2014 Abstracts
Olfactory Processing in the Brain: The Impact of Lateral Glomerular Interactions on Odor Representation
Kyle Hansen, University of Utah Life Sciences Our brain processes physical stimuli from the world around us to shape how we perceive our environment. In the olfactory system, this processing begins with olfactory sensory neurons that relay information about distinct odorants to a region of the brain called the olfactory bulb. Olfactory sensory neurons express the same odorant receptors converge onto structures within the olfactory bulb called glomeruli. Here, we map lateral interactions between glomeruli to better understand how olfactory information from the environment is processed within the olfactory bulb. Using GCaMP6, a fluorescent calcium indicator, in awake mice we can observe optogenetically-evoked patterns of lateral connectivity between glomeruli in the olfactory bulb. The findings from this study will help clarify potential interglomerular connection schemes and provide understanding of how local circuitry in the olfactory bulb transforms the representations of sensory information before it is relayed to higher brain areas.
Multimechanistic combination enhances selenium’s antiproliferative effect in prostate cancer cells
Merrill Christensen, Brigham Young University Life Sciences Selenium (Se) has established chemopreventive efficacy against prostate cancer, the second leading cause of cancer death among men in the US. Currently, most studies only employ one single chemical form of Se, even though different forms of Se act through varied mechanisms to achieve their anticancer effects. In this study, we propose that systematically combining multiple forms of Se will produce an optimal combination of Se compounds to inhibit in vitro prostate cancer cell growth. As proof of principle, we (1) synthesized Se nanoparticles (nano Se), (2) determined the IC50s of methylseleninic acid (MSA), sodium selenite, and nano Se in PC-3 cells, (3) utilized mixture designs and response surface methodology to direct our combination experiments with these three compounds, (4) tested the fifteen combinations determined in the previous step, and (5) constructed a polynomial model to derive the optimum combination of MSA, sodium selenite, and nano Se to inhibit PC-3 cell growth. Our results showed that combining different forms of Se compounds enhanced its chemopreventive effect. Future studies will expand the use of three Se-containing compounds to four and demonstrate similar effects in xenograft mice.
Do Canyon Tree Frogs in Zion National Park Possess a Mechanism to Defend Against Chytrid?
Chelsea Moody, Dixie State University Life Sciences A relatively new pathogen, chytrid fungus, has been a major cause of decline in amphibians worldwide. This pathogen has been found on Canyon Tree Frogs in Zion National Park. Earlier data suggested that chytrid did not affect populations of Canyon Tree Frogs in Zion National Park. We predicted that since the populations weren’t impacted by the presence of the fungus, there must exist a mechanism by which the frogs rid themselves of the infective agent. To test this prediction, we captured and swabbed ten frogs in each of nine canyons in Zion National Park during the summer of 2013. Swabs were sent to the San Diego Zoo to be analyzed for the presence of chytrid DNA. Chytrid infection rates and population sizes were compared with data from previous years. As expected, the data showed that two of the three infected canyons experienced declines in the percentage of frogs testing positive for the fungus. Thus, these frogs must possess a mechanism to survive this pathogen, whereas most amphibians do not. Our results may prove helpful to other biologists seeking to understand how amphibians can survive this pathogen.
Attachment reduction of invasive species with submersible substrates
Eric Swenson, Dixie State University Life Sciences Underwater invasive species such as mussels and algae attach to submersible substrates that are advantageous for growth, and often include recreational boats that are frequently moved from one waterway to another. This can lead to rapid and uncontrolled spread of the invasive species. Through the use of newly developed ionic surfactants, growth and attachment of species on submersible surfaces can be inhibited. New surfactants have been incorporated into the final coating of typical product sealants to prevent the attachment of various marine organisms. By integrating the surfactant into the coating, an increase in the usefulness and longevity of effective inhibition is expected, as compared to commercially available alkali anti-fowling agents that are applied after the sealing process. It is hypothesized that the adherence properties possessed by marine organisms will be compromised by the introduction of ionic surfactants through changes in the chemical makeup of the exposed surfaces. The ultimate goal is to develop a substrate surface in which there is no affinity for attachment and/or causes fatality to the organism. If the desired outcome is reached, the potential benefits that ensue could create drastic improvements in areas of invasive species prevention and management in the desert southwest fresh-water lakes. Additionally, extension of the surfactant application to metal surfaces could have significant impacts on efficiency in water treatment systems, as well as cargo shipping in saltwater environments.
Waterfowl Population Trends, Pariette Wetlands, Utah 1980-2010
David Baird, Utah Sate University Life Sciences We obtained from the Bureau of Land Management (BLM) 30 years of monthly waterfowl population surveys completed at Pariette Wetlands in the Uintah Basin, Utah between 1980 and 2010. The Pariette Wetlands are the largest wetlands managed by the BLM within the lower-48 states and are comprised of 4,033 acres of land. Pariette Wetlands is surrounded by about 6,000 square miles of land where oil and gas production is the major activity. This waterfowl refuge is a significant location for migrating waterfowl species within the Pacific Flyway and provides important summer habitat for resident waterfowl. Our objectives were to determine what the trends were for waterfowl population abundance, occupancy, and species richness.
Nucleosome positioning preferences of octamer containing H2A variants Htas1 and Htz1 in C. elegans
Sharisa Nay, Brigham Young University Life Sciences Gene therapy is a growing field of science with the potential to improve thousands of lives. With an eye toward improving the effectiveness and longevity of gene therapies, my project examines the preferential binding tendencies of the histone protein variants Htz1 and Htas1. Htz1 is the Ceanorhabditis elegans homolog of H2AZ, an important variant of the H2A histone. This protein has been shown as necessary for survival and as playing a role in the prevention of ectopic heterochromatin spread. Htas1 is another variant of H2A that plays a role in the increased transcription of sperm-producing genes. The preferred positioning of these variants on naked DNA is not yet known. Through a DNA extraction, nucleosome reconstitution, and DNA digest and sequencing, we will take these variants and examine where they are prone to localize within the N2 Bristol strain of c. elegans. This will allow us to include DNA sequences on our gene insertions possessing a high binding-affinity for these transcription-promoting histones. Thus, if we can identify the locations at which these variants will localize within DNA, we will be able to insert these preferred constructs into the genes used for gene therapy and thereby increase the effectiveness of gene therapies.
