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Physical Sciences

Correlation of Force and Peak Density during High-Frequency Ultrasound T esting: A Reliability Study

January 01, 2015 12:00 AM
Benjamin Finch, Utah Valley University Physical Sciences The Breast Cancer Research Laboratory at Utah Valley University has been using high-frequency ultrasound to test the pathology of surgical margins from breast cancer conservation surgery. Their studies have shown that high-frequency ultrasound may be sensitive to a range of breast pathologies. The ultrasonic parameter that has been shown to be the most sensitive to pathology is the number of peaks (peak density) in the frequency spectra from the captured waveforms. During testing, the ultrasonic transducers apply an amount of force to the tissues that can vary depending on the researcher. The central question of this study was to determine the effect that the applied force has on the final peak density reading, and therefore the reliability of the results. In order to determine the correlation of force and peak density, an experiment was designed to measure the force applied to tissue by the ultrasonic transducer during testing and to simultaneously measure the applied force while collecting ultrasonic waveforms. An Arduino Uno R3 instrument was obtained as well as an Interlink Electronics FSR 406 force sensor pad. The Arduino was programmed to read the voltage from the FSR sensor and use that information to provide force (N) and pressure (N/cm2) data from the stage. Peak density readings from bovine mammary tissue (very similar to human breast tissue) were acquired using varying amounts of force. The results obtained exhibited significant changes in peak density with applied force. The results showed that if the applied force is under 1.18N, the peak density will fluctuate significantly and will therefore give inconsistent results. However, if the force applied is greater than 1.18N, the peak densities will maintain a relatively consistent form. In conclusion, if the force applied during testing is above 1.18N, the waveforms captured from high-frequency ultrasound testing on breast cancer tissues will provide consistent and reliable results, thus improving the quality of the data and accuracy of diagnosis.

High-Frequency Ultrasound (20-80 MHz) for Analyzing Breast Cancer Surgical Margins: A 73-Patient Clinical Study

January 01, 2015 12:00 AM
Amy Fair Brother, Utah Valley University Physical Sciences Results from a 2010 pilot study indicated that multiple parameters in high-frequency (HF) ultrasound spectra (20-80 MHz) correlate to a range of tissue pathologies in surgical margins from breast conservation surgery (BCS). One of these parameters, peak density, was particularly effective at discriminating between normal, atypical, and malignant patholUtah Conference on Undergraduate Research 2015 100 ogies. Subsequently, Utah Valley University and the Huntsman Cancer Institute initiated a follow-up study to further investigate this approach. Objectives: The purpose of this study was to determine the sensitivity and specificity of HF ultrasound for differentiating malignant tissue from normal tissue in BCS surgical margins. Methods: A 73-patient blind study was conducted with conventional pathology used as the gold standard for assessing the HF ultrasound method. Specimens were delivered by the surgeon’s team immediately following resection and ultrasonically tested outside the surgical suite. The margins were approximately 3x20x20 mm, and were oriented using a small staple inserted by the surgeon in one corner and a stitch on one side. The margin was tested at 2-5 locations on the specimens using our methodology and then sent to pathology for their analysis. 498 specimens were tested from 73 patients. That corresponded to 1112 positions collected from the margins. The data was then analyzed for malignancy using peak density, and then correlated with the traditional pathology. Results: Results from the current study indicate that peak density can differentiate between malignant and nonmalignant pathologies with an accuracy of 73.8%. The correlation between pathology and peak density has a high level of statistical significance compared to random chance, with p = 0.000078 (Fisher’s Exact test). The results also provide data for improving the technique. For example, approximately 3 times more false positives were observed than false negatives, indicating the peak density threshold used for identifying malignant pathology is most likely too low and should be adjusted to a higher value. Conclusions: Results from this study showed that HF ultrasound has the potential to provide rapid, intraoperative evaluation of surgical margins, thereby decreasing the number of additional surgeries for patients and thus increasing the quality and efficacy of surgical treatment for breast cancer.

Plant Fossil Locality in the Shinarump Member of the Chinle Formation (Upper Triassic) of Southwestern Utah (Washington County)

January 01, 2015 12:00 AM
Melinda Hurlbut, Dixie State University Physical Sciences A newly discovered plant fossil locality in the Chinle Formation (Upper Triassic) in Washington County broadens the distribution of known Late Triassic plant fossil localities to include southwestern Utah. Previously reported plant localities in the Chinle Formation are known from southeastern Utah, Arizona, New Mexico, and equivalent strata from the Dockum Group in Texas. The majority of the known plant fossil localities are from higher stratigraphic units of the Chinle Formation. However, the new Washington County locality is from the older, basal unit, the Shinarump Member. The plant fossils identified from the new locality include fronds of the fern Phlebopteris sp., fertile leaves of the fern Cynepteris sp., and leaves of the bennettitalean Zamites sp. Undetermined species of conifers are represented by a partial branch and a three- dimensionally preserved cone containing well preserved seeds. The diversity of species found at the Washington County plant fossil locality correlates with other known floral assemblages from the Chinle Formation, suggesting general homogeneity of Chinle Formation floras. These plant fossil assemblages support interpretations of basal Chinle Formation paleoclimates as humid and warm.

Spatially Understanding Utah’s Water Resources: A Story Told through Maps

January 01, 2015 12:00 AM
Tim Beach, Utah State University Physical Sciences Successful management of the arid West requires a basic knowledge of available water resources, withdrawals, and existing management efforts. Utah, the second driest state in the country, is continuing its efforts to restore impaired water systems and teach the next generation to conserve water. Because of a fast-growing population, the diversity of Utah’s landscape, and strict regulations that govern water throughout the state, understanding the region’s current water condition can be difficult. Historically, the majority of this information has been stored in databases, represented by only numbers and statistics. In an effort to better conceptualize this data and increase the spatial understanding of Utah’s water, a set of maps have been produced. These maps were created using ESRI’s ArcMap software and Adobe Illustrator. Included are major lakes and rivers, average annual precipitation, average annual streamflow, total urban withdrawals per county, total agricultural withdrawals per county, and water management. Viewing visual representations of this information in multiple maps can aid in creating spatial inferences, and raise additional questions regarding aquatic restoration and management throughout the state. This set of maps can also be used to supplement physical science education at all school levels. Future work includes distributing these maps as posters to schools and water managers, as well making it a resource for teachers via websites and fact sheets.

Chemistry Laboratory Safety: Misconceptions among First-and Second-Semester General Chemistry Students.

January 01, 2015 12:00 AM
Jennifer Melvin and Wendy Schatzberg, Dixie State University Physical Sciences The general chemistry laboratory can be a dangerous place, and the possible danger is amplified by the fact that general chemistry is frequently a student’s first chemistry laboratory experience. College students come from a variety of backgrounds with only some having had chemistry in high school, and therefore many students will not know beforehand what kind of precautions to take or what kind of action to take in case of an accident in the lab. Safety information is given briefly at the beginning of the semester, but the efficacy of this is uncertain. An online survey was conducted to gauge first- and second-semester general chemistry students’ knowledge about chemistry laboratory safety and the data gathered was analyzed. This survey was conducted at two secondary schools in two different countries. Statistical analysis will be presented. Results will allow discernment of misconceptions held by students over two semesters and between countries, and conclusions can be made about the effectiveness of current laboratory safety instruction methods.

