/sexual assault trauma and foster greater understanding of the effects of sexual assault on memory and consciousness.

Learning History: Understanding Organizational Learning in a Hospital

January 01, 2015 12:00 AM
Kalene Mears, Brigham Young University Health The purpose of this project is to compile a learning history for a hospital unit, documenting patterns of past adaptation within a clinical microsystem that can be magnified to help the system continue to improve. The goal in healthcare is to create an adaptable system, where changes are continuously made as problems are identified to prevent harm from care. Through a learning history, a hospital unit can identify how they have already solved problems in the past and identify patterns of adaptation that can be replicated to increase reliability within the organization. This project has the potential to help a hospital unit improve its reliability in providing quality patient care and reduce preventable patient harm. To obtain the information about the unit’s history, key team members will be interviewed using an appreciative approach to identify strengths and patterns of successful adaptation. Interviews will highlight positive features of this team to foster feelings of success and achievement, promoting desire to continue improvement. Clinical data will supplement the interviews to show a full picture of how the unit adapted to its situation. The transcribed interviews will then be distilled to highlight the critical, meaningful points in the plot line where learning and adaptation took place. This resulting manuscript is the tangible learning history. Internal dissemination will involve sharing the learning history with the organization and facilitating group discussions about the findings with members of the organization. Through this process, we anticipate the unit will be able to promote more effective interventions to improve patient care.

Are We as Healthy as We Should Be? A Comparison of Income and Diseases of Affluence

January 01, 2015 12:00 AM
Cody Craig and Charles Yeager, Snow College Health Logically, a rise in income should lead to a healthier population. Diseases like malaria, cholera, and HIV/AIDS are associated with poverty, low rates of education, and poor infrastructure in many parts of the world. In populations with higher per capita income (or “wealth”), these diseases are not as common. However, while our higher socioeconomic classes have fewer poverty linked diseases, is the overall health of people across Utah as high as we might expect it to be? Diseases like obesity, heart disease, and diabetes (known as diseases of affluence) are becoming more and more common, even though advanced health technology and healthcare availability increase. This project will examine the relationship between income level, diseases of poverty, and diseases of affluence. Data will be aggregated from a number of sources and mapped using a geographic information system. A regression analysis will be conducted to determine if variables are positively or negatively correlated with diseases of poverty and affluence in Utah.

Cross-talk Between Autophagy and Mitophagy Regulates Shear- induced Nitric Oxide Pr oduction in Endothelial Cells

January 01, 2015 12:00 AM
Rebekah Goodrich, Leenalitha Panneerseelan Bharath, Ting Ruan, Tetyana Forostyan, Ashot Sargsyan,

Electronic Cigarettes

January 01, 2015 12:00 AM
Jamie Slade, Utah Valley University Health Electronic cigarettes (e-cigarettes) are gaining in popularity. Unfortunately, this increase is occurring at a time when we lack a definitive understanding of the health hazards. It is important for professionals to understand e-cigarette users’ experiences and satisfaction with the devices in order to determine what may entice users to begin and continue using these devices.

Hysteresis and Motor Planning in Children with Autism Spectrum Disorder

January 01, 2015 12:00 AM
Daisha L. Cummins, Kodey Meyers, and Breanna E. Studenka, Utah State University Health Children with Autism Spectrum Disorder (ASD) exhibit rigidity of motor plans and difficulties planning and executing movements (Eigsti et al., 2013). Those with ASD may also have difficulty formulating new or switching between different motor plans. In typically developing individuals, sequential actions exhibit hysteresis, a phenomenon where a specific motor plan is influenced by recent, similar motor actions. We sought to determine if hysteresis was stronger in children with ASD. A rotation motor task measured the rigidity of motor planning (hysteresis) of five ASD children, and 5 control participants. A stick was placed in one of 24 different orientations around a circle. The researcher moved the stick counterclockwise or clockwise in subsequent trials. A participant grasped the stick and returned it to the home position. Researchers measured the position at which the child switched from a thumb up to a thumb down grasp in each direction. The peak counterclockwise switch occurred later for children with ASD. The grasp also changed less frequently for the ASD than for the control group. Our results suggest that changing a grasp was more costly than being comfortable, and that hysteresis was more prevalent in children with ASD than in the control group.

Russian Student Nurses Collaboration: A Learning Adventure

January 01, 2015 12:00 AM
Abigail Harris, Brigham Young University Health Purpose:

HiFidelity Simulation in Nursing Lab

January 01, 2015 12:00 AM
Tianne Pierce, Utah Valley University Health Since Mario and Zelda (Nintendo video games), video interactive games have been a favorite babysitter for the past two generations of children, simulation is no stranger to this population. Portions of this population became nursing students. Simulation in health care is second to none in the ‘hands on’ teaching of skills; thus, it would be the natural order of things to include interactive figures and scenario during teaching and learning in nursing. Utah Valley University’s nursing department employs the use of human simulators in the delivery of content to the students. It is no surprise that these students relate well to simulation in the classrooms. The purpose of the research study will be to compare students’ responses to learning in a teaching environment void of simulation vs. a teaching environment which uses simulation. Although simulation has long been used in aviation and the military, it has become more integrated in the health care profession over the last 20 years. These study results were congruent with national and international landmark studies where the use of simulation in nursing has been supported by the world of healthcare.

Hydration Status of Division I Collegiate Football P layers during Summer T wo-a-day Training

January 01, 2015 12:00 AM
Trey Esplin, Alathia Burnside, Sean Madill, Marquelle Funk, Sean Kiesel, Kaisey Margetts,

A Pollution Solution: Indoor Air Quality of St. George, Utah

January 01, 2015 12:00 AM
Whittni O’Brien, Dixie State University Health St. George residents are currently at risk from poor indoor air quality. The objective of this study was to provide citizens with simple solutions to purify their indoor air and avoid the side effects of pollution. The rising threats include benzene, formaldehyde and trichloroethylene. These carcinogens are directly linked to heart disease, birth defects, asthma and premature deaths in individuals. The study was conducted to see just what could be done to combat these hazards and provide the necessary information to resolve the levels of indoor air pollution to residents. A standardized questionnaire was issued to find out how educated locals were about the pollution levels and air quality within the community. Questions covered a variety of aspects including exactly what the threats were to specific methods of indoor air purification. To reduce the number of carcinogenic related health issues, participants were provided with a pamphlet including easy to follow steps to cleaner indoor air and outdoor air pollution. The objective result yielded plants to be the best solution. Aloe vera plants are not only grown locally, but are easy to propagate. These plants are known for their ability to remove formaldehyde from the air and therefore an inexpensive and readily available resource that will assist residents. Other solutions found included greenery such as moth orchids, snake plants and the ficus tree. All of these plants are easy to maintain with local climate conditions. By providing residents with the proper education and resources, the overall health of the population will rise. The conclusion of the study offers vital knowledge to the community and a progressive approach to cleaner indoor air for a healthier living space.

Understanding the Importance of Intraosseous Therapy

January 01, 2015 12:00 AM
Erika Brown and Stacie Hunsaker, Brigham Young University Health Health care professionals are often challenged with starting an intravenous (IV) line in patients who are dehydrated, have suffered trauma, or are in shock. Nurses and physicians can become frustrated by the multiple attempts and patients can lose valuable time. An alternative route to deliver the needed fluids and medications to these critical patients can be achieved by accessing the blood supply inside the bone. Intraosseous (IO) access is a safe, rapid, and an effective alternative method to deliver medications and fluids to these critical patients (Hunsaker and Hillis, 2013). I was mentored in the practice of qualitative research and interview process in a study related to difficult IV access. A qualitative research study was performed at Hospital Luis Vernaza in Guayaquil, Ecuador, to determine the complications faced in providing timely care to critical patients, and to assess their knowledge and use of IO therapy. Interviews were performed, and, because of my fluency in the Spanish language, I was the primary interviewer. These interviews were analyzed to assess the need of interventional IO therapy. Through the interviews, preliminary results demonstrated a need for an organized IV algorithm in this large hospital. The difficult IV algorithm has been developed and will be presented to the health care professionals at Hospital Luis Vernaza in the spring of 2015 on a Brigham Young University College of Nursing Global Health stay in Guayaquil, Ecuador.