Long-Circulating Backbone-Degradable HPMA Copolymer-Gemcitabine Conjugates for the Treatment of Ovarian Carcinoma
Shwan Javdan, University of Utah Life Sciences Each year in the United States, over 22,000 new cases of ovarian carcinoma are diagnosed and 14,000 women die from its progressive cancer stages. Anthracyclines, a class of common chemotherapy drugs, have long been the primary treatment for this and many other cancers, but they often leave patients with cardiotoxicity, hepatotoxicity, and other adverse effects. Polymer-drug conjugates using poly[N-(2-hydroxypropyl)methacrylamide] (poly-HPMA) are nanosized, water-soluble constructs that accumulate passively in solid tumors by the enhanced permeability and retention effect as well as actively by cell surface targeting methods. As such, they have exhibited reduced toxicity in the body. The goal of this study was to develop a novel, targeted HPMA copolymer-drug conjugate for the treatment of ovarian carcinoma. To accomplish this, an antibody fragment called Fab’, targeted to ovarian carcinoma cell surface antigen OA3, was bound to an HPMA copolymer-gemcitabine conjugate. Gemcitabine is a nucleoside analog used in chemotherapy that has demonstrated considerable effectiveness in recent years. The copolymer-gemcitabine conjugate was successfully developed following the synthesis of all the requisite components, including Fab’, diblock chain-transfer agent (di-CTA), N-(2-(2-pyridyldithio)ethyl)methacrylamide (PDTEMA), and polymerizable backbone-degradable gemcitabine derivative. Syntheses of di-CTA and PDTEMA were optimized and then characterized by high-performance liquid chromatography, H-NMR, and mass spectrometry. Monomers were combined by reversible addition-fragmentation chain-transfer polymerization, and then the Fab’ fragment was bound to the polymer backbone via a disulfide exchange reaction with PDTEMA. The targeted copolymer-drug conjugate was then verified by fast-protein liquid chromatography as well as ultraviolet-visible spectroscopy. A number of in vitro tests have demonstrated the properties of an efficient drug delivery system. Flow cytometry displayed active accumulation of the copolymer-gemcitabine conjugate to OVCAR3 cell surfaces. Furthermore, IC50 measurement found promising drug efficacy comparable to modern anthracyclines. Future work will involve in vivo evaluation of the conjugate’s therapeutic efficacy in nude mice bearing OVCAR3-xenografts.
Physiologically Relevant Oxy-Radical Formation of Neuromelanin by Photostimulation: Effects of Iron and Calcium
Whitney Badal, Brigham Young University Life Sciences Light therapy has been utilized to treat alcoholism and opiate-dependent rats as well as ameliorating symptoms of Parkinson’s disease. As both addiction and Parkinson’s Disease (PD) are often associated with decreased dopamine transmission in the striatum, it is likely that light therapy is able to increase dopamine release. A similar technique called near-infrared light treatment has also been shown to be effective in mice in restoring the function of dopamine cells in the substantia nigra pars compacta (an area associated with PD). A possible explanation for this is that light catalyzes the formation of neuromelanin. It is likely that neuromelanin is a neuroprotective cellular agent that is able to reduce damage caused by reactive oxygen species. Using UV-IR spectrophotometry, we show that in the presence of photostimulation, dopamine (0.3-30 uM) oxidizes and polymerizes into neuromelanin. Since hydrogen peroxide catalyzes this formation of neuromelanin, it is likely that this is a radical-polymerization reaction, suggesting that neuromelanin may be a radical scavenger. Additionally, the presence of the selective iron chelator desferrioxamine, the calcium chelator EGTA, or lack of calcium in the artificial cerebral spinal fluid markedly reduces the formation of neuromelanin. Using fast scan cyclic voltammetry in mouse horizontal and/or coronal brain slices, dopamine release in the nucleus accumbens core was enhanced by light exposure, in particular UV and short-wavelength visible light. These findings indicate that both iron and calcium are necessary for melanization in neural tissues and that light-induced melanization enhances dopamine release, suggesting a physiological role for melanization in synaptic transmission.
Insights into the evolution of wings in Insects: Molecular Phylogenetics of Baetidae (Ephemeroptera)
Chase Barker, Utah Valley University Life Sciences Central Research Question: Phylogenetic relationships of mayflies are still not very well known, however molecular and morphological data have begun to shed light on the relationships of these insects (Ogden et al. 2009). Our central question is to elucidate the phylogenetic relationships within the mayfly family Baetidae.
Interaction of fungal endophytes and gall-forming aphids on cottonwood trees
Julia Hull, Weber State University Life Sciences Endophytes are fungi that live within aerial portions of plants for most or all of their life cycle without causing visible signs of disease. Gall forming aphids, Pemphigus betae, are highly competitive over gall site selection (Moran 1993), forming galls on the leaves of narrowleaf cottonwood and their hybrids. The favored gall location overlaps with areas of highest endophyte probability. I hypothesized that a negative correlation would exist between endophyte infection and aphid galling on leaves of backcross hybrid cottonwood trees.
Nitrogen content in lichens as an indicator of inversion-based deposition
Brianne Palmer, Utah State University Life Sciences Inversions have plagued the valleys in Utah resulting in built up pollution carpeting the cities and spreading into surrounding ecosystems. The ecological impact of these inversions is unknown. Inversion-based pollution events deposit nutrients and pollutants in the ecosystems. The purpose of this study is to determine if lichens, due to their unique physiology, preserve a record of inversion-based nitrogen deposition in order to assess the ecological impact of the inversions. In June and July of 2013 we collected 111 samples of lichens from sites exposed to the inversions, along Red Butte Creek and on an elevation gradient on Grandeur Peak in Salt Lake City. The collection focused on two species of lichens (Xanthomendoza montana and Xanthomendoza fallax) because they are easily identifiable and live in all the sampling sites. The samples were ground, run through a stable-isotope mass spectrometer and analyzed for the %N and δ15N. If lichens hold a record of inversion-based depositions there should be more nitrogen in lichens from the sampling sites closer to the pollution source (Salt Lake City). Once the data was complied, the resulting graphs showed no correlation between %N and distance from Salt Lake City between δ15N and the pollutant source. However, the isotopic variability within the samples was greater than expected and requires further research.
Cloning and Expression of β-caryophyllene synthase from Ericameria linearifolia
Preston Manwill, Southern Utah University Life Sciences Plants produce compounds, secondary metabolites, which can be harnessed for medicinal uses. Caryophyllene, a secondary metabolite produced by a variety of higher plants, has shown promise as an analgesic and anti-inflammatory. Caryophyllene synthase is the final enzyme in the biosynthetic pathway that produces caryophyllene. The gene and enzyme responsible for caryophyllene production have been observed in crop plants and model organisms, but few studies have investigated caryophyllene production in indigenous plants. We investigated the production of caryophyllene in Ericameria linearifolia (Narrowleaf goldenbush) because it is a shrub native to southwest North America. The first portion of this research examined sequence similarities between caryophyllene synthase gene orthologs in E. linearifolia and other plant genera. Genomic DNA was isolated from E. linearifolia leaves collected from plants growing in southern Utah. Literature reviews and database inquiries have provided DNA sequences for similar synthases, from which primers will be designed to copy and sequence the E. linearifolia caryophyllene synthase gene, confirming the orthologs presence. Following confirmation of the gene, mRNA will be extracted from leaf material and oligo(dT) primers used to synthesize cDNA. Subsequent cDNA amplification and cloning of products into a vector will allow for transformation into a protein-producing bacterium. These final steps make the downstream procedures of protein production, structure determination, and functional characterization of the protein possible. Comparison with enzymes that produce similar organic compounds may result as well, and would provide insight that could improve the biosynthesis of medicinal compounds.