Invasive Aquatic Species Attachment Inhibited by Surfactant Paint

January 01, 2015 12:00 AM
Kyle Marcus, Cami McKellar, Riley Pearce, Shay Beck, and Zenja Draca, Dixie State University Physical Sciences Invasive marine and freshwater species have a detrimental impact on aquatic ecosystems and are easily transferred between bodies of water as a result of unregulated settlement and attachment to commercial and recreational watercraft. This results in infestation of waterways and disruption of native organisms throughout an ecosystem. The quagga mussel (Dreissena rostriformis bugensis) is one example of such invasive species that has called for a focus on cross-contamination prevention. The goal is to use aquatic paint suitable for watercraft that prevents the settlement and/or attachment of various aquatic species such as algae, snails (Physa sp.), anemones (Aiptasia sp.), and quagga mussels. The paint is integrated with newly developed surfactants that act as an inhibitor to the adherence ability of invasive aquatic species. The surfactants are added to provide a barrier between the paint surface and the organisms creating an undesirable surface area for the organisms to attach. This barrier disrupts the specific naturally occurring chemical and physical processes that allow organisms to adhere to surfaces. The most innovative characteristic of the surfactant-based paint is its effectiveness on adherence inhibition without degradation, dissociation, or toxicity to the environment. Preventing adherence of invasive organisms to surfaces could have significant positive effects on the efficiency and cost of operations in marine environments and waterways.

Mobility and Distribution of Trace Element Pollution in Sediments of the Utah Lake Outlet

January 01, 2015 12:00 AM
Henintsoa Rakotoarisaona, Utah Valley University Physical Sciences The Jordan River is the only outlet of Utah Lake. Historically, this area has been impacted by urbanization, long term mining operations, industrial and agricultural activities resulting in potentially high levels of trace metal pollutants at the headwaters of the Jordan River. Since trace metals are known to be toxic at elevated levels, it is important to evaluate their concentration, distribution and mobility in this sensitive area in order to determine risk to wildlife, humans and downstream users of the Jordan River. Three core samples from 0 cm to 95 cm in depth were collected at the east (industrialized area), west (newly developed area) and north (an island barrier) sides of the outlet of Utah Lake. Each sample was digested in triplicates in the Microwave Accelerated Reaction System (MARS) using US Environmental Protection Agency Method 3052 and analyzed in the Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES) for As, Cd, Cr, Mn, Pb, Cu, Zn, Co, and Ni. A multivariate analysis of variance (MANOVA) was used to analyze the data, with a boneferroni adjustment made for multiple comparisons. The results indicated that the East and North sediments of the Jordan River were significantly (P < 0.5) more heavily impacted by trace metal pollutants than the West side, with the North area accumulating higher levels of the majority of the trace metals or metalloid evaluated. Enrichment of Co, Cr, Pb and Zn was observed on the East sediment at concentrations reaching 10,821, 4.07, 13.7, 12.7, 119.4 mg kg-1, respectively. The most substantial elevation in the concentration of trace metals occurred with Cu in the North section of the lake, increasing from 349 mg kg-1 at 0-15 cm to 1383 mg kg-1 cm depth, showing high mobility, followed by Zn which increased from 46.7 mg kg-1 at 0-15 cm to 592 mg kg-1 30-45 cm depths. The enrichment of these trace metals in the East and North sediments at the outlet of Utah Lake pose a health risk to animals and humans who use these areas for recreational or agricultural purposes.

Influence of antibiotics on Gut Microbiota and Resultant Psychological Behavior

January 01, 2015 12:00 AM
Shireen Partovi, Utah Valley University Physical Sciences The normal flora of microbiota that resides in our gastrointestinal tract acts as a community and provides a number of functions such as assisting with the breakdown of waste, protecting our tissues and organs from invading species, and playing a role in the immune response. These microorganisms may also play a role in altering our brain chemistry and changing our psychology and behavior. This mechanism is considered to be due to their ability to produce neurochemicals that mimic those produced by our own bodies. Therefore, it is possible that antibiotics may have a detrimental effect on our gut flora, thereby inducing a host of undesired side effects. These described side effects may include changes in normal psychological behavior, such as the presentation of anxiety or depression. This hypothesis is increasingly relevant as antibiotic resistance is rising due to poor education regarding bacterial infections and as the appeasement of insistent patients continues. This research aims to illustrate the harm that over-medicating may have on our behavior as a result of afflicted gut microbiota. This research will use peer reviewed journal articles that include studies and experiments to determine the influence of gut microbiota on brain chemistry and therefore psychology and behavior. Specifically, the exact implications of consistent antibiotic use and the impact on gut microbiota will be examined and a correlation will be presented. Therefore, the purpose of this research is to illustrate this problem in regards to the healthcare industry and the over-medication of patient.

A Comparative Study on the Uptake of Nutrients and Trace Metals of Two Plant Subspecies (P.australis and P.americanus) in Utah Lake

January 01, 2015 12:00 AM
Ashley Ostraff, Utah Valley University Physical Sciences Utah Lake has a long history of being impacted by anthropogenic activities like, mining, agriculture, and surrounding industry. All of these activities have contributed to the runoff that feeds the lake, increasing the likelihood that this area contains high levels of trace metals, nitrogen, andphosphorus. Utah Lake contains two subspecies of phragmites, a wetland reed, one native (P. americanus) and one non-native (P. australis). P. australis is replacing the native species at an alarming rate. P. australis is known to have a deeper root system than the native subspecies, because of this we suspect that this allow access to a less competitive soil level giving this subspecies greater opportunity for nutrient and trace metal uptake. By comparing the root zone soils of both subspecies we hope to gather results that support this hypothesis. Examination of the roots will also showthe potential influence the soil conditions have on their growth and development. This study will compare nutrient and trace metal uptake of each subspecies to determine impact. Other factors that will be assessed include plant physiology, carbon to nitrogen ratio (C:N), bioconcentration factor (BCF) and total trace metal content in tissues of both species. Samples of P. americanus and P. australis will be collected at 9 locations in Utah Lake. Soil samples at the root zone of each plant will also be evaluated. Each sampl e will be digested in the Microwave Accelerated Reaction System and analyzed in the Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) for C, N, P, K, Ag, Al, As, Ca, Cd, Cr, Cu, Fe, Hg, K, Mn, Na, Ni, P, Pb, Ti, and Zn. Results from this study will contribute valuable data to future efforts being used to preserve the biodiversity of the plants and animals that live in and around Utah Lake. The end goal of this student project is to be submitted to peer-reviewed scientific journals for publication and to be presented at academic and scientific conferences.

Chernobyl and Fukushima

January 01, 2015 12:00 AM
Valerie Jacobson, Weber State University Physical Sciences This study will compare and contrast the differences between nuclear accidents in Chernobyl and Fukushima. The environmental impacts of the “fall-out” across the two differing landscapes and the displacement of the populations due to radiation contamination, e.g., soil contamination, will be analyzed. Research on health issues, such as the increased numbers of thyroid cancer cases in Ukraine and Belarus in those who were children at the time of the disaster in 1986, will also be reviewed and compared to current health issues in Fukushima. Certain weather patterns distributed the radioactive materials over specific geographic areas that later came to be known as “hot-spots.” The study will evaluate the evacuations handled by the respective governments and the “exclusion zone” measures put in place by each. While the nuclear disasters at Chernobyl and Fukushima have been compared as similar in disaster level, research and data collection of the fallout zones, or hot spots, reveal that the two disasters are not of an equal level. Factors such as air temperature, political and social responses all contributed to the disparity in levels of the two disasters.

Spanish Advertising Use Relative to Median Household Income

January 01, 2015 12:00 AM
According to the 2010 US Census, the Hispanic population in Ogden City, Utah has grown by over 36%. This influx of population of Hispanic descent has influenced local businesses to begin advertising in Spanish through multiple mediums. To determine what factors influence a business’s decision to advertise in Spanish, locations of all print advertising in Ogden were determined through personal investigation. Second, neighborhoods and areas were divided according to census divisions that appear on the official website and median household income as well as the population of Hispanic people was recorded to determine if socioeconomic bias was present in the selection of where to advertise in Spanish. A linear regression comparing the total number of Spanish advertisements found in each geographical area was compared first to income, and then to total Hispanic population. The results of the regression illustrate a potential bias based on financial circumstances rather than ethnicity. Further study is needed to determine if this use of Spanish-advertising in the low-income areas affects Spanish-speakers’ access to healthy foods, housing, or other critical aspects of quotidian life.

