Physical Sciences
Symmetric Electrochemical Cells in Nonaqueous Organic Redox Flow Batteries – Applications for Longevity Study
Presenter: Julia Case, College of Science, Chemistry
Bioconjugation of Rhodamine-B and C-Phycocyanin from Spirulina Sp.
Presenter: Tyler Holmes, College of Science, Chemistry
Preparation of Monoalkyldiphenylphosphonate by use of Grignard Reagents and Lewis Acids from Triphenyl Phosphate.
Presenter: Sydney Rowley, College of Physical Science, Chemistry
Laser Mediated Photochemistry: Exploring the Isomerization and Decaying Behavior of Dipyrroles
Presenter: Taime Clark, College of Science and Engineering, Physical Science
Measuring Aluminum Fluoride Optical Constants in the EUV
Presenter: Devin Lewis, College of Physical and Mathematical Sciences, Physics and Astronomy
Thermal Imaging of Groundwater Sources into Utah Lake, UT, USA
Presenter: Allison Smith, College of Science, Earth Science
Elucidating the Molecular Mechanism of Action of the Microsclerodermins
Presenter: Billy Nguyen, College of Science, Chemistry
Engineering a microbial fuel cell to reduce methane production in waste water
Presenter: Jessica Hertig, College of Sciences, Physical Science
Phylogenetic Relationships of the Flat-headed Mayflies (Ephemeroptera)
Presenter: Taylor Murphy, College of Science, Biology
Analyzing Fatal Bird-Window Collision Mitigation Occurring at the Classroom and Student Services Building, Brigham City, UT.
Presenters: Hunter Martin, College of Science, Ecology
Determination of the Relationship Between Hypertension and Endogenous Ouabain Placental Concentration in Preeclampsia
Presenters: Samantha Tilley, College of Science, Chemistry
The Effects of Pterostilbene on the Oxidant Status of Red Blood Cells in Hyperglycemic Conditions
Presenter: Hana Hanks, College of Physical Sciences, Chemistry
Pursuit of Methods for Antibiotic Synthesis: The Synthesis and Formal [2+2] Cycloaddition Reactions of 1-Phenylprop-2-en-1-one
Presenter: Madison Fisher, College of Science and Engineering, Physical Science
TELSAM-target protein fusions can form diffraction-quality crystals without direct inter-polymer contacts
Presenter: Braydan Bezzant, Brigham Young University, Chemistry and Biochemistry
The Effect of Roughness on Blazed Gratings in the EUV
Presenter: Ethan Edwards, College of Physical and Mathematical Sciences, Physics and Astronomy
Investigations of force dependence in an atmospheric negative corona discharge between two parallel wires on electrode asymmetry
The general purpose of this research is to investigate the force produced in a negative corona discharge between two parallel wires at atmospheric pressure. This phenomenon has been applied to air purification, cooling of electronics, and optimistically theorized as means for the primary mode of propulsion for small aerial drones. Previous work has elucidated a relationship between force and current, spacing of electrodes, and applied potential. This research specifically deals with quantifying the strength of the relationship between force and asymmetry due to differing electrode radii. The force measurement is obtained via a difference in weight of the hanging parallel wire assembly and many different radii of anode and cathode will be studied. Current results will be discussed.
Impact of Micro- and Nano-Structured Surfaces on Condensation Heat Transfer Effectiveness
Every year, millions of dollars are spent to cool systems that rely on evaporation and condensation of water, such as power generators and desalination plants. Historically, cooling methods have utilized heat exchangers to cool and condense water vapor to be used in a power cycle or for drinking water. This has been found to be somewhat ineffective due to the filmwise type of condensation that occurs, where the surface tension of water does not readily allow for new droplets to form on the heat exchanger surfaces. Superhydrophobic micro- and nano-structured surfaces have recently been discovered to promote high-mobility drops in dropwise condensation, which greatly increases a surface’s ability to cool and condense water vapor. Dropwise condensation is much more effective because droplets can more easily slide off to make room for new nucleation sites, which leads to increased rates of heat transfer. Some of these droplets combine as they slide to clear off even more surface space, and droplets can even spontaneously jump away from the surface as they coalesce due to imbalances with surface tension. Despite the significant academic attention these surfaces have received in recent years, relatively little research has been conducted on the overall effectiveness of these superhydrophobic surfaces in condensation heat transfer. Another important question that lacks addressing is how to improve their survivability, since the surfaces tend to be damaged and rendered unusable easily. The objective of this project is to explore the effect that superhydrophobic surfaces have on condensation heat transfer and to identify factors that lead to sturdier, more conductive surfaces.