Antimicrobial Properties and Composition of Essential Oil Isolated from Ericameria linearifolia (Asteraceae)
Preston Manwill, Sourthern Utah University Life Sciences Plants produce myriad secondary metabolites (essential oil) that play a role in ecological interactions. Species evolve unique mixtures of organic compounds due to strong selective pressures that act on metabolic pathways. Few studies have investigated the antimicrobial properties of secondary metabolites that evolved against soil microbes associated with native plants. The essential oil of Mojave goldenbush (Ericameria linearifolia), a shrub native to the Intermountain West, was characterized and its bacteriostatic abilities against root associated and non-root associated bacteria morphs were examined in this study. We hypothesized E. linearifolia oil would act as a greater growth inhibitor against native soil bacteria with which it has evolved than against bacteria from non-associated soils. Secondary metabolites were extracted using steam distillation and analyzed with gas chromatography mass spectroscopy. A Kirby-Bauer assay tested presence, size and retention of inhibition zones (IZ) produced against soil bacteria. The essential oil of E. linearifolia contained twenty secondary metabolites, two of which, limonene and sabinene, constituted greater than fifty percent of the oil. Presence and retention of IZ produced by E. linearifolia metabolites varied significantly by community association and bacteria morph. The hypothesis was supported by IZ that were largest against bacteria cultures isolated from soil that surrounded Mojave goldenbush roots and least effective against cultures isolated from non-root associated soil. Our findings suggest that secondary metabolites of E. linearifolia have evolved to specifically prevent negative interactions with bacteria most associated with the plant.
Identification of the Critical Functional Region of the Recombination Directionality Factor Protein of B4 Mycobacteriophage Via Genome Annotation and Comparative Genomics
Cameron Sargent, Brigham Young University Life Sciences Although viruses present a potential solution for treating and studying many harmful diseases, they have yet to be utilized successfully, largely due to an overall lack of understanding of the interactions between viruses and their hosts. This study, however, demonstrates the efficacious usage of comparative genomics in further elucidating viral reproduction mechanisms, a step in overcoming this hurdle. Following the sequencing and annotation of genomes of the B4 subcluster of mycobacteriophage, a previously unstudied selection of viruses, comparative genomics analysis identified regions of proteins from these viruses that are highly conserved, or highly similar. One of these B4 phage proteins was then compared on the basis of its predicted folded structure and its amino acid composition to a protein with the same function from another phage, whose structure and DNA binding mechanism was determined via NMR spectrometry. Gene sequence alignments identified the region of highest conservation in the B4 phage. Protein folding then revealed that this region created a structure that was analogous to the functional region of the protein studied elsewhere, indicating that it too recognizes, binds to, and modifies DNA in the same manner. Furthermore, another DNA-binding motif with high conservation among B4 phage was observed in both the folded B4 proteins and the protein analyzed via NMR spectrometry. This comparison procedure not only further elucidated the function of an important gene in B4 phage but also displayed that comparative genomics, a resource-effective and computer-based approach, can successfully identify the critical functional regions of a protein. This study therefore provides a novel procedure for further understanding the mechanisms of virus-host interactions, which in turn facilitates the successful application of viruses in treating and studying diseases.
Ethanol Inhibits Dopamine Release at Terminals in the Nucleus Accumbens Via GABA Receptors
Eliza Warren, Brigham Young University Life Sciences We have previously demonstrated that ethanol inhibition of medium spiny neurons (MSNs) in the nucleus accumbens (NAc), and γ-aminobutyric acid (GABA) neurons in other ethanol-sensitive brain areas, is mediated by GABA(B) receptors. The aim of this study was to evaluate the involvement of GABA and glutamate (GLU), and in particular GABA(A), GABA(B) and NMDA receptors, in mediating ethanol inhibition of dopamine (DA) release in the NAc. Using fast scan cyclic voltammetry (FSCV), we evaluated the effects of ethanol on DA release in the NAc core of C57/BL6 and CD-1 mice. In the slice preparation, local stimulation evoked robust, frequency-dependent DA release in the NAc, with maximal release at 20 Hz. Ethanol decreased DA release with an IC50 of 60 mM in C57Bl6 mice. In anesthetized C57BL6 mice, ethanol decreased DA release with an IC50 of 2.0 g/kg. Superfusion of the GABA(B) receptor antagonist CGP55845 enhanced DA release 85%, while neither the GABA(A) receptor antagonist bicuculline, the GABA(A) receptor agonist muscimol, the GABA(B) receptor agonist baclofen, nor the NMDA GLU antagonist APV significantly affected DA release. CGP55845 blocked ethanol inhibition of DA release, while neither bicuculline nor APV altered ethanol’s effects. GABA inhibited DA release at 0.5-10 uM but not at 0.1-1 mM. Compared to ethanol effects on DA release in C57BL6 mice, CD-1 GAD GFP knock-in mice, which only express GAD at 50% levels, were significantly less sensitive to ethanol. As DA release was sensitive to low concentrations of GABA, CGP55845 may act as a GABA(A) rho receptor antagonist, and neither bicuculline nor baclofen had any effect on DA release, ethanol may be acting on extrasynaptic GABA(A) rho receptors on DA terminals to inhibit DA release in the NAc.
Suppresion of lymphangiogenesis using vegf-c trap
Ryan Watkins, Univeristy of Utah Life Sciences The lymphatic system is responsible for controlling systemic fluid buildup. Lymphangiogenesis is a dynamic process involving sprouting and maintaining new lymphatic vasculature. Vascular endothelial growth factor C (VEGF-C) is known as a key growth factor through VEGF receptor 2 and 3 (VEGFR2 and VEGFR3). Interestingly, the cornea expresses VEGF-C but is alymphatic. We found that the soluble isoform of VEGFR3, which lacks tyrosine kinase domains, is responsible for the alymphatic nature of the cornea by sequestering endogenous VEGF-C. Although soluble VEGFR3 or soluble VEGFR2 can be useful for inhibition of VEGF-C derived lymphangiogenesis, they also bind VEGF-A. Inhibition of VEGF-A suppresses blood vessel formation, damaging tissue and creating additional side effects. The development of a new anti-lymphangiogenic drug, that only blocks VEGF-C, has many implications: preventing tumor metastasis and reducing rejection rates of tissue and organ transplants. VEGF-C mainly binds to VEGFR3 domain 2 and VEGFR2 domain 3. To develop an anti-lymphangiogenic drug that specifically binds VEGF-C the binding domains were inserted into a vector that produces a recombinant protein (VEGF-C trap) that sequesters VEGF-C, suppressing lymphangiogenesis. Mice in a cornea transplantation model were treated with VEGF-C trap. After 8 weeks, 60% of the treated cornea survived (no rejection) compared to 10% in the empty vector control group. A 60% transplant survival rate is one of the highest rates compared to other single treatment methods. Blood and lymph vessel area was calculated and showed a decrease in lymph vasculature but not blood vessel. Suggesting only VEGF-C activity was affected. In a tumor metastasis model, nude mice will be injected subcutaneously with cultured MCF-7 cells which have been transfected with VEGF-C trap or an empty vector. We expect to see a decrease of lymphatic vasculature in the mice injected with MCF-7 cells containing the VEGF-C trap and ultimately less metastasis.
Leech Population Genetics in Southern Utah
Kevin Nay, Southern Utah University Life Sciences Leech taxonomy has traditionally been based on morphological characters, but with new developments in DNA technology many taxonomists are starting to use genetic information in descriptions of new species. Leeches in southern Utah are poorly inventoried with respect to many other aquatic animals. There have been few morphological inventories of leeches and even fewer descriptions of the genetic diversity within leeches. Landscape genetics is a powerful tool used to understand geographic patterns of genetic diversity. Southern Utah has many naturally isolated bodies of water due to the climate and the dramatic changes in elevation in this part of the country. The landscape genetic study of leeches in southern Utah will provide us with a better understanding of genetic differentiation within southern Utah leeches. The mitochondrial DNA (CO I region) will be used to estimate genetic diversity and examine the relationships among individuals in two populations of leeches. I hypothesize that leeches in southern Utah will have greater genetic diversity then historically recognized from morphological studies suggesting a new species of leech. The study will lead to better understanding of the taxonomy and identification of southern Utah leeches.