The Contribution of Patient Size and Backscatter to Dose in Diagnostic Imaging

January 01, 2015 12:00 AM
Delena Hanson, Dixie State University Health Debate in diagnostic imaging over the effectiveness of shielding the patient from the incident (primary) beam compared to shielding from the scattering beam once it has hit the image receptor is ongoing. Because radiation in any amount can cause long term effects, it is the ethical obligation of those in the profession to keep the dose of radiation to the patient as low as reasonably achievable. Backscatter is radiation that goes through the patient, contributes to the diagnostic image, then still has enough energy to hit the image receptor and scatter back toward the patient. While previous studies indicate that dose to the gonads from the primary beam during chest x-ray exams are low, this additional research assesses the amount of backscatter that happens during a chest x-ray to determine at what point patient size is a factor that increases patient dose. As more technique must be used for larger patients, increased interactions will occur and therefore present a higher probability of backscatter that can add to the patient’s gonadal dose. This research quantifies whether and at what point placing a lead shield between the patient and the image receptor will reduce dose to the patient by measuring the thickness of a patient receiving chest x-ray and using a pocket dosimeter to measure the amount of radiation scattering back from the patient to compare with data from the incident beam.

The Effects of RaLight on Stress

January 01, 2015 12:00 AM
Paydon Newman and Joseph Rebman, Dixie State University Health Several studies (Shepley, 2012; Sherman-Bien, 2011; Walch, 2010) have found that sunlight has a stress-reducing effect on those who are exposed to it. An innovative new design of artificial lighting known as RaLight is proposed to reflect light with a color rendering index nearly identical to natural sunlight. This study will examine the relationship between exposure to RaLight (as a substitute for sunlight) and levels of stress. RaLight is predicted to decrease levels of stress in test subjects. In a commercial call center setting, test subjects will consist of an estimated 50 employees both male and female with ages ranging from 18 to 30 years. This research is designed as a single subject experiment (ABA). The initial control condition will be the common indoor environment which exposes patients to standard fluorescent lighting. Replacing light fixtures with RaLight will then establish both the second phase of the experiment and the independent variable. A follow up re-installment of the initial fluorescent lighting will be conducted post-RaLight phase. Throughout each phase, questionnaires regarding the overall well-being of employees will be completed.

Tom Stockham: The Father of Digital Audio Recording

January 01, 2015 12:00 AM
Sam Katz, University of Utah Fine Arts “Tom Stockham: The Father of Digital Audio Recording” is a 30-minute documentary film about former University of Utah professor Thomas Greenway Stockham, Jr., who developed the first commercially viable method of recording sound digitally with extremely high fidelity and made it possible to edit sound and music using a hard drive. Despite the limitations of 60s and 70s computing technology, as well as a number of audio professionals who opposed to the shift to digital audio, Stockham believed in his ideas, persevered, and changed the way we listen to music forever. To this day, these innovations have dramatically altered the shape of the audio recording industry in music, television, and film. Despite Dr. Stockham’s many achievements, his story remains relatively unknown outside of the audio engineering world, even here at the University of Utah and in Salt Lake City, where much of his pioneering work was done. This film brings well-deserved attention to Dr. Stockham’s story. Sadly, Dr. Stockham passed away from early-onset Alzheimer’s in 2004, therefore I portray him by interviewing those who knew him best: his wife, his four children, and his colleagues. I situate Stockham’s life and work in a larger historical context by interviewing historians, musicians, and audio industry professionals, and by mining archival footage, family photos, voice memos, and magazines for relevant material. I travel from Seattle, to Boston, to Lake Powell, to Moab, to Salt Lake City. In homage to Stockham, I use the sound and music of the film, rather than images, as the locus from which meaning and emotional power are derived. The finished film serves as an important educational and historical resource and helps to preserve an important piece of the history of the University of Utah, Salt Lake City, and the State of Utah in general.

Bifurcate: Intersections and Photography

January 01, 2015 12:00 AM
Kelly O’Neill, University of Utah Fine Arts After studying the formal qualities of photographic production and the canonic narratives of art history for over three years at the U, I am still left with a pressing question: how can this medium of artistic self-expression also be considered evidence admissible in the court of law powerful enough to elicit felony convictions? How can these mechanical images which I have been trained to see as subjective representations of artistic sentiment in their contrast, tonality, and composition simultaneously be objective records of fact in judicial and scientific discourses? If the medium of photography does exist how is this single operation able to function in such heterogeneous and contradictory discourses? Through my works and research I investigate these and other questions concerning the photographic medium’s ambiguous nature as a simultaneously aesthetic and empirical object. By combining a vast assortment of photographic forms from contemporary GIFs to historical processes such as the Cyanotype, my work reveals the multiplicity of the photographic form and its dubious ability to function within seemingly contradictory systems of knowledge production. Interrogating the processes by which photography has been used and abused, my project does not propose to reveal the truth of photography, but rather underlines the importance of seeing photography in a new and radicalized fashion. The images that I create contemplate the liminal spaces of photography in which its factual, emotional, institutional, and narrative truths commingle; fragmenting not only the solidity of the photograph but also the cultural and institutional systems it predominates. More than just a series of art works, my research seeks to bring a broader discourse on photographic meaning into a serious academic engagement which does not treat it as a simple device for conveying meaning but as a specific and complex subject in its own right.

Mainstreaming EDM

January 01, 2015 12:00 AM
Steven Saline, Dixie State University Fine Arts Electronic Dance Music or EDM has grown from its underground club origins in the late 70’s to early 80’s to become a widespread phenomenon in pop music. Through out those years, EDM has been categorized in previous terms such as Techno, and Electronica. Today EDM can be heard in music festivals through out the world and is now widely experienced in the US. Much of the genres within EDM such as Dubstep, Hardcore,Trance, etc… were created and have evolved outside the US, however; House and Techno originates here in the US. In this presentation I will discuss the history of some of the popular genres in EDM, present how each of the genres started whether they were created on their own or their evolution from previous electronic music, the history of its origins, how the music evolved in Europe, and its move to the US as we hear the music today. I will present how wide-spread EDM has become and how diverse the various forms are within the genre. I propose that if EDM continues in the direction that it is moving now, EDM will continue to grow among all other forms of music in the world for years to come.

Chemistry Laboratory Safety: Misconceptions among First-and Second-Semester General Chemistry Students.

January 01, 2015 12:00 AM
Jennifer Melvin and Wendy Schatzberg, Dixie State University Physical Sciences The general chemistry laboratory can be a dangerous place, and the possible danger is amplified by the fact that general chemistry is frequently a student’s first chemistry laboratory experience. College students come from a variety of backgrounds with only some having had chemistry in high school, and therefore many students will not know beforehand what kind of precautions to take or what kind of action to take in case of an accident in the lab. Safety information is given briefly at the beginning of the semester, but the efficacy of this is uncertain. An online survey was conducted to gauge first- and second-semester general chemistry students’ knowledge about chemistry laboratory safety and the data gathered was analyzed. This survey was conducted at two secondary schools in two different countries. Statistical analysis will be presented. Results will allow discernment of misconceptions held by students over two semesters and between countries, and conclusions can be made about the effectiveness of current laboratory safety instruction methods.

