Physical Sciences

Ashley Ostraff, Utah Valley University Physical Sciences Utah Lake has a long history of being impacted by anthropogenic activities like, mining, agriculture, and surrounding industry. All of these activities have contributed to the runoff that feeds the lake, increasing the likelihood that this area contains high levels of trace metals, nitrogen, andphosphorus. Utah Lake contains two subspecies of phragmites, a wetland reed, one native (P. americanus) and one non-native (P. australis). P. australis is replacing the native species at an alarming rate. P. australis is known to have a deeper root system than the native subspecies, because of this we suspect that this allow access to a less competitive soil level giving this subspecies greater opportunity for nutrient and trace metal uptake. By comparing the root zone soils of both subspecies we hope to gather results that support this hypothesis. Examination of the roots will also showthe potential influence the soil conditions have on their growth and development. This study will compare nutrient and trace metal uptake of each subspecies to determine impact. Other factors that will be assessed include plant physiology, carbon to nitrogen ratio (C:N), bioconcentration factor (BCF) and total trace metal content in tissues of both species. Samples of P. americanus and P. australis will be collected at 9 locations in Utah Lake. Soil samples at the root zone of each plant will also be evaluated. Each sampl e will be digested in the Microwave Accelerated Reaction System and analyzed in the Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) for C, N, P, K, Ag, Al, As, Ca, Cd, Cr, Cu, Fe, Hg, K, Mn, Na, Ni, P, Pb, Ti, and Zn. Results from this study will contribute valuable data to future efforts being used to preserve the biodiversity of the plants and animals that live in and around Utah Lake. The end goal of this student project is to be submitted to peer-reviewed scientific journals for publication and to be presented at academic and scientific conferences.

David Sutterfield, Utah Valley University Physical Sciences When sulfide-bearing rocks are exposed to oxidizing conditions, they become destabilized, leaving behind a framework of leached, altered, and replaced host rock called a gossan. Many of these gossans form by the oxidation of ore minerals and have been known since antiquity to be associated with ore deposits. However, the extent and quality of ore mineralization beneath a given gossan cannot readily be determined through surface sampling of minerals. Work conducted by mineral exploration professionals (in Africa, Australia, India, and the Middle East) has indicated that geomagnetic and geoelectric surveys of a gossan can be useful for constraining the shape, size, and economic potential of an associated ore deposit. Although gossans are found in Utah, there have been no published studies of these rock units either in terms of their economic potential or geophysical signature. The objective of this study was to carry out geomagnetic and geoelectric surveys to determine the geophysical signature of gossans exposed about 10 miles northwest of Vernal, Utah, on the southeastern margin of the Uinta Mountains, for the purpose of estimating the grade and depth of possible sulfide mineralization. The gossans overlie a heavily brecciated wedge of Mississippian Madison Limestone and are structurally bounded by the South Flank Fault, which forms the boundary between the Permian Weber Sandstone to the south and the Neoproterozoic Uinta Mountain Group metaquartzites to the north. Geoelectric measurements with an Iris Instruments Syscal Junior Resistivity System and inversion of a portion of the resistivity and chargeability data with the Interpex IX1D Sounding Inversion software shows a resistivity low (~200 Ω·m) and a chargeability high (~7 ms) below 23 m depth. Measurements of total magnetic field using a Geometrics G-856 Proton Precession Magnetometer were modeled with Interpex IX2D-GM Magnetic Interpretation Software and constrained with magnetic susceptibilities of exposed rocks measured in the field using a SM-20 Magnetic Susceptibility Meter. Models based upon a portion of the data show anomalies of amplitude about 100 nT and wavelength about 50 m, suggesting isolated bodies of elevated magnetic susceptibility (~0.08 SI units) with upper surfaces 20-30 m below the surface. Since, based upon the topography, the depth to the water table is also 20-30 m, the geophysical measurements are consistent with the presence of reduced sulfide bodies below this depth. Further work will include interpretation of remaining data and possible drilling for improved calibration of geophysical models.