Antimicrobial Properties of Hydrosols Isolated from Anthoxanthum (Poaceae) Against Soil Bacteria
Preston Manwill, Southern Utah University Life Sciences Members of Anthoxanthum (sweetgrass) have a history of ceremonial and medicinal use. Coumarin, a secondary metabolite produced by the grass, is an anticoagulant and antimicrobial agent. Antimicrobial properties of commercially available European A. odoratum metabolites have been nominally investigated, but no North American species have been studied. Additionally, European sweetgrass is purported to be available in both diploid and polyploid strains. Our research objectives were to: 1) determine if ploidy level strains do exist, and 2) investigate secondary metabolite production and evolution in commercial strains and A. hirtum, a Great Basin native. Using epidermal casts and fuschin staining, differences in guard cells and nuclei were surveyed. Secondary metabolites from the A. odoratum strains and A. hirtum were obtained through steam distillation and a vacufugation protocol that concentrated hydrosols. GC/MS analyses characterized and quantified secondary metabolites. The secondary metabolites coumarin, dihydrobenzofuron, and dihydroactinidiolide were identified, with the first and latter greatest in A. hirtum. Significant guard cell differences between strains, as well as species, were observed. Two ploidy strains of A. odoratum were suggested. A Kirby-Bauer assay tested presence, size and retention of inhibition zones (IZ) produced against soil bacteria. Gram-staining initially characterized bacterial morphs. Secondary metabolites from the diploid strain were most effective against all bacterial morphs, but polyploid metabolites also generated and retained IZ against diploid root associated and non-root associated morphs. The native sweetgrass produced IZ only against root associated bacteria with which it had evolved. Future work will include similar studies of other North American Anthoxanthum species.
Killing of intracellular Mycobacterium ulcerans by mycobacterial phage cocktail using avirulent Mycobacterium smegmaits as a vector
Justen Despain, Brigham Young University Life Sciences Mycobacterium ulcerans is an acid fast intracellular bacteria that is the causative agent of Buruli Ulcer, a disease endemic in tropical regions of Africa. The disease starts as a nodule that progresses into a necrotizing skin lesion. Treatment ranges from antibiotic therapy to surgical removal of surrounding skin to stop necrotization of the skin. Owing to the intracellular nature of M. ulcerans, antibiotic therapy can be an ineffective treatment option. It has been previously shown that mycobacteriophage can reduce extracellular bacterial load in mice infected with M. ulcerans. In this study, we propose a method of killing intracellular M. ulcerans by mycobacteriophage using avirulent Mycobacterium smegmaits as a vector.
Results of Interventions to Fight Anemia in Children in an Impoverished Ecuador Community
Charity Anne Rowley, Brigham Young University Health Background: Since 2009 groups of professors and students from the College of Nursing have been traveling to Guayaquil, Ecuador and assessing anemia rates and nutrition among the school children there. The adverse effects of anemia can include: weakness, fatigue, shortness of breath, and poor concentration. Initial anemia rates were discovered ranging 30-50%.
Religiosity and Family Hardiness in Parents Raising a Child with a Disability
Brittni Carr, Brigham Young University Health Purpose/Aims: To examine religiosity and family hardiness in parents raising children with disabilities (CWD) to determine if there are differences according to parent gender and type of disability and if there is a relationship between the variables.
Asthma and Omega-3 Fatty Acids
Matthew Mogensen, Southern Utah University Health The anti-inflammatory effects of omega-3 fatty acids (n-3) and their possible role in the regulation of asthma are promising for those suffering from the disease. Omega-3 fatty acids have been linked to the reduction of eicosanoids, which are signaling molecules that regulate the inflammatory response. Inflammation in the respiratory system is one of the most widespread symptoms of asthma and therefore poses the most risk to asthmatic individuals. This two phase study will test the effectiveness of n-3 in individuals with varying severities of asthma. In both stages of this study, a placebo or n-3 in the form of a krill oil capsule containing the omega-3 fatty acids eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) will be administered, lung volumes and capacities will be measured weekly, and the frequency/severity of asthma attacks will be recorded. Phase one of the study will test whether n-3 reduces asthma symptoms with no activity modifications, while phase two will test whether n-3 is effective in reducing asthma symptoms associated with exercise. The two phases of the study will be separated in order to isolate the duration of n-3 ingestion as a variable in the experiment. As this is an ongoing experiment, results are not yet available. However, if n-3 is effective, we expect to see an increase in lung volume and a decrease in the frequency and severity of asthma attacks in individuals. These results would suggest that n-3 could be an effective and simple treatment that, when taken daily, could reduce the frequency/severity of asthma attacks and help improve quality of life for asthma sufferers.
Reproducibility of High-Frequency Ultrasonic Signals in Breast Cancer Detection
Andrew Mackay Breivik, Utah Valley University Health The central research question of this project is to determine the reproducibility of high frequency (HF) ultrasonic signals in breast cancer detection. Previous studies on surgical specimens of breast tissue have shown that HF ultrasound (20-80 MHz) appears sensitive to a range of breast pathologies including fibroadenomas, atypical ductal hyperplasia, fibrocystic changes, and carcinomas. A measurement in the ultrasonic signal called the peak density appears most sensitive to the pathology of the breast. The reproducibility of this parameter has not been quantitatively measured in a comprehensive manner. In parallel to a clinical study being conducted at the Huntsman Cancer Institute, we are conducting a laboratory study of the reproducibility of these measurements using chicken and bovine tissue. The ability to reliably determine the pathology of breast tissue with a real-time intra-operative tool would greatly aid in the surgical removal of all malignant tissue, as well as greatly reduce the occurrences of repeat surgeries to remove margins of cancerous tissue that remained. The results of this study will reveal the degree of variability in the signals, thus supplementing previous studies as well as determining the reliability of the results from the current clinical study. The research methodology included the following. Fresh chicken breast and bovine tissue were cut into 4x3x0.5 cm and 4x3x1.5 cm cubes. The tissue was tested at room temperature (23.4oC) using HF ultrasound. Pitch-catch and pulse-echo waveforms were obtained in triplicate measurements of two types: Three measurements with the transducer not leaving the tissue, and three measurements with the transducer lifted off the tissue between measurements. A total of 640 measurements were acquired and analyzed to obtain the spectral peak densities. Preliminary results indicate that the measurements are reproducible to a statistically significant level, thus removing one possible source of uncertainty in the data.
Empathy in Nursing Students: the Impact of a Poverty Simulation
Kristen Hamblin, Brigham Young University Health Empathy is an essential characteristic in nursing. In fact, the skill of empathy, the ability to understand the feelings or situation of another, is of paramount importance to the nurse-patient relationship. Additionally, empathetic interactions often lead to increased patient satisfaction, compliance, and overall quality of life.