A Comparative Study on the Uptake of Nutrients and Trace Metals of Two Plant Subspecies (P.australis and P.americanus) in Utah Lake

January 01, 2015 12:00 AM
Ashley Ostraff, Utah Valley University Physical Sciences Utah Lake has a long history of being impacted by anthropogenic activities like, mining, agriculture, and surrounding industry. All of these activities have contributed to the runoff that feeds the lake, increasing the likelihood that this area contains high levels of trace metals, nitrogen, andphosphorus. Utah Lake contains two subspecies of phragmites, a wetland reed, one native (P. americanus) and one non-native (P. australis). P. australis is replacing the native species at an alarming rate. P. australis is known to have a deeper root system than the native subspecies, because of this we suspect that this allow access to a less competitive soil level giving this subspecies greater opportunity for nutrient and trace metal uptake. By comparing the root zone soils of both subspecies we hope to gather results that support this hypothesis. Examination of the roots will also showthe potential influence the soil conditions have on their growth and development. This study will compare nutrient and trace metal uptake of each subspecies to determine impact. Other factors that will be assessed include plant physiology, carbon to nitrogen ratio (C:N), bioconcentration factor (BCF) and total trace metal content in tissues of both species. Samples of P. americanus and P. australis will be collected at 9 locations in Utah Lake. Soil samples at the root zone of each plant will also be evaluated. Each sampl e will be digested in the Microwave Accelerated Reaction System and analyzed in the Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) for C, N, P, K, Ag, Al, As, Ca, Cd, Cr, Cu, Fe, Hg, K, Mn, Na, Ni, P, Pb, Ti, and Zn. Results from this study will contribute valuable data to future efforts being used to preserve the biodiversity of the plants and animals that live in and around Utah Lake. The end goal of this student project is to be submitted to peer-reviewed scientific journals for publication and to be presented at academic and scientific conferences.

Effective Dissolution of Keratin Using Ionic Liquids to Extract Radioactiv e Materials

January 01, 2015 12:00 AM
Brett Barton, Dixie State University Physical Sciences Dissolution using ionic liquids has been shown to be an efficient analytical method of dissolving keratin fibers. Using wool and hoof material from livestock, chloride-based ionic liquids were used to break down the hydrogen bonds important for keratin structure, making the extraction of constituent material much easier. Efficient methods of extraction allow for small samples to be analyzed while still providing high yields; efficient dissolution of keratin in a small sample size will be utilized to prevent any harmful effects on the animals. Ionic liquids are nondestructive solvents which allow for the safe extraction of organic substances. Denaturing keratin would help in the process of identifying any constituent radioactive materials. Efficient identification of radioactive material in livestock is crucial for maintaining health and quality of life.

Quantifying Heavy Metal Pollution in Utah Lake via Root System Accumulation in Two Subspecies of Phragmites Australis and Subsequent Determination of Anthropogenic Relevance

January 01, 2015 12:00 AM
Kevin Jackman, Utah Valley University Physical Sciences Phragmites australis is a non-native subspecies of wetland reed that was introduced to Utah Lake from Europe during early exploratory settlements and is now outcompeting native flora in the lake’s wetland ecosystem. Utah Lake is a repository for toxic heavy metals from diverse mining operations and industrial operations proximal to the water. International studies have shown Phragmites to have strong potential as a phytoremediator and a reliable biomonitoring species of polluted water and soil, yet no work in this regard has ever been performed in the state of Utah or on Utah Lake. It is by measuring the concentrations of arsenic, lead, and 12 other trace metals within the root and rhizome system of these plants that a measurement of the contamination of the lake can be made, and to determine a quantitative concentration and severity of contamination with regards to public health and safety. If these trace metals are present in excess in the lake and its soils, toxic, and harmful conditions are present and are an issue of health to the natural ecosystem of the lake, as well as the citizens recreating and working throughout the lake on a regular basis. Determination of atomic content evaluation will be performed by the Induced Coupled Plasma Optical Emission Spectrometer. Future work can then be proposed to remediate the lake, in an effort to improve the human and environmental condition of the area. This project has the interest of the Utah Department of Environmental Quality and relationships have been established for current and future cooperation. The aim of this project is to be published and presented on a peer-reviewed level in scientific journals and at conferences.

Expression of the C-terminal Domains of the Tight Junction Proteins Claudin-16, -3, and -4 to Identify Interacting Proteins in Epithelial Ovarian Carcinoma

January 01, 2015 12:00 AM
Brandon Davies, Utah Valley University Physical Sciences Epithelial ovarian carcinoma (EOC) is the sixth most common cancer in US women. The long-term cure rates are low due to the lack of reliable biomarkers for early disease detection, resulting in advanced stage diagnosis. Approximately 75%-80% of ovarian cancers are diagnosed at stages IIIV with a 10% 5-year survival rate despite aggressive treatments. Claudin proteins are being studied as possible biomarkers as they are aberrantly overexpressed in EOC tumors. The Claudin family of proteins are a main component of tight junctions in the upper region of epithelial cells that act as gateways for the exchange of water and solutes while also helping determine the cell’s polarity and function. Changes in these proteins cause changes in phenotype and function of normal epithelial cells, such as proliferation control, trans-epithelial resistance, polarity, and solute transport. Claudin-16 is often aberrantly expressed in breast and ovarian cancer, while Claudins 3- and 4 are highly overexpressed in EOC. The location of these proteins is also correlated with oncogenic transformations and cell proliferation. Determining the specific characteristics of these Claudin proteins can prove to be of incredible benefit in cancer treatments. As these proteins are targeted during these therapies, these tight junctions may then send normal signals, which in turn can regulate the cell normally. The C-termini of the Claudins, which are cytoplasmically located, contain a known PDZ-binding motif and may interact with other junction proteins or with proteins involved in interesting signaling pathways. To identify these interacting proteins, we will use the Expresso T7 Cloning System (Lucigen Corp., Middleton, WI) to purify the Claudin-16, -3, and -4 C-terminal tails to use in pull-down assays. This process includes using affinity tags to capture the Claudin tails by FPLC, which can then be analyzed by SDS-PAGE and, ultimately, the corresponding genes cloned and sequenced. This study can potentially provide crucial information in relation to how members of the Claudin family interact with other proteins that are commonly found in tissues that are misregulated in cancer. With this data treatments can be improved to increase the responsiveness of ovarian cancer patients.

Spatially Understanding Utah’s Water Resources: A Story Told through Maps

January 01, 2015 12:00 AM
Tim Beach, Utah State University Physical Sciences Successful management of the arid West requires a basic knowledge of available water resources, withdrawals, and existing management efforts. Utah, the second driest state in the country, is continuing its efforts to restore impaired water systems and teach the next generation to conserve water. Because of a fast-growing population, the diversity of Utah’s landscape, and strict regulations that govern water throughout the state, understanding the region’s current water condition can be difficult. Historically, the majority of this information has been stored in databases, represented by only numbers and statistics. In an effort to better conceptualize this data and increase the spatial understanding of Utah’s water, a set of maps have been produced. These maps were created using ESRI’s ArcMap software and Adobe Illustrator. Included are major lakes and rivers, average annual precipitation, average annual streamflow, total urban withdrawals per county, total agricultural withdrawals per county, and water management. Viewing visual representations of this information in multiple maps can aid in creating spatial inferences, and raise additional questions regarding aquatic restoration and management throughout the state. This set of maps can also be used to supplement physical science education at all school levels. Future work includes distributing these maps as posters to schools and water managers, as well making it a resource for teachers via websites and fact sheets.