High-Sensitivity Spot Tests Used for the Detection of Diphenhydramine

January 01, 2015 12:00 AM
Melissa Warren, Weber State University Physical Sciences Spot tests are commonly utilized as presumptive qualitative tests for detecting chemical substances. Such tests are the basis for detection of illegal drugs or for cleaning validations in manufacturing systems. In this study we evaluate the use of Scott’s reagent and Mandelin reagent for the detection of trace quantities of diphenhydramine (Benadryl). These reagents have been reported to give false positive tests for illegal drugs such as ketamine (cocaine) when diphenhydramine is present. Our studies were focused on enhancing the detection limits of these reagents and their application of swab tests for diphenhydramine. We report the limits of detection and swab techniques that enhance selectivity and sensitivity for this analyte.

Validation of Metal Chelation by FTIR Spectroscopy

January 01, 2015 12:00 AM
Monika Miller, Weber State University Physical Sciences Nutritionally important minerals are more readily absorbed by living systems when they are combined with organic acids. These combined metal-organic acid complexes are called chelate metals or chelates. The synthetic processes utilized to prepare these mineral chelates adds significant cost to the final product. Occasionally, manufactures sell cheaper dry blends of unreacted minerals and organic acids to gain an unfair competitive advantage in the market place. There are few if any reliable methods for reliable measurement of the extent of chelation between metals and organic acids. We report our successful application of Fourier-transform Infrared Spectroscopy (FTIR) for the quantitative determination of chelation in solid samples of mineral chelates.

Geophysical Survey of Gossans in the Eastern Uinta Mountains, Utah

January 01, 2015 12:00 AM
David Sutterfield, Utah Valley University Physical Sciences When sulfide-bearing rocks are exposed to oxidizing conditions, they become destabilized, leaving behind a framework of leached, altered, and replaced host rock called a gossan. Many of these gossans form by the oxidation of ore minerals and have been known since antiquity to be associated with ore deposits. However, the extent and quality of ore mineralization beneath a given gossan cannot readily be determined through surface sampling of minerals. Work conducted by mineral exploration professionals (in Africa, Australia, India, and the Middle East) has indicated that geomagnetic and geoelectric surveys of a gossan can be useful for constraining the shape, size, and economic potential of an associated ore deposit. Although gossans are found in Utah, there have been no published studies of these rock units either in terms of their economic potential or geophysical signature. The objective of this study was to carry out geomagnetic and geoelectric surveys to determine the geophysical signature of gossans exposed about 10 miles northwest of Vernal, Utah, on the southeastern margin of the Uinta Mountains, for the purpose of estimating the grade and depth of possible sulfide mineralization. The gossans overlie a heavily brecciated wedge of Mississippian Madison Limestone and are structurally bounded by the South Flank Fault, which forms the boundary between the Permian Weber Sandstone to the south and the Neoproterozoic Uinta Mountain Group metaquartzites to the north. Geoelectric measurements with an Iris Instruments Syscal Junior Resistivity System and inversion of a portion of the resistivity and chargeability data with the Interpex IX1D Sounding Inversion software shows a resistivity low (~200 Ω·m) and a chargeability high (~7 ms) below 23 m depth. Measurements of total magnetic field using a Geometrics G-856 Proton Precession Magnetometer were modeled with Interpex IX2D-GM Magnetic Interpretation Software and constrained with magnetic susceptibilities of exposed rocks measured in the field using a SM-20 Magnetic Susceptibility Meter. Models based upon a portion of the data show anomalies of amplitude about 100 nT and wavelength about 50 m, suggesting isolated bodies of elevated magnetic susceptibility (~0.08 SI units) with upper surfaces 20-30 m below the surface. Since, based upon the topography, the depth to the water table is also 20-30 m, the geophysical measurements are consistent with the presence of reduced sulfide bodies below this depth. Further work will include interpretation of remaining data and possible drilling for improved calibration of geophysical models.

Expression of the C-terminal Domains of the Tight Junction Proteins Claudin-16, -3, and -4 to Identify Interacting Proteins in Epithelial Ovarian Carcinoma

January 01, 2015 12:00 AM
Brandon Davies, Utah Valley University Physical Sciences Epithelial ovarian carcinoma (EOC) is the sixth most common cancer in US women. The long-term cure rates are low due to the lack of reliable biomarkers for early disease detection, resulting in advanced stage diagnosis. Approximately 75%-80% of ovarian cancers are diagnosed at stages IIIV with a 10% 5-year survival rate despite aggressive treatments. Claudin proteins are being studied as possible biomarkers as they are aberrantly overexpressed in EOC tumors. The Claudin family of proteins are a main component of tight junctions in the upper region of epithelial cells that act as gateways for the exchange of water and solutes while also helping determine the cell’s polarity and function. Changes in these proteins cause changes in phenotype and function of normal epithelial cells, such as proliferation control, trans-epithelial resistance, polarity, and solute transport. Claudin-16 is often aberrantly expressed in breast and ovarian cancer, while Claudins 3- and 4 are highly overexpressed in EOC. The location of these proteins is also correlated with oncogenic transformations and cell proliferation. Determining the specific characteristics of these Claudin proteins can prove to be of incredible benefit in cancer treatments. As these proteins are targeted during these therapies, these tight junctions may then send normal signals, which in turn can regulate the cell normally. The C-termini of the Claudins, which are cytoplasmically located, contain a known PDZ-binding motif and may interact with other junction proteins or with proteins involved in interesting signaling pathways. To identify these interacting proteins, we will use the Expresso T7 Cloning System (Lucigen Corp., Middleton, WI) to purify the Claudin-16, -3, and -4 C-terminal tails to use in pull-down assays. This process includes using affinity tags to capture the Claudin tails by FPLC, which can then be analyzed by SDS-PAGE and, ultimately, the corresponding genes cloned and sequenced. This study can potentially provide crucial information in relation to how members of the Claudin family interact with other proteins that are commonly found in tissues that are misregulated in cancer. With this data treatments can be improved to increase the responsiveness of ovarian cancer patients.

Hip Joint Center Differences between Dual Fluoroscopy, Functional Hip and Coda—Establishing a Reference Standard

January 01, 2015 12:00 AM
Michael Kutschke and Niccolo Fiorentino University of Utah Measurements of joint angles, moments, and forces can be sensitive to positional changes in the center of a joint. Due to its deep location, the hip joint center (HJC) can be difficult to determine. Regression equations and functional methods use skin markers and are commonly used to measure the HJC, yet introduce sources of error such as bony landmark identification, soft tissue artifact, and system resolution. Additionally, the accuracy of said methods cannot be established in-vivo without a reference standard. The purpose of this study was to implement a dual fluoroscopy (DF) and model-based tracking technique to quantify the subject-specific HJC position in-vivo. This reference standard (DF-HJC) was then compared to the HJC defined by regression equations (CODA) and a functional method (FHJC) using skin markers. Five subjects with normal hip anatomy provided informed consent to participate in this IRB approved study. A gait marker set was applied to the subject’s skin. The subject performed various activities involving the inferior limb while a 10-camera Vicon system measured the position of the skin markers. From these data, the CODA and FHJCs were identified. Simultaneously, the hip was visualized using a DF system, and the DF-HJC was identified using model-based tracking. The DF-HJC was then transformed to the Vicon coordinate system for comparison with the CODA and FHJCs. The average Euclidean distance (and standard deviation) for the five subjects from the DF-HJC was 2.0 (0.6) cm for CODA and 1.3 (0.4) cm for the FHJC. To our knowledge this is the first study to use DF and model-based tracking to measure the in-vivo position of the HJC. This technique affords greater accuracy in determining subject-specific bone geometry and visualization of deep hip anatomy, thus may be considered a reference standard for identifying the HJC.