Social Cognitive Predictors of Residential Radon Testing and Mitigation
Siena Davis, Brigham Young University Health In the U.S., exposure to radon gas (222Rn) is the second leading cause of lung cancer after tobacco smoke. 222Rn is a naturally occurring environmental carcinogen produced during the radioactive decay of uranium-238, which is found in many soils throughout the U.S. Because 222Rn is a gas, it has the ability to travel through the soil and into homes through cracks in foundation walls. Inhaled 222Rn has the potential to emit alpha radiation in the lungs, and long-term exposure is responsible for approximately 21,000 lung cancer deaths per year in the U.S. 222Rn is a colorless, odorless, and tasteless gas, so the only way to know it is in a home is to test for it. Studies show that even in areas with high radon levels, homeowners frequently do not test or mitigate their homes as recommended. This study aims to understand the psychosocial factors that influence whether Utah residents perform radon testing and mitigation. Radon-related lung cancer deaths would be significantly reduced if the psychosocial factors that influence radon testing and mitigation were better understood and used to design and implement effective interventions. To understand the psychosocial factors that influence radon testing, we will survey residents (n = 50) of the county who come to UCHD specifically to purchase a radon test kit. The survey will be based on social cognitive theory (SCT) constructs. We will administer the same survey to a comparison group (n = 50). The comparison group for the study will be individuals who visit UCHD’s office of vital records. Individuals from the study group with indoor radon levels above 4 pCi/L will be contacted by telephone 30 – 60 days after testing to complete a second survey. This survey will measure SCT factors that influence participants’ actions to reduce radon levels in their home.
High-frequency ultrasound study of tissue margins from breast conservation surgery: Preliminary results
Teresa Wilson, Utah Valley University Health A critical issue in breast conservation surgery (lumpectomy) for breast cancer treatment is ensuring the tissue surrounding the excised tumor, the margins, are cancer-free. In collaboration with the Huntsman Cancer Institute at the University of Utah, students from Utah Valley University are using high-frequency (HF) ultrasound to test the pathology of lumpectomy surgical margins. This pre-clinical study is a blind study which will involve 80 patients, approximately 320 specimens, and use traditional pathology as the “gold standard” for measuring the HF ultrasound method’s accuracy. Ultrasonic waveforms of margins were acquired at the Huntsman Cancer Hospital in pitch-catch and pulse-echo modes using 50-MHz, 6.35-mm diameter transducers. The data were analyzed to obtain ultrasonic parameters such as wavespeed, attenuation, specimen thickness and spectral peak density (the number of peaks and valleys in a HF ultrasonic spectral band). The objective of this paper is to search for trends in the data acquired to date to provide an assessment of reliability, stability, and robustness of the study.
Female Collegiate Athletes and Body Image
Ashley Ostler, Southern Utah University Health Research indicates that collegiate athletes may be at risk of developing disordered eating and other distorted behavioral patterns. This may be due, in part, to the aesthetic and performance demands of their sports. The purpose of this study is to discover if female athletes acquire increased negative views towards their body image and food due to the pressures of being a collegiate athlete at Southern Utah University (SUU). An anonymous survey was given to approximately 150 female athletes participating in a variety of sports inquiring about body perception and eating behaviors relative to their sport. The survey evaluates the athlete’s attitude toward food, their relationship with food, if there are outside influences that affect how they eat, and if they are satisfied with their weight. Athletic teams were chosen based on meeting two of the three following requirements: tryouts are held, scholarships are offered, and there are regular competitions or performances. Athletic teams involved in the survey include tennis, volleyball, track & field, cross country, softball, basketball, gymnastics, soccer, drill team, ballroom dance and cheer. The data will provide information regarding Southern Utah University female athlete’s body perceptions and eating behaviors. Results will be compared to a similar study conducted five years ago at SUU.
Gait Comparison Between Right and Left Legs on Below the Knee Amputees
Taylor Colvin, Utah Valley University Health Introduction: There are millions of people in need of prosthetics worldwide and only a very small percentage currently have access to appropriate prosthetic care. As amputees are unable to afford a prosthetic, they are often incapable of maintaining many social interactions and provide for their basic needs. Utah Valley University’s Mobility Mission traveled to Guatemala to manufacture prosthetic limbs for those individuals in need. Our research can also encourage manufacturers to continue developing a better affordable prosthetic that can be donated to those amputees in need to restore quality of life to those individuals.
Identifying Medical Practices and Needed Supplies in Central America
Josh Lee, Dixie State University Health According to the World Health Organization (2012), health care systems in Central America rank in the top 50% of the 190 ranked countries in the world, yet thousands of people are in need of simple medical attention and supplies every day in these areas. Countries such as Honduras lack virtually all access to health services, with 83% of the country’s population without health insurance, and 30% with no health care access at all (Pearson et al., 2012). To address this issue, a 2013 Dixie State University study conducted by the author, an Integrated Studies major with disciplinary emphases in Spanish and Biology, interviewed fifty adult Central American immigrants at a Southern Utah health care facility with the aim to providing student groups embarking on health service projects a researched list of vitally needed medical supplies. Participants in the study were asked to provide information regarding their health care experiences in their countries of origin and draw upon their comparative experiences with health care in the United States in order to determine areas of need. The forty individuals in this study represented a total of seven Central American countries and the interviews were conducted in Spanish and translated into English. The interviews were conducted over an 8-week period of time and results suggested that diabetes, cold, flu, antibiotics, and anti diarrhea medicines and supplies are a few of the needed health care items in these neighboring countries. Although statistical significance was not a feature of this study due to the number of participants, significant consistencies in responses by former residents of a variety of Central American countries suggested that some medical needs are regionally shared and that larger scale follow-up studies may reliably identify these as key resources for student medical delegations traveling to Central America.
Learning Hand-to-Mouth Movements via Triaxial Accelerometers
Stephen Clarkson, Brigham Young University Health While there is an abundance of mobile health apps for weight management on the market today, almost all focus entirely on net caloric intake (exercise minus calories consumed). Recording daily caloric intake can be cumbersome, inefficient and inaccurate. One rising suggestion in the health field for reaching weight goals is objectively recording hand-to-mouth movements (HTMMs) during meals throughout the day. This method focuses entirely on portion control and if any improvements are to be made in this area, an effective method of activity recognition must be developed. In this paper, we report our efforts to classify HTMMs and non-HTMMs in an effort to automate counting the number of HTMMs during meals throughout the day. We also report on the performance of several base-level classifiers such as k-NN, Naive Bayes and Decision Trees as well as meta-level classifiers (Voting, Bagging and Boosting).
Assessment of Gait with Zero Drop Shoes While Walking
McKay Frandsen, Utah Valley University Health INTRODUCTION
The Influence of Charge Nurses on Patient Safety
Charity Anne Rowley, Brigham Young University Health In 2010, The Office of the Inspector General of the U.S. Department of Health and Human Services reported that adverse events during hospitalization contribute to the deaths of 180,000 patients each year! The purpose of this study is to improve patient safety in the hospital by understanding the role of the charge nurse(the 24/7 nursing supervisor in hospital units).