Peak Density Histograms and Pathology Interpretations for High-frequence Ultrasonic Testing of Breast Cancer Surgical Specimens

January 01, 2015 12:00 AM
Robyn Omer, Utah Valley University Physical Sciences Removal of all malignant tissue during lumpectomy is critical for preventing local recurrence of the breast cancer. Failure to remove all cancer results in 20-40% of lumpectomy patients returning for additional surgery. At Utah Valley University, a method is being developed to detect cancer during the initial surgery to ensure all of the cancer has been removed. Peak density, which is the number of peaks and valleys in a specified spectral range of a high-frequency (HF) ultrasound signal, correlates to breast pathology in lumpectomy specimens. The objective of this study was to determine if the histograms of peak density versus the number of measurements provide information on corresponding breast tissue pathology. High-frequency ultrasonic data were obtained from a blind study of surgical specimens obtained from 73 lumpectomy patients at the Huntsman Cancer Institute in Salt Lake City, Utah, and South Jordan, Utah. The data were normalized to remove bias between patients. The ultrasonic signals were converted to spectra using a Fourier transform. Peak densities were calculated from the spectra by counting the number of peaks and valleys in the 20-80 MHz range. This was achieved by counting where the slopes of the spectra (their derivatives) crossed zero. A histogram was created by assigning each peak density value to a bin, and then counting the number of measurements that fell within that bin. The histogram of the peak densities produced an asymmetric Gaussian-type distribution with a range of peak density values from 0 to 27 and a mode of 5. Using threshold values determined from a pilot study for differentiating pathology with peak density, it was determined that the peak of the distribution (5-6) corresponded to normal tissue pathology, the shoulders of the distribution (0-4 and 7-10) corresponded to abnormal pathologies, and the tail of the distribution (11-27) corresponded to malignant tissue types. These correlations matched the types of specimens tested, specifically tumors, margins, and lymph nodes. The correlations also provide a measure of the success of removing malignant tissue and achieving negative margins during lumpectomy procedures. Using histograms to analyze the data not only provides a new approach for differentiating tissue pathology, but also provides a statistical measure of the success of lumpectomy procedures performed by a specific surgeon or at a specific institution.

Measuring the Effect of Breast Density on High Frequency Ultra sound using Tissue Phantoms

January 01, 2015 12:00 AM
Zachary Coffman, Utah Valley University Physical Sciences Breast density describes the proportion of connective tissue versus the fat tissue in the breast. Studies have shown that women with higher breast density are four to five times more likely to develop breast cancer than women with lower breast densities, (www.women.org/BreastCancer). Higher breast densities have proven to make current breast cancer imaging and detection more difficult. A pilot study done at the Huntsman Cancer institute showed that the ultrasonic parameter peak density, generated by high-frequency (HF) ultrasound (20-80 MHz), was sensitive to breast tissue pathology. The objective of this study was to determine the effect of breast density on ultrasound wave propagation from high frequency ultrasound using phantoms that mimic the histology of breast tissues. Phantoms were created from a mixture of distilled water, agarose powder, and 10X TBE stock solution. In order to simulate breast tissue histology and breast density, polyethylene microspheres were embedded into the phantoms in layers, totaling 4 layers per phantom. The polyethylene microsphere size (90-106 μm diameter) was kept constant within each phantom while the weight percent concentration of the microspheres varied (0.00g to 0.06g). Pitch-catch and pulse-echo measurements were acquired using 50-MHz transducers (Olympus NDT, V358-SU, 50 MHz, 0.635-cm diameter active element), a HF pulser-receiver (UTEX, UT340), and a 1-GHz digital oscilloscope (Agilent DSOX3104A). Glycerol (Genesis Scientific) was used as a coupling agent between the transducers and the phantoms. Spectra were derived from the data, giving peak density (the number of peaks and valleys in a specified spectral range), velocity, and attenuation values. The results showed that peak density did not start to show a trend until phantoms of 0.03g concentrations, where it increased from a value of 14.0 peaks (0.03g) to 18.7 peaks (0.06g). Velocity showed a statistically significant increase with greater polyethylene microsphere concentration, from 1508 m/s for 0.00g to 1536 m/s for 0.06g. No trends were observed for attenuation. These results indicate that higher levels of scattering centers in dense breast tissues will be detectable with high frequency ultrasound. This additionally shows that high frequency ultrasound may also be sensitive to greater amounts of connective tissue present in dense breast pathologies. High frequency ultrasound is sensitive to the weight percent of polyethylene microspheres. Future research is planned to further understand this relationship, including repeat studies and studies of phantoms containing chopped polyethylene fibers and triple the polyethylene microsphere concentrations to more closely simulate dense breast tissues.

Plant Fossil Locality in the Shinarump Member of the Chinle Formation (Upper Triassic) of Southwestern Utah (Washington County)

January 01, 2015 12:00 AM
Melinda Hurlbut, Dixie State University Physical Sciences A newly discovered plant fossil locality in the Chinle Formation (Upper Triassic) in Washington County broadens the distribution of known Late Triassic plant fossil localities to include southwestern Utah. Previously reported plant localities in the Chinle Formation are known from southeastern Utah, Arizona, New Mexico, and equivalent strata from the Dockum Group in Texas. The majority of the known plant fossil localities are from higher stratigraphic units of the Chinle Formation. However, the new Washington County locality is from the older, basal unit, the Shinarump Member. The plant fossils identified from the new locality include fronds of the fern Phlebopteris sp., fertile leaves of the fern Cynepteris sp., and leaves of the bennettitalean Zamites sp. Undetermined species of conifers are represented by a partial branch and a three- dimensionally preserved cone containing well preserved seeds. The diversity of species found at the Washington County plant fossil locality correlates with other known floral assemblages from the Chinle Formation, suggesting general homogeneity of Chinle Formation floras. These plant fossil assemblages support interpretations of basal Chinle Formation paleoclimates as humid and warm.

High-Frequency Ultrasound (20-80 MHz) for Analyzing Breast Cancer Surgical Margins: A 73-Patient Clinical Study

January 01, 2015 12:00 AM
Amy Fair Brother, Utah Valley University Physical Sciences Results from a 2010 pilot study indicated that multiple parameters in high-frequency (HF) ultrasound spectra (20-80 MHz) correlate to a range of tissue pathologies in surgical margins from breast conservation surgery (BCS). One of these parameters, peak density, was particularly effective at discriminating between normal, atypical, and malignant patholUtah Conference on Undergraduate Research 2015 100 ogies. Subsequently, Utah Valley University and the Huntsman Cancer Institute initiated a follow-up study to further investigate this approach. Objectives: The purpose of this study was to determine the sensitivity and specificity of HF ultrasound for differentiating malignant tissue from normal tissue in BCS surgical margins. Methods: A 73-patient blind study was conducted with conventional pathology used as the gold standard for assessing the HF ultrasound method. Specimens were delivered by the surgeon’s team immediately following resection and ultrasonically tested outside the surgical suite. The margins were approximately 3x20x20 mm, and were oriented using a small staple inserted by the surgeon in one corner and a stitch on one side. The margin was tested at 2-5 locations on the specimens using our methodology and then sent to pathology for their analysis. 498 specimens were tested from 73 patients. That corresponded to 1112 positions collected from the margins. The data was then analyzed for malignancy using peak density, and then correlated with the traditional pathology. Results: Results from the current study indicate that peak density can differentiate between malignant and nonmalignant pathologies with an accuracy of 73.8%. The correlation between pathology and peak density has a high level of statistical significance compared to random chance, with p = 0.000078 (Fisher’s Exact test). The results also provide data for improving the technique. For example, approximately 3 times more false positives were observed than false negatives, indicating the peak density threshold used for identifying malignant pathology is most likely too low and should be adjusted to a higher value. Conclusions: Results from this study showed that HF ultrasound has the potential to provide rapid, intraoperative evaluation of surgical margins, thereby decreasing the number of additional surgeries for patients and thus increasing the quality and efficacy of surgical treatment for breast cancer.