Brandon Davies, Utah Valley University Physical Sciences Epithelial ovarian carcinoma (EOC) is the sixth most common cancer in US women. The long-term cure rates are low due to the lack of reliable biomarkers for early disease detection, resulting in advanced stage diagnosis. Approximately 75%-80% of ovarian cancers are diagnosed at stages IIIV with a 10% 5-year survival rate despite aggressive treatments. Claudin proteins are being studied as possible biomarkers as they are aberrantly overexpressed in EOC tumors. The Claudin family of proteins are a main component of tight junctions in the upper region of epithelial cells that act as gateways for the exchange of water and solutes while also helping determine the cell’s polarity and function. Changes in these proteins cause changes in phenotype and function of normal epithelial cells, such as proliferation control, trans-epithelial resistance, polarity, and solute transport. Claudin-16 is often aberrantly expressed in breast and ovarian cancer, while Claudins 3- and 4 are highly overexpressed in EOC. The location of these proteins is also correlated with oncogenic transformations and cell proliferation. Determining the specific characteristics of these Claudin proteins can prove to be of incredible benefit in cancer treatments. As these proteins are targeted during these therapies, these tight junctions may then send normal signals, which in turn can regulate the cell normally. The C-termini of the Claudins, which are cytoplasmically located, contain a known PDZ-binding motif and may interact with other junction proteins or with proteins involved in interesting signaling pathways. To identify these interacting proteins, we will use the Expresso T7 Cloning System (Lucigen Corp., Middleton, WI) to purify the Claudin-16, -3, and -4 C-terminal tails to use in pull-down assays. This process includes using affinity tags to capture the Claudin tails by FPLC, which can then be analyzed by SDS-PAGE and, ultimately, the corresponding genes cloned and sequenced. This study can potentially provide crucial information in relation to how members of the Claudin family interact with other proteins that are commonly found in tissues that are misregulated in cancer. With this data treatments can be improved to increase the responsiveness of ovarian cancer patients.

Robyn Omer, Utah Valley University Physical Sciences Removal of all malignant tissue during lumpectomy is critical for preventing local recurrence of the breast cancer. Failure to remove all cancer results in 20-40% of lumpectomy patients returning for additional surgery. At Utah Valley University, a method is being developed to detect cancer during the initial surgery to ensure all of the cancer has been removed. Peak density, which is the number of peaks and valleys in a specified spectral range of a high-frequency (HF) ultrasound signal, correlates to breast pathology in lumpectomy specimens. The objective of this study was to determine if the histograms of peak density versus the number of measurements provide information on corresponding breast tissue pathology. High-frequency ultrasonic data were obtained from a blind study of surgical specimens obtained from 73 lumpectomy patients at the Huntsman Cancer Institute in Salt Lake City, Utah, and South Jordan, Utah. The data were normalized to remove bias between patients. The ultrasonic signals were converted to spectra using a Fourier transform. Peak densities were calculated from the spectra by counting the number of peaks and valleys in the 20-80 MHz range. This was achieved by counting where the slopes of the spectra (their derivatives) crossed zero. A histogram was created by assigning each peak density value to a bin, and then counting the number of measurements that fell within that bin. The histogram of the peak densities produced an asymmetric Gaussian-type distribution with a range of peak density values from 0 to 27 and a mode of 5. Using threshold values determined from a pilot study for differentiating pathology with peak density, it was determined that the peak of the distribution (5-6) corresponded to normal tissue pathology, the shoulders of the distribution (0-4 and 7-10) corresponded to abnormal pathologies, and the tail of the distribution (11-27) corresponded to malignant tissue types. These correlations matched the types of specimens tested, specifically tumors, margins, and lymph nodes. The correlations also provide a measure of the success of removing malignant tissue and achieving negative margins during lumpectomy procedures. Using histograms to analyze the data not only provides a new approach for differentiating tissue pathology, but also provides a statistical measure of the success of lumpectomy procedures performed by a specific surgeon or at a specific institution.