Osseointegration on a Carbon-Infiltrated Carbon Nanotube Coated Titanium Surface
Osseointegration plays a vital role in orthopedic surgery, as bone cells should be able to adhere and form on the implant surface to enable strong mechanical connection. Titanium has long been used in orthopedic and prosthetic implants because of its known toughness, strength and low conductivity, and especially its biocompatibility. However, native bone growth onto titanium is not optimal. Previous work in our lab has developed a carbon-infiltrated carbon nanotube surface which exhibits structural antimicrobial properties. The purpose of the present work was to evaluate osteoblast growth on this surface to determine whether the coating was cytotoxic, neutral, or osteogenic. Vertically aligned carbon nanotubes were grown on top of commercially pure titanium samples using ethylene and hydrogen gas at 750C, followed by infiltration at 900C. Our control sample was an uncoated commercially pure titanium sample. Both the control and CI-CNT coated titanium samples were cell cultured with human osteoblasts kept at 39C for approximately 96 hours. The preliminary tests have shown that the CI-CNT coated titanium sample promotes enhanced osteoblast proliferation, as well as functionalization (e.g., they are laying down calcium as part of bone formation). These results may lead to an orthopedic implant coating which provides both structural antimicrobial behavior, as well as enhanced osseointegration.
Sources and Composition of Atmospheric Particulate Matter in the Salt Lake Valley
Air pollutants pose a significant health risk in urban environments. Particulate matter 2.5 microns or smaller (PM 2.5) is of special concern because it can penetrate deep into lungs. Salt Lake City (SLC) is well-known for its winter inversions with PM 2.5 levels frequently exceeding EPA standards, but air pollution during the summer months is of growing concern. While dust storms are known to occur each year in SLC, the predominant source of the atmospheric particles, their origin, chemical composition, and particle size distribution have yet to be identified due to lack of research. Newly exposed lake sediments are highly prone to dust generation. The recent drought in 2011-2016 caused a 30% decrease in the volume of the Great Salt Lake (GSL), and water levels in the GSL fell dramatically to record lows in 2016, exposing large tracts of dry lake bed. It is unclear to what extent these exposed GSL sediments produce dust, and if that dust affects air quality in the Salt Lake valley or represents an important source of atmospherically transported metals to downwind aquatic environments. Our study was designed to answer these research questions. Samples of total particulate matter and PM 2.5 were collected with atmospheric samplers at Westminster College and several other sites. Samples were then digested and analyzed for their trace element and heavy metal content by ICP-MS. Though this study is ongoing, preliminary results suggest a possible increase in particulate matter as the summer progresses, potentially associated with periods with elevated atmospheric particulate matter in the Salt Lake Valley, in part derived from wildfires in the wider region.
Resistivity of Nickel Thin Films
As metal films get thinner, their resistivity increases. We study the phenomenon using nickel films. The nickel films are made in a vacuum system with pressures below 10^-7 Torr. A nickel filament is heated to 1200°C to sublimate the nickel onto our glass substrate. A four-point measuring probe was used to measure voltage drops across the film at known currents. This gave a sheet resistance. Thicknesses of the thin films was verified by images on a scanning electron microscope. Thicknesses varied from 40nm-255nm. Resistivity of films were calculated to be between 22-147Ωnm. A graph of resistivity vs thickness will be presented and discussed on this poster.
A fossil-pollen-based climate reconstruction of two lake records from the Uinta mountain range in northern Utah.