A Plan for Complete Recycling of Stormwater on the Utah Valley University Main Campus, Orem, Utah

January 01, 2015 12:00 AM
Paul Robertson, Utah Valley University Physical Sciences Evaluation of Utah Valley University’s stormwater plan reveals a simple system meant to collect stormwater into the city storm drains as quickly as possible. It is, however, vastly underdeveloped and many unspectacular summer and springtime storms have resulted in property damage, including those of nearby residents. The stormwater runoff has also collected concentrated amounts of hydrocarbons, nitrogen and heavy metals which are being fed directly into Utah Lake, acting as a significant source of pollution for the lake environment. The intentions of this project are to design a stormwater management plan that can withstand a 100 year, 24 hour event and prevent pollutants from entering the Utah Lake system. Mapping and modeling of the University’s storm drains will be accomplished using GIS as well as modeling for efficient retention sites on campus. Captured stormwater will then be used for a variety of functions here on campus and runoff into the adjacent lake will be reduced to insignificant values. Decisions regarding the ultimate implementation of this project will work in concordance with the University’s master plan of future development in order to realistically secure a reliable, low-maintenance system.

Analysis of Flavonoids, Catechins, and Proanthocy anidins in Cacao Chocolate

January 01, 2015 12:00 AM
Brad Draper, Hannah Firth, and Patricia Stauffer, Weber State University Physical Sciences It is widely known that cacao beans are one of the most abundant sources of naturally-occurring flavonoids on earth. However, chocolate products contain only a small percentage of the original flavonoids present in cacao beans, indicating that up to 95% of these flavonoids are lost during the manufacturing of chocolate. However, no one has identified the specific events or steps in chocolate preparation that destroys these flavonoids. We have measured the concentrations of a variety of nutritionally beneficial flavonoids at each step of the chocolate manufacturing process to identify the related extent of flavonoid losses. Following multiple-step extractions and sample preparations, we utilized chemical techniques of TLC, UV/VIS Spectroscopy, HPLC, and organoleptic testing to measure the levels of catechins and proanthocyanidins at each step of the chocolate making process.

Use of Phage and Vancomycin Treatments Against Staphylococcus aureus Biofilms

January 01, 2014 12:00 AM
Kelly Hoerger, University of Utah Physical Science Implant devices such as orthopedic, dental, and cochlear implants are commonly utilized as part of many medical treatments. However, these foreign objects are susceptible to bacterial contamination, thereby putting the host at risk of an infection that is challenging to eliminate due to biofilm formation. Biofilms are formed when a bacterial cell adheres to and colonizes such metal or plastic surfaces. The cells aggregate to form and embed themselves in a thick and protective polysaccharide matrix, making biofilms resistant to many antibiotic treatments.

Geoelectric and Magnetic Characteristics of Fracture Traces: A Tool for Groundwater Exploration in Igneous Rocks

January 01, 2014 12:00 AM
Jeremiah Rundall, Utah Valley University Physical Sciences Utah Valley University has a long-term program of groundwater development in the Trans-Mexican Volcanic Belt in the state of Guanajuato, Mexico, in cooperation with Choice Humanitarian. Thus far, we have drilled a successful 50-m well in basalt and an unsuccessful 22-m well in rhyolite. Well sites have been chosen based on spring locations and fracture traces (linear features as seen on aerial photos). The objective of this study is to measure and model the geoelectric and magnetic characteristics of fracture traces as a means of determining which fracture traces are most indicative of actual fractured rock. Thus far, studies have been carried out on 20 fracture traces in rhyolite in the Trans-Mexican Volcanic Belt, six fracture traces in rhyolite/diorite/monzonite of the La Sal Intrusives in the La Sal Mountains of Utah, and one fracture trace in rhyolite of the Soldiers Pass Formation west of Utah Lake. The total magnetic field has been measured at about 1-m spacing along profiles perpendicular to fracture traces using the Geometrics G-856 Proton Precession Magnetometer. Geoelectric soundings for resistivity, chargeability and self-potential have been carried out both on and off fracture traces using the Iris Instruments Syscal Junior Resistivity Meter with the Schlumberger array parallel to the fracture trace at spacings in the range AB/2 = 2.29-137 m. Geoelectric profiles have been carried out perpendicular to fracture traces (array parallel to the fracture trace) at spacings AB/2 = 15.2 m and 137 m. Geoelectric and magnetic modeling is being carried out using the 1X2D-GM Magnetic Interpretation Software and the 1X1D Sounding Inversion Software. Preliminary results indicate that some fracture traces are associated with both magnetic and electrical resistivity lows consistent with intermediate depth (~ 50 m) fractured rock, although not all fracture traces have these characteristics. Further results will be reported at the meeting.

Optimizing the measurement of monomethylmercury in natural waters by direct ethylation

January 01, 2014 12:00 AM
Christopher Mansfield, Westminster College Physical Science The method currently used to measure monomethylmercury (MMHg) in natural waters involves a lengthy distillation step in order to remove certain ions and dissolved organic matter that have been reported to interfere with the subsequent reaction in which MMHg is ethylated. It has recently been reported that the analysis of MMHg in seawater by direct ethylation was successfully carried out, thus removing the day-long distillation. However, the effect of many potential interfering ions and compounds on this method have not been characterized, and it has not been tested for use in natural freshwaters or the hypersaline waters of the Great Salt Lake. Thus, these became the two goals of this project. We found that optimal ethylation conditions included buffering samples to pH 4.0-4.1, reducing the amount of sodium tetraethylborate, adding EDTA to complex interfering trace metals, and adding chloride to overcome interferences by thiols and organic matter. We have since employed this improved method to analyze MMHg in natural water samples from fresh and saline lakes, achieving > 90% MMHg spike recoveries without the use of distillation.

Band gap tunability of protein-based ferrhihydrite nanoparticles

January 01, 2014 12:00 AM
Stephen Erickson, Brigham Young University Physical Sciences “The spherical protein ferritin has often been used to fabricate nanoparticles of various shapes and compositions with its walls. Ferritin occurs naturally with a ferrihydrite (FeOOH) mineral core, but it has also been used to synthesize nanoparticles of several other semiconductors. While the methods for creating these nanoparticles within ferritin are well established, the characterization of such nanoparticles is not. Previous studies on native ferrihydrite core ferritin disagree on the band gap, giving values anywhere from 1.1-3.5 eV, depending on the method. We have used absorption spectroscopy to measure these band gaps with an unprecedented accuracy of up to .01 eV. This method also allowed us to determine that ferrihydrite nanoparticles are indirect gap semiconductors. By employing this method on particles of various sizes, we have shown the effects of quantum confinement, resulting in variations in the band gap. We also provided the first ever direct evidence that ferritin works to crystalize its core with time, an effect that has long been theorized but never observed. By characterizing the effect of size and time on nanoparticle band gap, we have shown the potential for selectively tuning that gap. This opens up a world of possible applications in light harvesting and photo detectors. By controlling the band gap, we will be able to select which wavelengths of light are absorbed, allowing for full spectrum photovoltaic cells and wavelength specific optical detectors. Future studies will focus on nanoparticles of other metal hydroxides and various anion replacements to further expand our tunable range of band gaps.