Towards The Synthesis Symmetrical and Asymetrical Bimetallic Complexes for Use in Studies of the Oxygen Reduction Reaction

January 01, 2015 12:00 AM
Eric Johnson, University of Utah Physical Sciences The ability to reduce O2 in mild conditions holds many important implications such as: use as an economical fuel cell, pharmaceutical synthesis, biomass degradation and conversion of small molecules to fuels. We are building the [M(μ-OH) (oxapyme)M(H2O)]+ molecules and symmetrical counterparts for use in O2 reduction reactions (M = Cobalt, Nickel, Iron). The precursors to the [M(μ-OH)(oxapyme)M(H2O)]+ have been synthesized as follows. 2-[5-(2-Nitro-phnyl)-[1,3,4]oxadiazol- 2-yl]-phenylamine serves as the backbone of the complex, allowing for two distinct ligands to be attached to each side. Initial yields for this synthesis averaged at 6%. To be able to complete the synthesis this needed to be significantly raised. The literature procedure was modified in various ways until new reaction conditions were found that allowed for 40% yield. Other precursors include 2,2’-(1,3,4)Oxadiazole-2,5-diyl-bis-aniline which also serves as a ligand backbone but differs in that it allows for preparation of a symmetrical ligand have been synthesized with a 51% yield. The first ligand Bis-pyridine-2-ylmethyl-amino has been produced with a 60% yield. The second ligand Methyl-pyridine-2-ylmethyl-amino has been synthesized with an approximate yield of 75%. These yields are high enough to finish the synthesis of the ligand and subsequently coordinate the metals. Upon completion, the electrochemical properties of the compounds that differ in the metal composition and the ligand (symmetrical versus asymmetrical) will be determined using studies such as cyclic voltammetry. Once the metal and ligand that are most apt at oxygen reduction is determined, more advanced studies will be undertaken to identify the reaction mechanism and intermediates.

Invasive Aquatic Species Attachment Inhibited by Surfactant Paint

January 01, 2015 12:00 AM
Kyle Marcus, Cami McKellar, Riley Pearce, Shay Beck, and Zenja Draca, Dixie State University Physical Sciences Invasive marine and freshwater species have a detrimental impact on aquatic ecosystems and are easily transferred between bodies of water as a result of unregulated settlement and attachment to commercial and recreational watercraft. This results in infestation of waterways and disruption of native organisms throughout an ecosystem. The quagga mussel (Dreissena rostriformis bugensis) is one example of such invasive species that has called for a focus on cross-contamination prevention. The goal is to use aquatic paint suitable for watercraft that prevents the settlement and/or attachment of various aquatic species such as algae, snails (Physa sp.), anemones (Aiptasia sp.), and quagga mussels. The paint is integrated with newly developed surfactants that act as an inhibitor to the adherence ability of invasive aquatic species. The surfactants are added to provide a barrier between the paint surface and the organisms creating an undesirable surface area for the organisms to attach. This barrier disrupts the specific naturally occurring chemical and physical processes that allow organisms to adhere to surfaces. The most innovative characteristic of the surfactant-based paint is its effectiveness on adherence inhibition without degradation, dissociation, or toxicity to the environment. Preventing adherence of invasive organisms to surfaces could have significant positive effects on the efficiency and cost of operations in marine environments and waterways.

Analytical Chemistry Applications for Ionic Liquids as Novel Solvents

January 01, 2015 12:00 AM
Mattie Jones, Dixie State University Physical Sciences Current techniques for isolating components of samples found at crime scenes by their unique chemical properties are lengthy and often destroy important forensic evidence. New methods aimed at forensic analysis of sensitive, minute samples are critical to the intelligence community. In particular, successful extraction of dyes from materials found at crime scenes will provide innumerable benefits for matching, identifying, and finding origins of these materials and dyes. Ionic liquids possess the necessary chemical properties to ensure efficient extractions while maintaining the forensic signatures of the original materials. Ionic liquids, which are organic salts that are room temperature, provide a versatile solvent to achieve single-component extraction-separation-identification of forensic analytes. Following extraction, successful identification by infrared, absorption, and fluorescence spectroscopy has provided evidence of preserved quality and complete separation of material and dye. This novel approach to forensic analysis is advantageous particularly when sample sizes are extremely limited, but it can be readily scaled to larger applications. Developing a simple and affordable method of achieving specific molecular interactions provides a solution for often unidentifiable evidence in crimes. Harnessing the versatility of ionic liquids in a high-yielding recovery and efficient single-pot methods will enhance forensic abilities for the intelligence community and forensic investigators.

Patterning Supported Lipid Bilayers with Magnetic Tweezers

January 01, 2015 12:00 AM
Madeline Parson, Travis Bulloch, and Tyler Argyle, Southern Utah University Physical Sciences Lipid bilayers have many important purposes in living cells. A lipid bilayer forms a barrier which separates the fluid inside the cell from the fluid surrounding the cell. The arrangement of components within cell membranes can be extremely important, particularly in cell communications. For example, when our immune system attacks certain pathogens, it recognizes them by specific proteins in the inner and outer regions. This can be thought of as forming a “bull’s-eye” shape. The ability to generate such patterns in bilayers might see applications in many areas of biology. Our goal is to take an initially un-patterned supported lipid bilayer (model cell membrane) and use magnetic tweezers as a delivery system to generate patterns. We hope to show pattern formation using fluorescent-labeled lipids within our bilayer. In the past, we have used streptavidin and biotinylated lipids with Oregon Green. Currently, we are pursuing a fluorescein/anti-fluorescein system that has been yielding much more promising results. We are currently using a fluorescent microscope to confirm that patterns are forming within the bilayer.

Correlation of Force and Peak Density during High-Frequency Ultrasound T esting: A Reliability Study

January 01, 2015 12:00 AM
Benjamin Finch, Utah Valley University Physical Sciences The Breast Cancer Research Laboratory at Utah Valley University has been using high-frequency ultrasound to test the pathology of surgical margins from breast cancer conservation surgery. Their studies have shown that high-frequency ultrasound may be sensitive to a range of breast pathologies. The ultrasonic parameter that has been shown to be the most sensitive to pathology is the number of peaks (peak density) in the frequency spectra from the captured waveforms. During testing, the ultrasonic transducers apply an amount of force to the tissues that can vary depending on the researcher. The central question of this study was to determine the effect that the applied force has on the final peak density reading, and therefore the reliability of the results. In order to determine the correlation of force and peak density, an experiment was designed to measure the force applied to tissue by the ultrasonic transducer during testing and to simultaneously measure the applied force while collecting ultrasonic waveforms. An Arduino Uno R3 instrument was obtained as well as an Interlink Electronics FSR 406 force sensor pad. The Arduino was programmed to read the voltage from the FSR sensor and use that information to provide force (N) and pressure (N/cm2) data from the stage. Peak density readings from bovine mammary tissue (very similar to human breast tissue) were acquired using varying amounts of force. The results obtained exhibited significant changes in peak density with applied force. The results showed that if the applied force is under 1.18N, the peak density will fluctuate significantly and will therefore give inconsistent results. However, if the force applied is greater than 1.18N, the peak densities will maintain a relatively consistent form. In conclusion, if the force applied during testing is above 1.18N, the waveforms captured from high-frequency ultrasound testing on breast cancer tissues will provide consistent and reliable results, thus improving the quality of the data and accuracy of diagnosis.

Hip Joint Center Differences between Dual Fluoroscopy, Functional Hip and Coda—Establishing a Reference Standard

January 01, 2015 12:00 AM
Michael Kutschke and Niccolo Fiorentino University of Utah Measurements of joint angles, moments, and forces can be sensitive to positional changes in the center of a joint. Due to its deep location, the hip joint center (HJC) can be difficult to determine. Regression equations and functional methods use skin markers and are commonly used to measure the HJC, yet introduce sources of error such as bony landmark identification, soft tissue artifact, and system resolution. Additionally, the accuracy of said methods cannot be established in-vivo without a reference standard. The purpose of this study was to implement a dual fluoroscopy (DF) and model-based tracking technique to quantify the subject-specific HJC position in-vivo. This reference standard (DF-HJC) was then compared to the HJC defined by regression equations (CODA) and a functional method (FHJC) using skin markers. Five subjects with normal hip anatomy provided informed consent to participate in this IRB approved study. A gait marker set was applied to the subject’s skin. The subject performed various activities involving the inferior limb while a 10-camera Vicon system measured the position of the skin markers. From these data, the CODA and FHJCs were identified. Simultaneously, the hip was visualized using a DF system, and the DF-HJC was identified using model-based tracking. The DF-HJC was then transformed to the Vicon coordinate system for comparison with the CODA and FHJCs. The average Euclidean distance (and standard deviation) for the five subjects from the DF-HJC was 2.0 (0.6) cm for CODA and 1.3 (0.4) cm for the FHJC. To our knowledge this is the first study to use DF and model-based tracking to measure the in-vivo position of the HJC. This technique affords greater accuracy in determining subject-specific bone geometry and visualization of deep hip anatomy, thus may be considered a reference standard for identifying the HJC.