Zachary Coffman, Utah Valley University Physical Sciences Breast density describes the proportion of connective tissue versus the fat tissue in the breast. Studies have shown that women with higher breast density are four to five times more likely to develop breast cancer than women with lower breast densities, (www.women.org/BreastCancer). Higher breast densities have proven to make current breast cancer imaging and detection more difficult. A pilot study done at the Huntsman Cancer institute showed that the ultrasonic parameter peak density, generated by high-frequency (HF) ultrasound (20-80 MHz), was sensitive to breast tissue pathology. The objective of this study was to determine the effect of breast density on ultrasound wave propagation from high frequency ultrasound using phantoms that mimic the histology of breast tissues. Phantoms were created from a mixture of distilled water, agarose powder, and 10X TBE stock solution. In order to simulate breast tissue histology and breast density, polyethylene microspheres were embedded into the phantoms in layers, totaling 4 layers per phantom. The polyethylene microsphere size (90-106 μm diameter) was kept constant within each phantom while the weight percent concentration of the microspheres varied (0.00g to 0.06g). Pitch-catch and pulse-echo measurements were acquired using 50-MHz transducers (Olympus NDT, V358-SU, 50 MHz, 0.635-cm diameter active element), a HF pulser-receiver (UTEX, UT340), and a 1-GHz digital oscilloscope (Agilent DSOX3104A). Glycerol (Genesis Scientific) was used as a coupling agent between the transducers and the phantoms. Spectra were derived from the data, giving peak density (the number of peaks and valleys in a specified spectral range), velocity, and attenuation values. The results showed that peak density did not start to show a trend until phantoms of 0.03g concentrations, where it increased from a value of 14.0 peaks (0.03g) to 18.7 peaks (0.06g). Velocity showed a statistically significant increase with greater polyethylene microsphere concentration, from 1508 m/s for 0.00g to 1536 m/s for 0.06g. No trends were observed for attenuation. These results indicate that higher levels of scattering centers in dense breast tissues will be detectable with high frequency ultrasound. This additionally shows that high frequency ultrasound may also be sensitive to greater amounts of connective tissue present in dense breast pathologies. High frequency ultrasound is sensitive to the weight percent of polyethylene microspheres. Future research is planned to further understand this relationship, including repeat studies and studies of phantoms containing chopped polyethylene fibers and triple the polyethylene microsphere concentrations to more closely simulate dense breast tissues.

Amy Fair Brother, Utah Valley University Physical Sciences Results from a 2010 pilot study indicated that multiple parameters in high-frequency (HF) ultrasound spectra (20-80 MHz) correlate to a range of tissue pathologies in surgical margins from breast conservation surgery (BCS). One of these parameters, peak density, was particularly effective at discriminating between normal, atypical, and malignant patholUtah Conference on Undergraduate Research 2015 100 ogies. Subsequently, Utah Valley University and the Huntsman Cancer Institute initiated a follow-up study to further investigate this approach. Objectives: The purpose of this study was to determine the sensitivity and specificity of HF ultrasound for differentiating malignant tissue from normal tissue in BCS surgical margins. Methods: A 73-patient blind study was conducted with conventional pathology used as the gold standard for assessing the HF ultrasound method. Specimens were delivered by the surgeon’s team immediately following resection and ultrasonically tested outside the surgical suite. The margins were approximately 3x20x20 mm, and were oriented using a small staple inserted by the surgeon in one corner and a stitch on one side. The margin was tested at 2-5 locations on the specimens using our methodology and then sent to pathology for their analysis. 498 specimens were tested from 73 patients. That corresponded to 1112 positions collected from the margins. The data was then analyzed for malignancy using peak density, and then correlated with the traditional pathology. Results: Results from the current study indicate that peak density can differentiate between malignant and nonmalignant pathologies with an accuracy of 73.8%. The correlation between pathology and peak density has a high level of statistical significance compared to random chance, with p = 0.000078 (Fisher’s Exact test). The results also provide data for improving the technique. For example, approximately 3 times more false positives were observed than false negatives, indicating the peak density threshold used for identifying malignant pathology is most likely too low and should be adjusted to a higher value. Conclusions: Results from this study showed that HF ultrasound has the potential to provide rapid, intraoperative evaluation of surgical margins, thereby decreasing the number of additional surgeries for patients and thus increasing the quality and efficacy of surgical treatment for breast cancer.