An insulating gasket for electrical measurements in a diamond anvil cell

January 01, 2014 12:00 AM
Jasmine K Bishop, University of Utah Physical Sciences In my presentation, I will discuss the method of creating insulating gaskets for high pressure experiments using diamond anvil cells. In standard diamond anvil cell pressure experiments, metal gaskets are typically employed. However, in order to study the electric and magnetic properties of a sample without worrying about interference of the metal gasket itself, insulating gaskets are used. The insulating material needs to be ductile and yet hard enough to maintain a certain level of structure. Epoxy is ideal for ductility but is not hard enough to maintain a diamond indent under pressures generated by diamond anvil cells. When mixed with a diamond powder however, the mixture is both ductile and structurally sound. In this study we have modified the previous methods of insulating gasket preparation by addition of a metal sheet to increase the strength and ductility of the gasket. The part of the gasket that is metal can be used as an electrical lead to measure sample’s conductivity. In this design the mixture of diamond and epoxy is applied to a thin 100 micrometer metal sheet and a focused beam of high power IR laser is used to drill a hole in the gasket . I will describe the design of the optical path and the details of the gasket preparation and will present some of the gaskets that I have made.

Characterization of undocumented bonneville shorelines with evidence of possible tsunamis

January 01, 2014 12:00 AM
Brittney Thaxton, University of Utah Physical Sciences There are many undocumented shorelines seen in Utah. As many as 30+ shorelines have been identified along the edges of the basin throughout the state. The purpose of this study is to characterize undocumented shorelines and identify potential evidence for tsunamis that might have occurred in Lake Bonneville thousands of years ago in areas such as Little Mountain, Stansbury Island, and Promontory Point, Utah. Lake Bonneville existed 32-10K years ago and was influenced by the Wasatch fault which was active as early as the Miocene. Scarps of this age are common and range between 15-20 feet in height (Machette, Personius, Nelson, Schwartz, Lund 1991; Dinter, Pechman, 2004a and 2004b). Several faults beneath Lake Bonneville could have produced tsunamis. The more water that is displaced the greater the tsunami will become and leave a greater impact onshore (Dutykh and Dias 2009). The East Great Salt Lake fault cuts NS across Bear River Bay east of Promontory Range. This fault line is an excellent candidate for causing a tsunami during the Lake Bonneville highstand because it is beneath the Great Salt Lake meaning it would have uplifted the entire water column of Lake Bonneville and since it is also close to the Promontory Range, it is likely it would leave tsunamite evidence along the shore. The fault rupture interval is between 3,000 and 3,500 years meaning fault ruptures could produce a tsunami during the lake’s high stand. Tsunamite is the term used for deposits related to tsunamis. The tsunamite features found along the shorelines will be similar to sedimentary features such as normally graded sand, mudstone clasts, and other gravel deposits that are out of place with the known shorelines (Shanmugam 2006). This is a unique opportunity to discover ancient tsunami evidence in Utah, a topic that has yet to be pursued.

Use of the Manning Equation to Estimate Stream Discharge through Natural Slot Canyons and Artificial Slots

January 01, 2014 12:00 AM
Jeff Selck, Utah Valley University Physical Sciences Stream discharge through narrow, deep slot canyons can be a major source of groundwater recharge in the arid Southwest. Various state and federal agencies use the empirical Manning Equation to predict the discharge through artificial slots created for diversion of rivers around coal mines. However, it is not obvious that the Manning Equation could be applied to slot canyons or artificial slots as the data base used for development of the Manning Equation did not include either natural streams or artificial structures for which most of the friction occurs along the sides of the channel. The objective of this research is to develop an empirical formula for estimating the Manning roughness coefficient for flow through narrow, deep slots. The objective is being addressed by measuring stream discharge through natural slot canyons in southern Utah that are fed by perennial streams, springs or dam outlets. Based on measurements at ten sites along eight streams, the best estimate for the Manning roughness coefficient is n = 0.873nJ exp(5.108A/w2) where A is stream cross-sectional area, w is stream width, and nJ = 0.39S0.38R-0.16 is the roughness coefficient estimated by Jarrett (1984) for high-gradient streams, in which S is slope of the stream bed and R is hydraulic radius (ft). The new formula estimates stream discharge with a mean accuracy of 44%. On the other hand, Jarrett’s (1984) formula underestimates stream discharge by 1-2 orders of magnitude for aspect ratios A/w2 in the range 0.6-0.7. The new formula will be refined by additional measurements on slot canyons, artificial diversions, and a laboratory hydraulics bench. It is hoped that the new formula will lead to a more realistic design for artificial slot diversions.

Structural health monitoring of natural arches in the Moab area

January 01, 2014 12:00 AM
Ben White, University of Utah Physical Sciences We evaluated the ambient noise wavefield of select arches in the Moab area as a means to assess changes in their structural health over time. Our measurements revealed that the fundamental frequency of vibration at Mesa Arch and Corona Arch are both in the range of 3 Hz, while other spectral peaks are likely related to higher-order vibrational modes. We use numerical modeling for modal analysis in an attempt to predict and visualize the various modes of vibration and their frequency Resonant frequencies are projected to change with snow or rain loading or after a strong earthquake. By monitoring resonant frequencies over time and under various environmental conditions, our goal is to detect reversible and/or irreversible changes that may accompany damage of these arches.

Wavelength Detection from Filtered Photodiodes

January 01, 2014 12:00 AM
Nils Otterstrom, Brigham Young University Physical Sciences Filtered photodiodes show potential as inexpensive laser wavelength meter. Photocurrents are measured digitally. The photocurrent is digitized using externally controlled integration times to achieve the highest precision possible from the digital to analog converters on the photosensor chip. Using an algorithm we’ve developed and calibrated intensity curves, we can precisely calculate wavelength from the output of the different photodiodes. Limitations due to etaloning from reflections off of the surfaces of the filters were analyzed and effectively mitigated, allowing the device to achieve high precision with a stability of 0.102 nm over several hours.

How many class ii wells present a risk for induced seismicity?

January 01, 2014 12:00 AM
Isaac Allred, Utah State University Physical Sciences We examine the number and location of Class II wells in the central U.S. to constrain future work on the potential for induced seismicity. The EPA, state oil & gas commissions, scientific papers, and media stories frequently state that there are ~140-160 k Class II wells. Excluding California, we expected to find approximately 120 k wells; but instead found ~ 82 k active injectors in the available databases. State datasets vary in accessibility, availability, and content of well data. Lack of digitized well data also limited our online search, and several states require FOIA requests to be filed. State databases with poor searching and sorting functions further complicated data mining, requiring a well-by-well search, and for several states, well locations and injections were difficult to determine. Common discrepancies between EPA well totals and state database totals appear to be due to counting of plugged and abandoned wells, and wells that are permitted but not in use. No data has been retrieved for about 1,600 wells on tribal lands and Indian Country, and several states would not provide “confidential” well data. Of the active injectors, at least 55 k wells inject into producing, pressure-depleting oil and gas formations and are less likely to generate damaging earthquakes. Of the ~ 16 k non-EOR wells, we found 3,400 wells that inject at depths > 1.8 km, where most M > 3.0 midcontinent earthquakes occur. We will present examples of data from several states, that show the locations and depths of injectors, earthquakes, depth to basement, and we will provide an overview of the public file sharing system of the data. We will search for correlations between the depth of injection, the number of injection wells, recent seismic activity, the nature of the subsurface geology, and regional stresses.