Rural School Employees and Vaccinations
Jennifer Orton, Brigham Young University Health In contrast to the success of America’s vaccination rates among children, adult vaccination rates remain suboptimal. Some adults, such as school employees, are in a position where they can easily contract and spread vaccine-preventable communicable diseases, yet mandatory vaccinations are usually lacking in this population. Schools may easily become communicable disease outbreak centers, especially for highly contagious diseases such as measles and influenza. The purpose of this study was to evaluate why rural Utah school employees remain vaccinated for measles and influenza, as well as to discover the perceptions of these school employees regarding mandatory vaccination policies. Of the 835 respondents, 71.7% reported they received the measles vaccination as a child, although only 26.9% reported having a measles booster vaccine as an adult. When asked why they had not received the measles booster, 46% of participants stated they were unsure if they needed one. Other participants also reported lack of an adult measles booster vaccine because it was not required by the school district (5%) and that they did not perceive the need because they were healthy (5%). Even more concerning, over half of the school employees (51%) had not received their influenza vaccine for the current year. When questioned about their lack of influenza vaccination, 26.4% believed the vaccine was ineffective and 25.4% were noncompliant because they did not have the time to get the vaccination. When questioned about their perceptions regarding mandatory vaccine policies for school employees, four major themes emerged: 1) adults should retain agency; 2) vaccine effectiveness was not guaranteed; 3) adults do not need vaccinations; and 4) cost of vaccines. Further education is needed regarding the need for adult vaccinations, especially among school employees in rural Utah. To control the spread of communicable diseases, school districts may consider mandatory vaccination of school employees.
Subsequent Primary Malignancies in Survivors of Childhood Cancer
Emily Matson, Brigham Young University Health Cancer, despite its common association with old age, is a leading cause of death for children age 1-14, second only to unintentional injuries. Improvements in diagnosis and treatment are increasing childhood cancer survival, and more research is needed on the risk of subsequent cancer following an initial diagnosis, of either the same or another site. Research on associations between childhood and secondary cancers may improve patient follow-up by providing health professionals with information about which subsequent cancers are likely to occur, which screenings to conduct and what symptoms to look for.
Glioma stem cells, hypoxia inducible factor 1 alpha, and brain tumor dynamics
Bradley Weaver, University of Utah Health High-grade gliomas, especially glioblastoma (GBMs, WHO Grade IV), are the most common primary brain tumors in humans. Despite recent advances in molecular targeted therapies for cancer, there has been little progress in treatment of GBMs. Median patient survival after diagnosis is dismal: approximately 12 months. Hypoxia is a key clinical marker of GBMs, which contain pockets of necrotic and hypoxic regions within the solid tumor mass. The transcription factors in the Hypoxia Inducible Factor (HIF) family are the master regulators of the cellular response to hypoxia. Their downstream targets include compounds that promote angiogenesis, increase glycolysis, and inhibit apoptosis. Recent research has identified glioma stem cells (GSCs) surviving within the hypoxic microenvironment, and has implicated HIF1α as a potential regulator of the GSC phenotype. GSCs are thought to promote therapeutic resistance and recurrence of GBMs after surgical resection. Clarifying the role of HIF1α in glioma stem cell dynamics is important for targeting both the tumor cells and their environment in new treatment. It is expected that GSC populations with more aggressive phenotypes will express higher levels of HIF1α and have higher proliferation rates under acute hypoxia. In this study, the HIF1α levels and proliferation dynamics of multiple, unique GSC cell lines are investigated. Cell lines used include two GSC lines isolated from primary patient tumors (NSC20/23) and a stem cell enriched high-grade glioma line. Preliminary results suggest that not all populations of GSCs respond the same way to hypoxic stress, and HIF1α may play a central role in stem cell dynamics, but not in the growth of non-stem tumor cells. Probing further into this relationship will increase our understanding of how brain tumors behave, and how to more effectively target them in patients. Further data and conclusions from this project will be available at the time of presentation.
Quantitative assay of neovascularization using high-frequency ultrasonic spectroscopy
Andrea Quiroz, Utah Valley University Health The stimulation and inhibition of tissue vascularization has important applications to tissue engineering and oncology. Approaches to quantitatively evaluate neovascularization in vivo in adult animals with differentiated tissue include both invasive methods that use an implanted or injury-induced matrix in the study organism, or noninvasive small animal imaging methods such as MRI, CT, and PET. The objective of this study was to determine if ultrasonic spectra in the 10-100 MHz range could be used as an in vivo neovascularization assay. Numerical simulations and phantoms were used as model systems to test the feasibility of the approach. The simulations modeled ultrasonic scattering from microscopic vascular networks using randomly oriented cylinders to represent blood vessels and cylindrical wave functions to represent ultrasonic waves. Phantoms were fabricated from a gelatin-soluble fiber mixture and agarose gel. The agarose gel was embedded in the gelatin-fiber in order to simulate vascular tissue. Ultrasonic tests were performed using two broadband ultrasonic transducers centered at 50 MHz. Pitch-catch data were collected and analyzed by calculating the peak density of the ultrasonic frequency spectrum, which is the number of peaks and valleys in the spectrum (a measure of the spectrum’s complexity). Control specimens were tested to determine the differences in the sound wave properties between the gelatin-fiber and the agarose gel. The controls demonstrated the instrument’s ability to differentiate between the two types of material. Measurements of agarose inclusions in the gelatin-fiber showed a significantly higher peak density than those for the control gelatin-fiber. These results indicate that the agarose gel structures are scattering sound to a greater extent than the gelatin-fiber alone. The results thus far have provided a strategy for proceeding with the project in the future. The phantoms will be refined and made more realistic to produce an adequate mimic for vascular tissue.
Screening for Anemia in Children of Rural India
Elise Corbett, Brigham Young University Health Background
The Effects of Social Intervention on Mortality: A Meta-analysis
Tim Smith, Brigham Young University Health Previous research studies have confirmed that life-threatening illness adversely impacts psychosocial well-being, from feelings of isolation and embarrassment to the onset of psychotic episodes and suicidality. To help patients cope with chronic and/or terminal symptoms, many healthcare providers advocate the benefits of social support groups as a palliative measure, such as weekly meetings of cancer patients. The rapid proliferation of such programs, as well as associated “survivor groups,” has attracted research attention, and the number of research studies on the topic is now substantial. The field would currently benefit from a quantitative synthesis of the extant findings. To systematically quantify the effect of such intervention groups on mortality (i.e., death rates), we undertook a meta-analysis of the research literature, comparing patient survival rates as a function of social interventions. Across 27 studies examined thus far, we encountered a surprising variability of intervention success in prolonging life. Although most intervention provided demonstrated evidence of increased survival rates among participants, several studies did not. Our presentation will discuss the implications of our findings for healthcare providers and pose questions that will need to be addressed in future research.
Effects of Formalin Fixation on High-Frequency Ultrasonic Measurements of Biological Tissue
Rhett Thomson, Utah Valley University Health Previous studies have shown high-frequency (HF) ultrasound may be sufficiently sensitive to detect and differentiate between both the histopathology and molecular subtypes of breast cancer. The goal of this study was to test the boundaries of HF ultrasonic testing methods. The parameter of interest was the effect of formalin fixation on tissue samples. Formalin has been found to stiffen tissues. Since ultrasound is sensitive to histological properties such as stiffness and adhesion factors, stiffening caused by fixation may compromise the results of the HF ultrasound analysis. This study monitored potential changes to HF measurements caused by tissue fixation. The fixation solution used was 10% neutral buffered formalin. The same formalin solution is used by hospitals after breast conserving surgery (BCS) to prepare and preserve excised tissue specimens for pathology. If no change in HF ultrasound analysis is detected in tissue samples before or after fixation, prepared tissue specimens from BCS patients may be used as viable samples for HF ultrasonic testing. Twenty tissue samples were used in this study. All samples were excised from the cortex, medulla, or ureter of a fresh cow kidney. Samples were tested with HF ultrasound. Testing conditions and procedures were identical to previous breast cancer tests. HF ultrasonic testing was completed at the zero hour mark and then repeated at five successive time intervals during fixation. Data collected from each sample was compared across all time intervals to detect any changes caused by fixation. Analysis of the data showed no significant changes in HF readings before, during, or after fixation up to 17 hours. Any variations observed were within experimental error. These findings demonstrate that formalin fixation does not affect the accuracy of HF ultrasonic testing techniques on bovine tissue samples. To reinforce the findings, this study will be repeated using different types of tissues.