Monitoring Angiogenesis in Early Chick Dev elopment Using High-frequency Ultrasound: Method Development and Preliminary Results

January 01, 2015 12:00 AM
Cameran Mecham, Utah Valley University Physical Sciences Introduction:

High-Frequency Ultrasonic Measurement of Angiogenesis in Mice with Breast Tumors and Ligated Femoral Arteries

January 01, 2015 12:00 AM
Michaelle Cadet, Utah Valley University Physical Sciences Breast cancer is the most common cancer among women in the United States. Tumor angiogenesis and its inhibition is an important aspect of oncology and the treatment of cancer. High-frequency ultrasound (10-100 MHz) is particularly sensitive to small vascular structures that are close in size to the ultrasound wavelength (15-150 _m). The ability to rapidly determine the degree of vascularization in small animals in vivo would provide a useful characterization tool for breast cancer studies. The objective of this study was to determine if direct ultrasonic measurements in the 10-100 MHz range could be used as a vascularization assay for breast tumors and other tissues. To accomplish this, six mice from the Huntsman Cancer Institute (Salt Lake City, Utah) with grafted breast cancer tumors (three control and three treated with an angiogenesis inhibitor called Avastin) were tested in vivo using through-transmission ultrasonic measurements. A second study was also performed at the Ludwig Boltzmann Institute for Experimental and Clinical Traumatology (Vienna, Austria), where the femoral artery in one hind leg of each of sixteen mice was ligated and tested over the time period of eight days. Eight of the ligated limbs were treated with vascular endothelial growth factor (VEGF) while the remaining eight ligated limbs were allowed to grow ischemic. The unligated limbs were controls. Results from the Huntsman Cancer Institute study indicated that breast tumors in Avastin-treated mice showed higher ultrasound velocities than control tumors. This can be ascribed to the vasculature in the nontreated tumors creating greater wave scattering in the tissue, thus decreasing the velocity. Results from the Boltzmann Institute study indicated that in mice with ligated femoral arteries, ultrasonic signals from ischemic limbs displayed a decrease in wave velocity over the test period as compared to the VEGF-treated limbs. However, both the ischemic and VEGF-treated limbs showed decreases in ultrasonic attenuation during the entire test period. Results from Avastin-treated mouse tumors and mouse limbs with ligated femoral arteries revealed that high-frequency ultrasound holds potential for measuring angiogenesis in vivo.

Peak Density and Attenuation as Complementary Parameters for Differentiating Breast Tissue Pathology

January 01, 2015 12:00 AM
Nicole Cowan, Utah Valley University Physical Sciences Breast cancer is the second most prevalent cancer among women, affecting one out of eight women in their lifetime. The ability to differentiate between malignant and normal tissues during breast cancer surgery would enable the surgeon to remove all of the cancer from the affected region in the breast, thereby reducing the risk of recurrence and the need for subsequent surgeries. A pilot study conducted at the Huntsman Cancer Institute showed that high-frequency ultrasound (20-80 MHz), and in particular the ultrasonic parameter peak density, was sensitive to breast tissue pathology. The objective of this study was to determine the effect of tissue microstructure on peak density using phantoms that mimic the histology of breast tissue. Phantoms were created from a mixture of distilled water, Knox gelatin, and Metamucil fiber. In order to simulate breast tissue histology and terminal ductal lobular units, polyethylene microspheres were embedded into the phantoms in layers, totaling 4 layers per phantom. The volume percent of polyethylene microspheres was kept constant in each phantom while varying microsphere sizes (58-925 μm diameter). Pitch-catch and pulse-echo measurements were acquired using 50-MHz transducers (Olympus NDT, V358-SU, 50 MHz, 0.635-cm diameter active element), a HF pulsar-receiver (UTEX, UT340), and a 1-GHz digital oscilloscope (Agilent DSOX3104A). Glycerol (Genesis Scientific) was used as a coupling agent between the transducers and the phantoms. Spectra were derived from the data, giving peak density (the number of peaks and valleys in a specified spectral range) and attenuation values. In a previous study, histology- mimicking phantoms were fabricated where the weight percent of polyethylene microspheres was kept constant, but the microsphere diameter was varied. The former study showed a clear trend of higher peak density values for smaller diameters, but no trend for attenuation. In contrast, the phantoms from this study showed no trend in peak density, but a clear trend of higher attenuation values for larger microspheres. The results show that specific changes in tissue microstructure affect the parameters of peak density and attenuation differently. Changes in the number of scatterers and in their size, as in the previous study, affected peak density most significantly. In contrast, changes solely in the size of the scatterers, but not in their number, affected attenuation most significantly. These results are consistent with attenuation results for lobular carcinoma in the pilot study. These results show that peak density and attenuation are complementary parameters, and could be used together to characterize a variety of tissue pathologies

Species List of Insects in Capitol Reef National P ark

January 01, 2015 12:00 AM
Robert Erickson, Utah Valley University Life Sciences Although the insect fauna of the Colorado Plateau region are somewhat well known, our specific understanding of the arthropod biodiversity in Capitol Reef National Park has been sparse. Objective: From the multiple insect surveys conducted in Capitol Reef National Park we intend to catalog the arthropod biodiversity into a species list. Methods: In addition to the previous collecting trips, we carried out collection efforts this past summer (2014). We used the Utah Valley University Capitol Reef Field Station as our home base. General insect collecting efforts were conducted around the field station and the nearby Pleasant Creek, near the public campgrounds, along trails, and in several other locations in the southern portion of the park. Additionally, we performed night collecting with a mercury vapor lamp trap on the nights we were in the park and utilized stationary malaise and aquatic larvae traps. The collected specimens were curated using methods of pinning, spreading, labeling, identifying, photographing, and organizing the insects. Results: The collections contributed to an increased understanding of the parks insect diversity and resulted in a curated natural history museum collection. A species list will be made available for the records of Capitol Reef National Park. More than 3000 specimens have been collected within the park. Furthermore, a booklet of the common insects for the park is in the process of being created in order to serve as an educational tool for visitors to the park and field station.

The Role of PAS Kinase and Cbf1 in Glucose Metabolism

January 01, 2015 12:00 AM
Jenny Pattison, Brigham Young University Life Sciences Sensory protein kinases are essential in the phosphorylation of many protein substrates, allowing them to control several metabolic functions and maintain cellular homeostasis. PAS kinase is a sensory protein kinase that is highly conserved and plays a crucial role in glucose homeostasis, however little is known about the molecular mechanisms behind its function. UGP1 is the only well-characterized substrate of PAS kinase, and its phosphorylation diverts glucose away from storage and towards cell wall biosynthesis. We have recently discovered another key substrate of PAS kinase that affects glucose metabolism in the cell, Centromere binding factor 1 (Cbf1). Cbf1 regulates genes involved in respiration, and we have shown that the phosphorylation of Cbf1 by PAS kinase inhibits Cbf1, decreasing respiration in yeast cells. We hypothesize that this is due to a decrease in mitochondrial mass in cbf1 deficient yeast. Further characterizing the effects of PAS kinase on Cbf1 will give further insight into how cells regulate their central metabolic functions, including respiration.