Evolution of Burrowing Mayflies: Tusks be gone

January 01, 2014 12:00 AM
Stephanie Bartlett, Utah Valley University Physical Sciences Ephemeroptera, commonly referred to as mayflies, are found throughout the world. Within the order of Ephemeroptera resides a superfamily, Ephemeridea, commonly called burrowing mayflies. This common name was acquired due to certain physical and behavior characteristics present as nymphs. Ephemeridea nymphs live in the silt of aquatic environments and have adaptations for burrowing which include strong legs, as well as mandibular tusks. One exception to this is the family Behningiidae, which burrow, but lack the commonly associated mandibular tusks. Morphological data supported Behningiidae as sister to the other tusked burrowing mayflies, indicating that first burrowing behavior evolved and was later followed by the development of tusks(McCafferty; 1975 and 2004). While morphological data provides important insights into the evolution and phylogeny of mayflies, the development of molecular phylogenetics offers new contributions when determining evolutionary relationships within this superfamily. Objective: The purpose of this study is to investigate the relationships of the families of burrowing mayflies in order to test the hypothesis of tusk evolution. Methods: The specimens were acquired from collection efforts and colleagues. For each specimen the following laboratory procedures were carried out: DNA extraction, gene amplification via polymerase chain reaction, visualization via gel electrophoresis, and DNA sequencing. The genes targeted for sequencing included 12S mitochondrial rDNA, 16S mitochondrial rDNA, 18S nuclear rDNA, 28S nuclear rDNA, H3 nuclear protein coding, and CO1 mitochondrial protein coding. Data was also acquired from Genbank in order to augment missing data. Taxon sampling consisted of around 20 ingroup and 5outgroup taxa. Phylogenetic relationships were estimated using Maximum Parsimony, Maximum Likelihood, and Baysian methods. Conclusion: The families Behningiidae, Potamanthidae, Palingeniidae were supported as monophyletic. Behningiidae nested well within the other burrowing families. Hence, tusks evolved and were subsequently lost in the family Behningiidae even though it retained the burrowing lifestyle in the nymph.

Nondestructive Isolation of Forensic Analytes with Ionic Liquids

January 01, 2014 12:00 AM
Mattie Jones, Dixie State University Physical Sciences New methods aimed at forensic analysis of sensitive, minute samples are critical to the intelligence community. In particular, successful extraction of dyes from materials found at crime scenes will provide innumerable benefits for matching, identifying, and finding origins of these materials and dyes. Current methods of isolating components of samples by their unique chemical properties are lengthy and often destroy important forensic evidence. Ionic liquids possess the necessary chemical properties to ensure efficient extractions, while maintaining the forensic signatures of the original materials. They also provide a one-pot approach that avoids intermediate species and increases analyte yield while extracting and separating constituents in a more efficient manner. By combining traceable dyes with an ionic liquid, the versatility of single-component extraction-separation-identification was demonstrated. Analysis using absorption and fluorescence spectroscopy validated complete extraction and recovery of trace analytes. Following extraction and isolation, identification by infrared spectroscopy has provided evidence of preserved quality and complete separation of material and dye. This novel approach to forensic analysis is advantageous particularly when sample sizes are extremely limited, but it can be readily scaled to larger applications. Developing a simple and affordable method of achieving specific molecular interactions provides a solution for often unidentifiable evidence in crimes. Harnessing the versatility of ionic liquids in a high-yielding recovery and efficient single-pot methods will enhance forensic abilities for the intelligence community and forensic investigators.

Improving a Laser Color Sensor Based on a Photodiode Array Using Measurements Made with a 461nm Tunable Laser

January 01, 2014 12:00 AM
Tyler Jones, Brigham Young University Physical Science This project takes advantage of an inexpensive integrated circuit to create a wavelength meter. The circuit has an array of photodiodes, each of which has an optical filter of a different color. The filters cause each diode to respond differently to different wavelengths of light. The relative amplitudes of the signals are then used to compute a wavelength based on known responses for various wavelengths recorded in a calibration stage. The project focuses on improving precision of the hardware and developing an algorithm to do the computation.

Novel Bioactive Compounds Produced by Juniperus osteoperma

January 01, 2014 12:00 AM
Kip Brower, Utah Valley University Physical Sciences Juniperus osteoperma has been reported to exhibit beneficial pharmacological activity against symptoms of diabetes, as a traditional treatment for kidney ailment and the essential oil of juniper berries has also been subject to investigation for antioxidant activities. Endophytes, particularly endophytic fungi, have produced numerous novel bioactive compounds, several of which are currently used as antifungal, anti-bacterial, and anti-cancer agents in organisms other than their plant hosts. This investigation looks into the possibility of endophytic fungi being a means of producing compounds that may be a functioning agent in antioxidant, antifungal, or hyper/hypoglycemic activities of Juniperus osteoperma. The investigation involves samples of Juniperus osteoperma collected from multiple different locations within Utah, and isolates the resident endophytic fungi.

Effects of Environmental Pollutants on Endophytes in Rumex crispus

January 01, 2014 12:00 AM
Yonic Michaca, Utah Valley University Physical Sciences It is well known that some of the worst air pollution in the country each winter is found along the Wasatch front in northern Utah. This study examines the effects of environmental pollutants on the production of the novel compounds produced by the endophytes found in Rumex crispus. The Rumex crispus plant was selected due to its natural medicinal uses. It is anticipated that environmental pollutants have an effect on the production of bioactive compounds in order to protect their plant host from foreign pathogens. The theory is that the more stressful environment a plant lives in, i.e. desert climates, high altitude, and man-induced stresses such as pollution, the more bioactive compounds the endophytes produce as a response to protect their plant host. This study analyzes the effects of environmental pollutants along the Wasatch front on the production of novel bioactive compounds produced by the endophytes found in Rumex crispus. Plant samples are also collected from sites near the Wasatch front, but they are not exposed to the same amount of air pollution to be used as a control.

Protein phosphatase (PP) 1 and PP2B do not contribute to palmitate-induced disruption of eNOS enzyme function.

January 01, 2014 12:00 AM
Ting Ruan, University of Utah Physical Sciences Cardiovascular complications are more prevalent in patients with diet-induced obesity and type 2 diabetes. Both of these conditions are associated with elevated levels of free fatty acids (FFAs). Elevated FFAs might precipitate cardiovascular complications by disrupting endothelial nitric oxide (NO) synthase (eNOS) enzyme function. The physiologically abundant saturated FFA palmitate decreases eNOS phosphorylation at serine 1177 (p-eNOS S1177) in a ceramide and protein-phosphatase 2A (PP2A) -dependent manner. p-eNOS S1177 is a positive regulatory site on the eNOS enzyme. As such, p-eNOS S1177 to total eNOS can be used as an estimate of eNOS enzyme function. We sought to determine the extent to which two other phosphatases that are abundant in the cytosol i.e., protein phosphatase 1 (PP1) and protein phosphatase 2B (PP2B) might contribute to palmitate-induced reductions in p-eNOS S1177 to total eNOS. Bovine aortic endothelial cells (BAECs) were treated for 3 hours with 500 uM palmitate or vehicle in the absence and presence of the PP1 inhibitor tautomycin (3 uM). p-eNOS S1177 to total eNOS was assessed using immunoblotting procedures. Palmitate-induced reductions (30±3%, p<0.05, n=3) in p-eNOS to total eNOS were similar in the absence and presence of tautomycin. These data indicate that PP1 does not contribute to palmitate-induced disruption of eNOS enzyme function. Next, BAECs were treated for 3 hours with 500 uM palmitate or vehicle in the absence and presence of the PP2B inhibitor cyclosporine (100nM). Palmitate-induced reductions (31±4%, p<0.05, n=3) in p-eNOS to total eNOS were similar in the absence and presence of cyclosporine. Taken together, these data suggest that neither PP1 nor PP2B contribute to palmitate-induced reductions in p-eNOS S1177 to total eNOS.

Controlled Zinc Oxide Hexagonal Prism Formation with Ethanol Amines

January 01, 2014 12:00 AM
Brielle Woolsey, Brigham Young University Physical Sciences A method of forming zinc oxide (ZnO) single crystal hexagonal prisms is derived from a standard sol-gel method. The new synthesis requires water, zinc acetate, and diethanol amine (DEA) to create a zinc hydroxide/zinc hydroxide acetate gel, which forms single crystal hexagonal prisms upon heating. Characterization of the gel was done by XRD as well as by XRD high temperature chamber (HTK) to determine the role of temperature in prism formation. SEM images showed hexagonal prisms were of uniform size (approx. 0.5 — 2 µm). TEM and electron diffraction images showed a change from randomly oriented particles to an ordered single crystal after heating. Ethanol amines, heating of the gel, and the zinc acetate salt proved to be critical to prism formation.