Effects of Environmental Pollutants on Endophytes in Rumex crispus
Yonic Michaca, Utah Valley University Physical Sciences It is well known that some of the worst air pollution in the country each winter is found along the Wasatch front in northern Utah. This study examines the effects of environmental pollutants on the production of the novel compounds produced by the endophytes found in Rumex crispus. The Rumex crispus plant was selected due to its natural medicinal uses. It is anticipated that environmental pollutants have an effect on the production of bioactive compounds in order to protect their plant host from foreign pathogens. The theory is that the more stressful environment a plant lives in, i.e. desert climates, high altitude, and man-induced stresses such as pollution, the more bioactive compounds the endophytes produce as a response to protect their plant host. This study analyzes the effects of environmental pollutants along the Wasatch front on the production of novel bioactive compounds produced by the endophytes found in Rumex crispus. Plant samples are also collected from sites near the Wasatch front, but they are not exposed to the same amount of air pollution to be used as a control.
Catalysis of the Reduction of Sodium Borohydride with Microenvironments of Gold Nanoparticles
Frederickk Sudbury, University of Utah Physical Sciences Triphenylphosphine stabilized gold nanoparticles were synthesized using a method developed previously by the Jennifer Shumaker-Parry group. Aminated silica colloids were obtained from the Ilya Zharov group. The gold nanoparticles were adhered to the silica colloids using a method developed for another purpose by the Zharov group. The presence of the particles on the silica colloids was confirmed using both scanning and transmission electron microscopy. The catalytic activity of the gold nanoparticles both with and without adhesion was investigated. It was found that free nanoparticles had significant catalytic activity, in agreement with previous research. Gold nanoparticles attached to silica colloids do not seem to exhibit the same level of catalytic activity as the free particles. It was also found that not all the gold nanoparticles adhered to the surface of the silica particles. Experiments were conducted to determine if there was a critical concentration of silica colloids that would allow for high levels of adhesion of the gold nanoparticles. It was found that only by adding a significant excess of silica colloids to the solution can all the gold nanoparticles be removed from the solution. It was also found that the silica can be saturated with gold nanoparticles by including a small amount of them in a very concentrated gold nanoparticle solution. Further studies for functionalization of the silica colloids and the ability to physically isolate the silica with gold nanoparticles from free nanoparticles are currently in progress.
Novel Bioactive Compounds Produced by Juniperus osteoperma
Kip Brower, Utah Valley University Physical Sciences Juniperus osteoperma has been reported to exhibit beneficial pharmacological activity against symptoms of diabetes, as a traditional treatment for kidney ailment and the essential oil of juniper berries has also been subject to investigation for antioxidant activities. Endophytes, particularly endophytic fungi, have produced numerous novel bioactive compounds, several of which are currently used as antifungal, anti-bacterial, and anti-cancer agents in organisms other than their plant hosts. This investigation looks into the possibility of endophytic fungi being a means of producing compounds that may be a functioning agent in antioxidant, antifungal, or hyper/hypoglycemic activities of Juniperus osteoperma. The investigation involves samples of Juniperus osteoperma collected from multiple different locations within Utah, and isolates the resident endophytic fungi.
Band gap tunability of protein-based ferrhihydrite nanoparticles
Stephen Erickson, Brigham Young University Physical Sciences “The spherical protein ferritin has often been used to fabricate nanoparticles of various shapes and compositions with its walls. Ferritin occurs naturally with a ferrihydrite (FeOOH) mineral core, but it has also been used to synthesize nanoparticles of several other semiconductors. While the methods for creating these nanoparticles within ferritin are well established, the characterization of such nanoparticles is not. Previous studies on native ferrihydrite core ferritin disagree on the band gap, giving values anywhere from 1.1-3.5 eV, depending on the method. We have used absorption spectroscopy to measure these band gaps with an unprecedented accuracy of up to .01 eV. This method also allowed us to determine that ferrihydrite nanoparticles are indirect gap semiconductors. By employing this method on particles of various sizes, we have shown the effects of quantum confinement, resulting in variations in the band gap. We also provided the first ever direct evidence that ferritin works to crystalize its core with time, an effect that has long been theorized but never observed. By characterizing the effect of size and time on nanoparticle band gap, we have shown the potential for selectively tuning that gap. This opens up a world of possible applications in light harvesting and photo detectors. By controlling the band gap, we will be able to select which wavelengths of light are absorbed, allowing for full spectrum photovoltaic cells and wavelength specific optical detectors. Future studies will focus on nanoparticles of other metal hydroxides and various anion replacements to further expand our tunable range of band gaps.
Exploring Norbornenyl Solvolysis Rates with Electronic Structure Computational Methods
Byron Millet, Weber State University Physical Sciences The relative solvolysis rates of norbornenyl derivatives have been of interest. To date, only one other norbornenyl compound has been found that solvolyzes slower than anti-7-norbornene. It has been suggested that through-space interactions between π-bonds plays a significant role in stabilizing the carbocations. However, through-space interactions do not account for the similar observed solvolysis rates of nearly identical compounds both with and without adjacent π-bonds. Studies have shown that the stability of these compounds is significantly affected by σ-bond interactions. We report on our current computational study of the relative energies of several norbornenyl compounds with and without adjacent π-bonds to evaluate both π-bond and σ-bond effects on the stability of the norbornenyl cations. The effect of a ketone functional group on the relative stability of the carbocation is also analyzed. The literature solvolysis rates of the various norbornenyl derivatives and the stability of their respective cations is compared. With some exceptions, a correlation was found between the stability of a derivative’s carbocation and its respective rate of solvolysis.
Geoelectric and Magnetic Characteristics of Fracture Traces: A Tool for Groundwater Exploration in Igneous Rocks
Jeremiah Rundall, Utah Valley University Physical Sciences Utah Valley University has a long-term program of groundwater development in the Trans-Mexican Volcanic Belt in the state of Guanajuato, Mexico, in cooperation with Choice Humanitarian. Thus far, we have drilled a successful 50-m well in basalt and an unsuccessful 22-m well in rhyolite. Well sites have been chosen based on spring locations and fracture traces (linear features as seen on aerial photos). The objective of this study is to measure and model the geoelectric and magnetic characteristics of fracture traces as a means of determining which fracture traces are most indicative of actual fractured rock. Thus far, studies have been carried out on 20 fracture traces in rhyolite in the Trans-Mexican Volcanic Belt, six fracture traces in rhyolite/diorite/monzonite of the La Sal Intrusives in the La Sal Mountains of Utah, and one fracture trace in rhyolite of the Soldiers Pass Formation west of Utah Lake. The total magnetic field has been measured at about 1-m spacing along profiles perpendicular to fracture traces using the Geometrics G-856 Proton Precession Magnetometer. Geoelectric soundings for resistivity, chargeability and self-potential have been carried out both on and off fracture traces using the Iris Instruments Syscal Junior Resistivity Meter with the Schlumberger array parallel to the fracture trace at spacings in the range AB/2 = 2.29-137 m. Geoelectric profiles have been carried out perpendicular to fracture traces (array parallel to the fracture trace) at spacings AB/2 = 15.2 m and 137 m. Geoelectric and magnetic modeling is being carried out using the 1X2D-GM Magnetic Interpretation Software and the 1X1D Sounding Inversion Software. Preliminary results indicate that some fracture traces are associated with both magnetic and electrical resistivity lows consistent with intermediate depth (~ 50 m) fractured rock, although not all fracture traces have these characteristics. Further results will be reported at the meeting.