Climate change is an issue that has gained a significant amount of attention in recent years. Specifically, anthropogenic climate change, as we know the Earth's climate goes through cycles of warming and cooling. In recent years, there have been examples climate changing rapidly and creating problems for communities around the world. The goal of this study is to look at patterns of climate change through reconstructing a climate history by analyzing two frozen lake sediment cores northern Utah. The two study sites are from both Newt Lake outside of Vernal Utah and Canyon Lake located outside of Duchesne Utah. In this study we have counted the charcoal from the sediment cores, and we have analyzed the pollen grains in the core. As we count the charcoal from the frozen lake sediment core we are able to determine the study site's fire interval and look at charcoal peaks this can help establish a general idea of how often fires come through the two study sites. Once we gather this data we can examine it to determine if there has been any changes in the fire interval in recent years. Additionally, as we prep and analyze the pollen data in the sediment core we can look at the individual species of pollen to determine the climate envelope of each species to get some idea of what the climate would have looked like at a given time. This study will provide the reader with information about how climate has been changing in Utah and give insight as to what the study sites may have looked like at a given time compared to today.
MultiCRAFTI: Overcoming the Kinetic Energy Limitation to Measure the Cross Section of High-Mass Ions
CRAFTI is an emerging method for measuring molecular collision cross sections using the ultra-high resolving FTICR-MS instrument. Collision cross sections are important measurements to understanding size, tertiary structure, and ligand binding. CRAFTI has been shown to give accurate collision cross sections comparable to those from drift ion mobility, the leading cross section measurement method. Because CRAFTI measurements are carried out under single-collision conditions, CRAFTI can obtain cross sections for non-covalently bound complexes with interactions that are far too weak to address using drift ion mobility, where multiple thermal collisions can disrupt the complexes. However, CRAFTI’s requirement of single-collision ion dephasing is a hindrance to the measurement of larger mass ions because for ions that are massive compared to the neutral collision partner it is difficult to reach sufficient center-of-mass kinetic energy to cause dephasing (which usually occurs via collision-induced dissociation). In this study, we characterize these limitations by measuring different species (tetraalkylammonium, cryptand-metal ion, and cucurbituril complexes) at a range of kinetic energies. For polyatomic ions, CRAFTI cross sections are observed to increase with increasing center-of-mass kinetic energy until they reach a limiting value that is generally similar to cross sections computed from the expected molecular structure. The CRAFTI measurement reaches the calculated cross-section at a specific center-of-mass kinetic energy related to the energy of the bond being broken. We also performed MultiCRAFTI, a new experiment where we overcome the kinetic energy limit through simultaneous measurements of multiple species for internal comparison. Two analytes in a MultiCRAFTI experiment, though both are beneath the minimum kinetic energy requirement, give correct relative cross sections. These MultiCRAFTI measurements represent a new step toward extending the FTICR-MS to vital new areas of measurement in macromolecules and organo-metal complexes.
Design of Martian Recurrent Slope Lineae Analogs to Study a Potential Environmental Niche for Life
Until 2011, researchers knew of only two scenarios where life could exist on Mars: underwater aquifers that were remnants of ancient Martian seas and melting ice at the Martian poles. Yet, evidence now strongly suggests additionally the presence of liquid water on Mars through a phenomenon called reucurrent slope lineae (RSL). Through the action of deliquescence of hydroscopic salts such as magnesium perchlorate, water is likely collected from katabatic winds, forming salty brines on the surface of Mars. RSL sites are found predominantly in the Martian equatorial region. Because RSL provide a setting for liquid water to exist, they may serve as a habitable niche on Mars. To assess this scenario, we independently created RSL analogs and impregnated them with Antarctic microbial extremophiles. The design of our RSL analogs is based on a suite of water concentrations and magnesium perchlorate concentrations, allowing us to represent the variety of RSL geochemical compositions that could be possible on Mars. Since RSL analogs are based a Martian Mojave simulant that is both autoclaved and baked at 250 -, we minimized the possibility of bacterial or amino acid contamination. Current and future studies on RSL will be enhanced based on the foundation that our project provides.