Utilizing Low-cost NIR Imaging Systems in Medical Physics

January 01, 2014 12:00 AM
Kim Nielsen, Utah Valley University Physical Sciences Infrared Thermography (IRT) has become popular in the medical field for various applications and procedures. One such application involves the use of IRT in the active detection of skin lesions and neoplasms. More specifically, medical professionals are using IRT as a non-invasive method for the early detection of harmful lesions, such as melanoma.

Bio-Inspired Molecular Manganese-Calcium Catalysts for Water Oxidation

January 01, 2014 12:00 AM
Nicholas Labrum, Utah State University Physical Sciences Increasing concerns on the anthropogenic climate change, rising global energy demands, and diminishing fossil fuels have urged the search of alternative carbon-neutral and sustainable energy resources, among which solar energy stands out as the most promising target since it is the largest exploitable resource. However, its nature of diurnal variation, intermittence, and unequal distribution requires efficient and cost-effective capture, conversion, and storage. Generation of chemical fuels, such as hydrogen, from solar energy input represents an appealing approach to meet this goal. An ideal scheme would tap hydrogen from the splitting of water with concomitant evolution of oxygen. Due to the nature of the four-proton and four-electron process, water oxidation is the bottle neck of the overall water splitting process. Nature catalyzes water oxidation using an oxygen evolving complex (OEC) in photosystem II. This project aims at mimicking the OEC to prepare and investigate bimetallic Mn-Ca catalysts for water oxidation catalysis. Calcium has been reported to be critical in water oxidation by OEC, however its functional role has not been well studied. By positioning a calcium atom in the second coordination sphere of manganese in molecular scaffolds, we are able to systematically study the functional role of calcium at the molecular level. Our project will prompt the development of water oxidation catalysis and benefit artificial photosynthesis at large.

Lyman-alpha Emission as a Probe of Galaxy Environments

January 01, 2014 12:00 AM
Joshua Wallace, University of Utah Physical Sciences We study the effect of the circum-galactic gas environment on the observed Lyman-alpha emission from Lyman-alpha emitting galaxies. These galaxies are primarily high-redshift star-forming galaxies that are important in understanding both galaxy and universe evolution. The Lyman-alpha photons emitted from these galaxies should hold valuable clues about the general environmental properties (such as gas velocity, density, and distribution) around galaxies, since the photons can be strongly affected and scattered by the neutral hydrogen atoms that make up the majority of the gas. However, explaining exactly how a galaxy’s environment affects its Lyman-alpha emission is very complex and currently cannot be predicted with complete certainty — every time a Lyman-alpha photon interacts with a hydrogen atom, its direction and frequency are changed, which in turn affects how far it will travel before the next interaction. We study the environmental effects on Lyman-alpha emission properties by applying Monte Carlo Lyman-alpha radiative transfer modeling to simple analytic models and find an important role of the anisotropic distribution of gas in determining the observed photometric and spectral properties of Lyman-alpha emission. We further perform a detailed investigation by applying the radiative transfer modeling to realistic star-forming galaxies in high-resolution cosmological galaxy formation simulation. From our analysis so far, we find the Lyman-alpha emission from the models shows a strong dependence on viewing angle, as well as correlations between observed spectral features and environmental conditions. We plan to model and analyze a large sample of simulated galaxies to better describe and statistically quantify the above dependence and correlations. Our study will lead to a better understanding of the effects galaxy environment on the observed Lyman-alpha emission and in turn provide a theoretical guide on how to use observed Lyman-alpha emission to learn about the environments of star-forming galaxies and hence galaxy formation and evolution.

Patterning and Functionalizing Carbon Nanotube Forests for Antigen Detection

January 01, 2014 12:00 AM
Benjamin Pound, Utah State University Physical Sciences Carbon Nanotube (CNT) Forests are vertically grown carbon nanotubes. They can be as tall as millimeters, with radii from less than one nanometer (single-walled) to tens of nanometers (multi-walled). Their high surface area to volume ratio provides a unique material system for biosensor applications. However, the CNT surface does not provide covalent bonding sites to many antibodies of interest. One approach is to attach linker molecules with aromatic rings via π-stacking to the CNT surface and activating the linker molecules to bind covalently to specific antibody molecules. Unfortunately, the conventional solution-based functionalization approach often leads to collapse of the CNT forest and hence a significant loss of binding sites. In this presentation we demonstrate that CNTs can be lithographically defined to form various structures that are resistant to liquid-induced collapse. We show that the CNT forest can be functionalized with 1,5-diaminonaphthalene as a linker molecule and its coverage can be characterized by fluorescence spectroscopy.

Methods to decrease error in conductivity measurements of highly disordered materials

January 01, 2014 12:00 AM
Phillip Lundgreen, Utah State University Physical Sciences By developing a low-noise, high-voltage battery power supply, system noise has been reduced, increasing accuracy of conductivity measurements of highly disordered insulating materials. The method involves a simple parallel plate capacitor setup with the sample sandwiched between electrodes, a voltage potential applied to one electrode, and a measurement device applied to the back electrode measuring current. Previous methods involved use of a commercial power supply with a claimed low noise and high linearity, but with a low AC output ripple. At high voltages (1000 V), however, the noise became apparent in the readings and an unacceptable uncertainty was introduced in our precision conductivity measurements. Through the use of a stable dc battery high-voltage power supply, we were able to reduce noise in current measurements and achieve a more accurate measurement of conductivity for various samples.

General Approach for Engineering Small-Molecule-Binding DNA Split Aptamers

January 01, 2014 12:00 AM
Alexandra Kent, University of Utah Physical Sciences Prescription drug overdose and abuse is a leading cause of death in the United States. It is a serious issue and has become increasingly problematic as opioids are being prescribed at a higher frequency. For this reason, fast, accurate detection of small drug molecules is crucial. The current standard for use in clinical drug detection is an enzyme-linked immunosorbent assay (ELISA) that uses a series of antibodies to bind to the target drug and enable quantification via a colorimetric output. However, the antibodies used in an ELISA often cannot distinguish between similar molecules. Aptamers are short sequences of DNA that have emerged as a promising alternative to antibodies, as they are generated in vitro, where negative selections can be used to increase target selectivity. These aptamers can be cleaved to make split aptamers that only assemble in the presence of the target small molecule. One inherent problem of this system is the need for split aptamers that are selective for their small molecule targets. While there are many known aptamers, there are only a few known split aptamers that bind small molecules. Separating aptamers with a privileged, three-way-junction structure provides a reliable method to generate new split aptamers.

Catalysis of the Reduction of Sodium Borohydride with Microenvironments of Gold Nanoparticles

January 01, 2014 12:00 AM
Frederickk Sudbury, University of Utah Physical Sciences Triphenylphosphine stabilized gold nanoparticles were synthesized using a method developed previously by the Jennifer Shumaker-Parry group. Aminated silica colloids were obtained from the Ilya Zharov group. The gold nanoparticles were adhered to the silica colloids using a method developed for another purpose by the Zharov group. The presence of the particles on the silica colloids was confirmed using both scanning and transmission electron microscopy. The catalytic activity of the gold nanoparticles both with and without adhesion was investigated. It was found that free nanoparticles had significant catalytic activity, in agreement with previous research. Gold nanoparticles attached to silica colloids do not seem to exhibit the same level of catalytic activity as the free particles. It was also found that not all the gold nanoparticles adhered to the surface of the silica particles. Experiments were conducted to determine if there was a critical concentration of silica colloids that would allow for high levels of adhesion of the gold nanoparticles. It was found that only by adding a significant excess of silica colloids to the solution can all the gold nanoparticles be removed from the solution. It was also found that the silica can be saturated with gold nanoparticles by including a small amount of them in a very concentrated gold nanoparticle solution. Further studies for functionalization of the silica colloids and the ability to physically isolate the silica with gold nanoparticles from free nanoparticles are currently in progress.