General Approach for Engineering Small-Molecule-Binding DNA Split Aptamers
Alexandra Kent, University of Utah Physical Sciences Prescription drug overdose and abuse is a leading cause of death in the United States. It is a serious issue and has become increasingly problematic as opioids are being prescribed at a higher frequency. For this reason, fast, accurate detection of small drug molecules is crucial. The current standard for use in clinical drug detection is an enzyme-linked immunosorbent assay (ELISA) that uses a series of antibodies to bind to the target drug and enable quantification via a colorimetric output. However, the antibodies used in an ELISA often cannot distinguish between similar molecules. Aptamers are short sequences of DNA that have emerged as a promising alternative to antibodies, as they are generated in vitro, where negative selections can be used to increase target selectivity. These aptamers can be cleaved to make split aptamers that only assemble in the presence of the target small molecule. One inherent problem of this system is the need for split aptamers that are selective for their small molecule targets. While there are many known aptamers, there are only a few known split aptamers that bind small molecules. Separating aptamers with a privileged, three-way-junction structure provides a reliable method to generate new split aptamers.
Creation of coherent complex pressure measurements through overlapping scan-based measurements
Jazmin Myres, Brigham Young University Physical Sciences In scan-based array measurements, stationary reference sensors are needed to temporally correlate the different measurement scans and produce coherent complex pressure fields. Because the number of references required increases with the number of subsources contributing to the sound field, an extended, partially correlated source comprising many ill-defined sources can result in significantly increased measurement complexity. A different approach to creating spatiotemporally coherent pressures is demonstrated here. Scan based measurements of a partially coherent line source have been taken in an anechoic chamber. This experimental data has been used to explore “stitching” together a complex pressure field by spatially overlapping measurement scans instead of using separate reference channels. Various methods of stitching have been explored and the most robust method identified. Unwrapping of intrascan phases is first accomplished with a two-dimensional phase unwrapping algorithm. Individual scan positions are then stitched together using median phase differences between multiple adjacent scans to create coherent planes of data. Amplitude-stitching is done by averaging across scans and preserving the integrated squared pressure across the overall aperture. This method has been verified using reference microphones. This stitching method has been applied to scan based measurements of a military aircraft, exhibiting its effectiveness dealing with a partially correlated complicated source. This method works well for low-frequency jet data, where there is not a ground-based interference null creating a physical phase discontinuity. This technique provides direction for efficient experimental design for scan-based array measurements of extended sources. [Work sponsored by ONR.]
Arsenic and other Heavy Metals in Surface Water and Shallow Groundwater in Utah Valley, Utah
Brandon B Davis, Utah Valley University Physical Sciences A recent study (Ferreira 2013) examined concentrations of fluvial As and transition metals associated with As in Provo and American Fork Rivers, which flow westward across the Wasatch Range and drain into Utah Lake. Within Utah Valley average fluvial As for Provo River (As= 0.342 mg/L) and American Fork River (As= 0.152 mg/L) exceeded the EPA standards for freshwater streams for acute exposure (As= 0.340 mg/L) and chronic exposure (As = 0.150 mg/L), respectively. The objective of this study is to determine whether elevated levels of As and other heavy metals also occur in shallow groundwater in Utah Valley. The objective is being addressed by analyzing water samples from the “backyard wells” in Utah Valley, shallow (depths < 10 m), hand-dug wells which many residents maintain as their "emergency water supply" or for small scale agriculture. Since nearly all backyard wells are unregistered, they are being sought through conversations with water departments, real estate listings and local residents. Water and sediment samples are also being collected from American Fork River, Hobble Creek, Provo River and Spanish Fork River, which drain into Utah Lake. Samples are being analyzed for nitrate, phosphate and sulfate using the Hach DR-2700 Spectrophotometer, while the PerkinElmer Optima 8000 ICP-OES is being used to measure for As, the transition elements Co, Cu, Cr, Fe, Mn, Ni and Zn, and other associated elements Ag, Cd, Pb and Ti. Preliminary results indicate that shallow groundwater As in the American Fork watershed is much lower (mean As= 0.0022 mg/L) than fluvial As and an excellent negative correlation (R2 = 0.83) between groundwater As and Ti. It is suggested that TiO2, which may originate in the Cottonwood Stock in the American Fork watershed, may play a role in the demobilization of groundwater As. Further results will be reported at the meeting.
Improving a Laser Color Sensor Based on a Photodiode Array Using Measurements Made with a 461nm Tunable Laser
Tyler Jones, Brigham Young University Physical Science This project takes advantage of an inexpensive integrated circuit to create a wavelength meter. The circuit has an array of photodiodes, each of which has an optical filter of a different color. The filters cause each diode to respond differently to different wavelengths of light. The relative amplitudes of the signals are then used to compute a wavelength based on known responses for various wavelengths recorded in a calibration stage. The project focuses on improving precision of the hardware and developing an algorithm to do the computation.
Environmental and global carbon cycle signals recorded in 6 million year carbon isotope record from the Paleocene Black Peak Formation, Big Bend National Park
Stephen Ruegg, University of Utah Physical Sciences The Black Peaks Formation (BPF) from the Tornillo Group in Big Bend National Park (BBNP) is comprised of a series of stacked paleosols and sandstone channels deposited by a fluvial system in a sub-tropical intramountain basin during the Laramide orogeny. Paleosols constituting the BPF display alternating drainage and development conditions. The BPF is bounded by the Late Cretaceous Javelina Formation and the Early Eocene Canoe Formation and is therefore thought to be of Paleocene age (65.5-55.8 million years ago). The BPF is an interesting target for paleoenvironmental reconstruction because little data have been generated from the Paleocene for sub-tropical regions, limiting the validation of global climate model predictions in these regions. However, previous attempts to resolve the age of the formation using biostratigraphy, magnetostratigraphy and chemostratigraphy gave ambiguous results limiting the potential of the BPF for paleoenvironmental reconstruction. We analyzed the carbon isotope ratio (δ13C ) of carbonate nodules collected from pedologically distinct paleosols throughout the BPF. δ13C of carbonates nodules found in reduced black paleosols are systematically 3-4‰ lower than δ13C from non-black paleosols from neighboring stratigraphic intervals. We hypothesize that this isotopic difference is related to the lower contribution of atmospheric CO2 to soil CO2 in water-logged and/or poorly drained black soils. Large-scale stratigraphic patterns of carbon isotope variations in carbonate nodules from non-black paleosols throughout the BPF strongly resemble well-documented secular changes in δ13C values of marine carbonates for the Paleocene. Several recognizable features are present in both curves, including the Paleocene Carbon Isotope Maximum (PCMI) and possibly the Late Danian carbon isotope excursion (LDE). These features provide a new basis for correlation of the BPF to the global geological timescale, and suggest that the Formation preserves a 6 million year record of deposition and paleoenvironmental conditions spanning the majority of Paleocene time (63-57 million years ago).