Evolution and Molecular Phylogenetics of Baetidae (Ephemeroptera)

January 01, 2015 12:00 AM
Chase Barker, Utah Valley University Life Sciences Central Research Question:

Trends in Birds Communities in Red Butte Canyon ov er the Past 22 Years

January 01, 2015 12:00 AM
Kylynn Parker, University of Utah Life Sciences Red Butte Canyon (RBC) is a Research Natural Area administered by the US Forest Service in Salt Lake City, Utah. RBC is an undisturbed area and a haven for all types of birds. Most of the avian species found in this area are migratory, and either pass through or breed in the area. The overall aim of this project is to determine if there have been any notable changes in populations of species in the area over the past 22 years. The research question that is covered in this summary are the following: has the density and relative abundance of the top five most commonly detected avian species in Red Butte Canyon notably changed through time in Transect 1? Data was collected by Mark Leppert, PhD and Sherwood Casjens, PhD of the University of Utah. They recorded the number and species of birds that were both seen and heard in 10 different transects within RBC over the past 22 years (1991-2013) and 457 survey days. In 2013 and 2014, I compiled and entered all of the data into a database with the guidance of the researchers. For analysis, I focused on the five most commonly detected species in Transect 1. These species are Black-Capped Chickadee (Poecile atricapilla), Warbling Vireo (Vireo gilvus), Yellow Warbler (Dendroica petechia), American Robin (Turdus migratorius), and Lazuli Bunting (Passerina amoena). Detection trends were found by graphing the number of individual birds seen or heard in Transect 1 over the days since surveys began in 1991 and statistical evidence was found showing significant changes in species population size of these five most commonly detected species, especially in the case of the American Robin which exhibits a decline in detections in recent years.

Phylogeography of Desert Iguanas

January 01, 2015 12:00 AM
Michael Packer, Utah Valley University Life Sciences Dipsosaurus dorsalis is a desert dwelling iguana species geographically distributed throughout the south-western United States, northern Mexico, and the Baja Peninsula. Throughout the Baja Peninsula, multiple species of herpetofauna exhibit a distinct north-south division, both morphologically and genetically, with no presence of any physical barriers. The goal of this study was to examine how the genetic structure of D. dorsalis has been influenced by past geological events, and whether this species exhibits a similar north-south division on the Baja peninsula. Additionally, this study aimed to see if the current taxonomy of Dipsosaurus is reflective of the evolutionary relationships across its entire geographic range. 100 tissue samples of D. dorsalis were collected across the species geographic range. DNA extraction from collected tissue samples and sequencing of nuclear loci MLH3 (~900bp), NT3 (489bp), as well as mitochondrial loci ND4 (~900bp) were performed to examine the distribution of genetic variation in D. dorsalis. The collected data was then used to construct phylogenetic trees for each locus, comparing individuals of Dipsosaurus to the geologic history of its geographic distribution. Although shallow, a maximum likelihood tree of the ND4 mitochondrial gene shows the phylogeographic separation of three distinct clades. The results do not support the designation of Dipsosaurus catalinensis as currently defined.

Gone Again: A story of Evolution, Mandibular Tusks, and Burrowing Mayflie

January 01, 2015 12:00 AM
Stephanie Bartlett, Utah Valley University Life Sciences Our project investigates the phylogenetic relationships of the superfamily Ephemeroidea + Behningiidae. Found in waters worldwide, burrowing families are unique in that they have mandibular tusks that allow them to tunnel in the silt or gravel of riverbeds. Surprisingly, even without the mandibular tusks necessary for tunnel construction, the Behningiidae family is still found within these burrows as nymphs. Because the Behningiidae don’t have tusks, morphological research has lead to a phylogenetic classification of this family that our genomic investigation ultimately disputes. To begin this investigation, mayfly specimens were collected worldwide and prepared for DNA extraction. For each specimen genes were amplified via polymerase chain reaction and visualized on an agarose gel, before being sequenced and analyzed. The specific genes targeted for this analysis include; 12s mitochondrial rDNA, 16s mitochondrial rDNA, 18s nuclear rDNA, 28s nuclear rDNA, H3 nuclear protein coding, and CO1 mitochondrial protein coding. Datasets were supplemented with sequences acquired from Genbank. The ingroup consisted of approximately 30 samples. Phylogenetic relationships were estimated using Maximum Parsimony, Maximum Likelihood, and Baysian methods. We constructed phylogenetic relationships of burrowing mayflies using molecular DNA data analysis, when compared to morphological analysis we identified some important classification differences. As a result of our findings, we propose an alternative explanation for the evolution of mandibular tusks in burrowing mayflies (Ephemeroptera). The data support that burrowing mayflies first evolved tusks. Within the family Behningiidae, tusks were lost, while the burrowing lifestyle (i.e., living in a burrow to filter feed) was retained. This study represents the largest analysis to date for these insects and strongly supports the evolutionary trend of a gain and a loss of mandibular tusks during their evolution.

To Accept or Not Accept: A study of Evolution and Worldview Reconciliation in an Introductory Biology Course

January 01, 2015 12:00 AM
Danny Ferguson, Utah Valley University Life Sciences This research examined the acceptance of evolution for introductory Biology students and the reasons why they don’t accept evolution, accept evolution, and why they change their minds over the semester. Previous studies examined student’s observations and knowledge of the evolutionary theory and found that the degree of conflict students perceived between religion and science was negatively correlated with their knowledge of evolution. Objective: The objective of this research was to better understand the student’s views of evolution and its integration into their worldly and religious views. Methods: We will conduct interviews with general Biology students in order to better understand the reasons why they don’t accept evolution, accept evolution, and why they change their minds over the semester. The interview questions are designed to investigate, in more detail than the previous surveys, the opinions of evolution and how they change over the course of the semester. The recordings will be transcribed and quantified by binning answers into categories. Given high % of students are LDS, we will ask a few additional questions to this portion of the population. Results: We found that as students knowledge of evolution increased, their conflict with religion decreased. The data demonstrate that there are three main reasons for this trend: 1) Evidence convinces the students to accept evolution; 2) Particularly for LDS students, knowledge of the official position of the Church, enables them to allow evolution to be a correct process in nature; and 3) the instructor as a role model (believer yet accepts evolution) can have a large influence.

Comparison of Macroinvertebrate Assemblages of Two Perennial Streams in Capitol Reef National Park

January 01, 2015 12:00 AM
Jake Loveless, Utah Valley University Life Sciences Macroinvertebrate assemblage composition was assessed in two perennial streams, Pleasant Creek, and Sulphur Creek in Capitol Reef National Park, Utah, during the summer of 2014. Individuals collected were identified to genus. This information was used to compare assemblage composition, nutrient availability, and water quality between the two streams. Five collection trips were made (May 27, June 10,17, July 1,15). Sampling was conducted randomly using mesh kick nets with four samples being collected per site, per trip. Heavy rains caused flash flooding on July 15 prohibiting sampling, so a total of sixteen samples per site were taken. Samples were stored in 90% isopropyl alcohol until they could besorted and identified using a dissecting microscope. Water quality estimates were determined by taking the weighted average of the tolerance values, and the final classification was made using the family-level biotic index. Pleasant Creek showed the highest number of taxa present, fourteen, compared to six in Sulphur Creek. Both streams followed the predictions of the River Continuum Concept consisting of collector-dominated functional feeding groups, with Pleasant Creek showing a higher percentage of predators 35.7% to 16.6%. Tolerance values of collected taxa were used to estimate organic pollution indicating good water quality in Pleasant Creek, and fairly poor water quality in Sulphur Creek. The differences in the macroinvertebrate assemblage composition in this study were likely multi-causal. Stream size is a major factor influencing the structure of macroinvertebrate assemblages; in general, as stream size increases, more taxa are added. Pleasant Creek is a much larger stream with a well-established channel, while Sulphur Creek is shallow with depths never exceeding fifteen centimeters. The shallow channel of Sulphur Creek also made it prone to frequent flooding. Isolated floods have little impact on macroinvertebrate communities due to availability of aerial adults nearby to recolonize rapidly, however, frequent flooding may have long-term effects through extirpation of taxa with high mortality. The difference in water quality was the most surprising finding in this study. The fairly poor water quality of Sulphur Creek may also be a factor in the lack of genera found there. Organic pollution effects primary productivity in streams, and while primary productivity was not measured in this study, visual observations found very little algae or aquatic vegetation at Sulphur Creek.