Analysis of Untriggered Small Events in the HAWC Telescope

January 01, 2014 12:00 AM
Ian Sohl, University of Utah Physical Sciences Current software in the High Altitude Water Cherenkov (HAWC) Telescope data collection system only triggers saving of events that pass a specified number of hits and energy. Our analysis of the untriggered (and unsaved) data will identify the number of potentially significant events that are bypassed by the existing software. By the application of a sorting function onto current Monte Carlo generated data, we can categorize incoming events into various types of particles, primarily muons, while also filtering out randomized noise from the photomultiplier tubes used in HAWC. Due to the relatively low rate and energy of the photomultiplier tube noise, many of the significant events for the untriggered set are potential useful particles. Our triggering algorithm, based on the energy, timing and saturation of the tanks is primarily focused on separating muons from the bulk of data. These raw rate data for small events are a relatively unexplored area for HAWC and measurements can be useful for a variety of calibration tasks for the telescope. They can be useful for understanding the impact of the atmosphere on the telescope’s data collection, as well as the triggering of the photomultiplier tubes through secondary sources. This untriggered data can also be used in a variety of useful forms not directly related to HAWC’s primary usage goals, primarily solar physics. Due to the relatively low energy and hit count from solar events, most of the data are thrown away by the triggering algorithm.

Investigating Anthropogenic Impacts on the Utah Lake-Jordan River Transition Zone Using a Multi-proxy Approach

January 01, 2014 12:00 AM
Buchanan Kerswell, Utah Valley University Physical Sciences This project is designed to investigate anthropogenic impacts on the geochemistry and physical characteristics of Utah Lake-Jordan River transition zone, in Utah Valley, Utah. The zone has experienced dramatic, multifaceted shifts since European settlement in 1847, especially in recent decades. Our chosen study location is uniquely situated to capture changes recorded in the sediment cores due to land use, nutrient enrichment, vegetation shifts and river dynamics since pre-settlement.

Mode transitions in strings with an abrupt change in mass density

January 01, 2014 12:00 AM
Nathaniel Wells, Utah Valley University Physical Sciences Previous research with bottle-shaped thermoacoustic prime movers has revealed hysteresis with transitions to higher modes as the cavity length is varied. A string with an abrupt change in mass density was studied to investigate potentially similar behavior. Three base guitar strings were studied at three different tensions with weights of 25, 30, and 35 lbs. Each string consisted of a “thin side” that was stripped to the stainless steel core and a “thick side” with an outer wrapping of nickel around the core. The strings studied had diameters of 0.65, 0.45, and 0.50 mm on the thin side and 2.14, 1.31, and 1.24 mm on the thick side, respectively. An anchor was attached on one end of a short board with a pulley at the other for hanging the weight. The end of the thick side of the string was attached to the anchor, and the string was guided over the pulley, with the change in mass density occurring approximately 12 cm from the pulley. Measurements were taken after placing a glass jar under the thick end of the string, between 42 cm and the position of the change in mass density, in 3-cm steps. The string was plucked and the dominant frequency was recorded with a microphone at each location. Frequency data is generally consistent with a solution to a 1D wave equation. Preliminary results indicate mode transitions occurring for all strings, with several hysteresis region candidates.

Correlation analysis of military aircraft jet noise

January 01, 2014 12:00 AM
Zachary Anderson, Brigham Young University Physical Sciences Correlation analysis is useful in extracting spatiotemporal relationships between signals and can be used to examine features of near-field jet noise for source properties. Characteristic correlation envelopes determined by Harker et al. [JASA 133, EL458 (2013)] can be used to relate correlation lengths to fine and large-scale turbulent structures. As an extension, cross-correlation shows spatial variation in jet noise and further reveals the transition between short (fine-scale) and long (large-scale) correlation lengths. These analyses are applied to a military jet dataset of a ground based linear microphone array positioned 11.6 m from the jet axis. Correlation analyses over multiple engine conditions and observation directions are reported. In particular, a maximum correlation coefficient greater than 0.5 exists over a range spanning multiple wavelengths in the region of greatest overall sound pressure level at military power. [Work supported by ONR.]

Creation of coherent complex pressure measurements through overlapping scan-based measurements

January 01, 2014 12:00 AM
Jazmin Myres, Brigham Young University Physical Sciences In scan-based array measurements, stationary reference sensors are needed to temporally correlate the different measurement scans and produce coherent complex pressure fields. Because the number of references required increases with the number of subsources contributing to the sound field, an extended, partially correlated source comprising many ill-defined sources can result in significantly increased measurement complexity. A different approach to creating spatiotemporally coherent pressures is demonstrated here. Scan based measurements of a partially coherent line source have been taken in an anechoic chamber. This experimental data has been used to explore “stitching” together a complex pressure field by spatially overlapping measurement scans instead of using separate reference channels. Various methods of stitching have been explored and the most robust method identified. Unwrapping of intrascan phases is first accomplished with a two-dimensional phase unwrapping algorithm. Individual scan positions are then stitched together using median phase differences between multiple adjacent scans to create coherent planes of data. Amplitude-stitching is done by averaging across scans and preserving the integrated squared pressure across the overall aperture. This method has been verified using reference microphones. This stitching method has been applied to scan based measurements of a military aircraft, exhibiting its effectiveness dealing with a partially correlated complicated source. This method works well for low-frequency jet data, where there is not a ground-based interference null creating a physical phase discontinuity. This technique provides direction for efficient experimental design for scan-based array measurements of extended sources. [Work sponsored by ONR.]

Melting Glaciers: A source of mercury and other trace elements to high elevation ecosystems at Grand Teton National Park?

January 01, 2014 12:00 AM
Greg Carling, Brigham Young University Physical Sciences Wyoming the second most glaciated state in the lower 48 United States has seen drastic changes in the size of its glaciers. Glaciers in high elevation ecosystems of Grand Teton National Park are not anywhere near to the size that they were 100 years ago. The glaciers continue to decrease in size every day. As the environment changes the glaciers change in size and can be affected by many factors in the environment. Deposition of particulate matter from the atmosphere into the glaciers occurs as pollution is becoming worse and more common. Studies done throughout the world have shown that glaciers can act as a source for mercury and other trace metal elements in high elevation ecosystems. Through the assistance of the UW-NPS Research Station Dr. Greg Carling of BYU and his team of graduate and undergraduate assistants retrieved 100 glacial melt water samples from the Middle Teton, and Teepee Glaciers and stream sites in Garnet Canyon, and from the Teton Glacier in the Glacier Gulch area. In the data analysis completed up until this point, concentrations of various trace elements have found in sample sites in close proximity to the Middle and Teton glaciers on the glacial moraine. We hypothesize that these glaciers act as a source for mercury and trace elements that can then be transported to lower elevation ecosystems within the Greater Yellowstone Ecosystem.

Precise External Timer

January 01, 2014 12:00 AM
Adam Kingsley, Brigham Young University Physical Sciences In the construction of various sensors in the lab, highly accurate integration times are required. It is advantageous to have a precise external timer to run the circuitry contained in the sensor. By taking a signal in the range of megahertz down to hertz or milihertz range, it is possible to control the start and stop times for circuits. Overall this means that every time a measurement is taken it represents the same length of time.

Preventing Mode-hops in Extended-cavity Diode Lasers

January 01, 2014 12:00 AM
Enoch Lambert, Brigham Young University Physical Sciences Extended-cavity diode lasers are important tools in scientific research. Current extended-cavity diode laser systems will change frequency unpredictably while operating, requiring extensive effort to tune them back to the right frequency. We seek to implement a novel method of extended-cavity diode laser control that adds an extra control system to prevent these unpredictable changes.