Yeast PAS Kinase as a Model for Cellular Metabolic Control

January 01, 2015 12:00 AM
Katherine Harris, Brady Evans and Thomas Andros, Brigham Young University Life Sciences Metabolic diseases, such as obesity and diabetes, have become endemic and the need for better treatments is rising. Mutations in PAS kinase, a recently discovered sensory kinase, have been shown to cause Maturity Onset Diabetes of the Young (MODY) in humans (Semplici et al., 2011). In addition, PAS kinase deficient mice display many phenotypes related to diabetes including resistance to weight gain, insulin insensitivity and triglyceride accumulation in response to a high-fat diet (Hao et al., 2007). Despite its importance in metabolism, little is known about the regulation of PAS kinase. PAS kinase consists of a sensory PAS domain that binds to and inhibits a protein kinase domain (Amezcua et al, 2002). We are currently engaged in several yeast genetic screens which will allow identification of regions in the full length PAS kinase that are essential for activation or for binding its substrates. The first screen is based on the finding that PAS kinase overexpression rescues a temperature-sensitive mutation in Tor2, the tor2(ts). We have isolated both point mutations and truncations in PAS kinase which alleviate the tor2(ts), suggesting they are hyperactive alleles. These mutations identify novel regions involved in PAS kinase regulation. Our second screen uses the yeast 2-hybrid to select for both point mutations and truncations that increase the ability of PAS kinase to bind its substrates. These mutations will help identify key regions of PAS kinase utilized in substrate recognition. Finally, we have identified regions of PAS kinase that are well-conserved throughout evolution and will compare these regions with the regions affected by our mutations. This study will be the first reported mutagenic analysis of PAS kinase. Analysis of these specific genetic regions will help elucidate the molecular mechanisms involved in the regulation and function of PAS kinase, a key player in the development of metabolic disease.

c-Fos and β-cell Proliferation

January 01, 2015 12:00 AM
Jason Ray, Benjamin Bitner, Kyle Kener, and Brent Jackson, Brigham Young University Life Sciences Type 1 and Type 2 diabetes are increasing at an alarming rate. Both types of diabetes result in decreased functional β-cell mass, which is defined as the number of β-cells multiplied by their Glucose Stimulated Insulin Secretion rate. Decreased functional β-cell mass inhibits regulation of blood glucose levels. β-cells have an extremely low proliferation rate after adolescence, meaning the functional β-cell mass cannot naturally recover. Increasing functional β-cell mass could provide a cure for diabetes, either through pancreatic islet transplants or through enhancement of the endogenous β-cell population. Nkx6.1 has been shown to increase β-cell proliferation by inducing the nuclear receptors Nr4a.1 and Nr4a.3. We have shown that Nkx6.1 increases expression of the gene c-Fos, and that c-Fos induces expression of Nr4a1 and Nr4a3. Furthermore, we have shown that c-Fos is sufficient to induce proliferation of β-cells in the INS-1 832/3 cell line and in primary rat islets. Finally, using lenti-sh-c-Fos to create a stable c-Fos deficient stable cell line, we have demonstrated that Nkx6.1 mediated proliferation is modified by the lack of c-Fos. We propose a model by which c-Fos is a critical link between Nkx6.1 and Nr4a mediated β-cell proliferation.

The Effects of Umbellularia Californica Essential Oil on the Cutaneous Vasculature of Frogs

January 01, 2015 12:00 AM
Stephan Maman and Holden Wagstaff, Southern Utah University Life Sciences Most plant species produce chemical compounds called secondary metabolites that enhance fitness in a variety of ways. Many of these compounds are also physiologically active in vertebrates and have widespread medicinal uses. The most ubiquitous secondary metabolites are the terpenoids, many of which cause vasodilation of the aorta and mesenteric arteries. In this study, we examined the vasoactive effects of the essential oil of Umbellularia californica, which contains the terpenoid umbellulone. Oil obtained via steam distillation using aerial portions of U. californica was applied directly to cutaneous arterioles of frogs. Arteriole diameter was monitored both before and after oil application by video microscopy. Within seconds of application, the oil caused significant vasoconstriction that persisted until the oil was washed off. Our control, medical grade sesame oil, caused no observable effects when applied using the same protocols. These results are opposite to the vasodilatory effects of terpenoids on aortic rings and mesenteric arteries. This suggests that the vasoactive effects of umbellulone are different from other terpenoids, that the vasoactive effects of terpenoids differ depending on blood vessel type, or that application of the complete essential oil affects vasculature differently than application of the isolated terpenoid.

Changes in Urine pH: A Time Series Study

January 01, 2015 12:00 AM
Michael Hinckley and Cayden Westwood, Dixie State University Life Sciences Clinical laboratory standards state that urine samples should be tested within 2 hours of collection. If testing is delayed beyond that time frame the sample needs to be refrigerated to inhibit urea conversion to ammonia and an increase in urine pH. Here medical lab science students investigated whether urine samples left at room temperature for 48 hours resulted in significant increases in urine pH with concomitant microbial growth. Five clean-catch urine specimens were obtained and promptly tested for pH levels using a sterile pH meter (EcoTestr, Oakton Instruments). Samples were then aliquoted into capped and uncapped containers that were left at room temperature. Samples were tested at 0, 8, 20, 24, 32 and 48 hours. The pH values from the uncapped and capped samples from these time periods were analyzed using a paired two tailed t-test. Results indicated one sample out of five was significant (P = .05). Initial samples were gram stained, then read to determine the presence of bacteria. Specimens were cultured on 5% Sheep Blood and MacConkey agar plates. Plates were read for bacterial growth at 24 hours incubation and growth was identified on two samples. At 48 hours, both uncapped and capped urine cultures were plated again and three samples demonstrated bacterial growth the following day. Microbial testing identified normal urogenital flora and pathogenic bacteria. Urine with pathogenic bacteria demonstrated significant increases in pH, while additional cultures with bacterial growth also increased but not with significance. Future studies could employ a larger sample size from both healthy and diseased individuals. Furthermore, identification of microbes that will thrive in acidic and alkaline pH would be of interest.

Effects of Resveratrol on PMCA in Breast Cancer Cells

January 01, 2015 12:00 AM
Joshua Peterson, Brigham Young University Life Sciences Cancer kills millions of people every year. Cancer occurs when cells proliferate at an excessive rate and do not die as regularly functioning cells do. In cancer cells, the mechanism that initiates apoptosis (cell death) is inhibited. These cells eventually multiply to the point where they interfere with physiological function and cause death. Therefore, one of the aims of cancer research is to find treatments that initiate apoptosis in cancer cells. Many current chemotherapeutic (anti- cancer) treatments are toxic to all mitotic cells, rather than to cancer cells alone. Studies have shown that resveratrol, which is found in grapes, peanuts, and berries, facilitates apoptosis in cancer cells without causing apoptosis in regular cells. The apoptotic activity of resveratrol in tumor cells is dependent on a large, sustained increase in cytoplasmic calcium ion concentration. In properly functioning cells, plasma membrane Ca2+- ATPase (PMCA) pumps excess calcium from the cytosol to the extracellular space. PMCA prevents toxically high levels of calcium and maintains cytoplasmic calcium homeostasis. Using live cell microscopy to monitor intracellular calcium ion concentration, we explore the direct and indirect effects of resveratrol on PMCA activity in MDA-MB-231 (a breast cancer cell line).