Jet Impingement on Superhydrophobic Surfaces: Effect of Post Microstructure on Heat Transfer
Liquid jet impingement is an excellent solution for many thermal management challenges (e.g. cooling of advanced microelectronic devices) because of its high heat transfer rates. Superhydrophobic surfaces, with micrometer scale posts, have desirable self-cleaning and anti-fouling properties and their use has been proposed in these applications; however, superhydrophobic surfaces also decrease heat transfer rates. The relationship between superhydrophobic surface post microstructure and heat transfer rate in liquid impinging jets has not yet been explored. To better understand this relationship, experiments are conducted with varying pitch, the distance between posts, and varying cavity fraction, the area not covered by the posts divided by the total area. This empirical data is then utilized to develop models, which will predict heat transfer based on pitch and cavity fraction. Designers of thermal management systems may then install post patterned superhydrophobic surfaces in thermal management devices to utilize their desirable properties and may maximize heat transfer rates by selecting the optimal pitch and cavity fraction.
Nanoparticle Synthesis with Microfluidic Devices
Our research focuses on the synthesis of silver nanoparticles using microfluidic devices. These devices are of particular interest to us because of the controlled environment that they provide for reactions to take place. As the name suggests, the “micro” scale of this device gives us a high surface area to volume ratio while the “fluidic” aspect allows a controlled flow rate and pattern. This provides reproducible products with accuracy and precision as we control exactly when turbulent and laminar flow occurs. Our microfluidic device is created by using Polydimethylsiloxane (PDMS), a polymer that is similar to glass. Using a magnesium wire we can shape our microfluidic device to fit the needs of our experiment and then suspend it in PDMS. The magnesium wire can be dissolved once the PDMS solidifies, forming a hollow chamber in which we can perform our reaction and synthesize our silver nanoparticles. Silver nanoparticles have a wide range of applications but the focus of our research will be to learn more about what causes inconsistency in the size of the particles. Since one of the major challenges of nanoparticle synthesis is creating a product that is uniform in size, learning how to control the synthesis process to create highly uniform nanoparticles would be beneficial. To accomplish this, we plan to gather more information about the nanoparticles using Raman spectroscopy. We will also use a UV-Vis spectrometer and spectrofluorimeter to analyze the stages of nanoparticles synthesis.
Using Exoplanet Transits to Calibrate the Great Basin Observatory
Southern Utah University is one of four university partners who manage and operate the new Great Basin Observatory (GBO). As partners, SUU students have priority access to the remotely operated telescope for astronomical research. Since the GBO telescope is new, its capabilities are still unknown. In order to determine the telescope’s limits, we have started taking photometric measurements of exoplanet transit systems. We then verify that the photometric data is consistent with accepted values. So far we have successfully processed several transits. We plan to continue detecting exoplanet transit systems with lower signal to noise ratios until the transit dimming is too faint for our telescope to detect. Once our work is finished, we will have a better understanding of the GBO limits which will benefit future SUU students and other GBO university partners.
Habitability of Martian Recurring Slope Lineae: Building Capacity for Exploring Terrestrial Analogs for Astrobiology
Recurrent Slope Lineae (RSL) are dark, narrow streaks of flowing brine water on Martian hillsides. Perchlorate salts found in especially high abundances in RSL regions may be responsible for their formation. It is believed that through a process called deliquescence, the salts act as a type of “sponge,” absorbing atmospheric water and seasonally saturating the hillside. These saturated soils may act as a niche for life. In order to better understand the potential habitable space of RSL, we created RSL analogs with various salt and moisture concentrations. The analogs were then impregnated with extremophilic microbial communities derived from Beacon Valley, Antarctica. Metagenomic and metatranscriptomic results assess the potential habitable space of RSL on Mars.
Synthesis and Characterization of Low Toxicity Extraction Solvents
It cannot be refuted that water is a precious resource, and society faces a challenge as the demand for clean water sources increases. Presence of heavy metal contaminants and other toxic organic compounds render water useless for consumption without going through extensive processing. However, some of the metal contaminants have market value; therefore, efficient extraction methods which support recovery of these precious metals are essential. Hydrophobic materials that have high affinity for target metals can sever as effective solvents in the biphasic extraction process. Ionic liquids, which are organic salts that exist as liquids at room temperature, can be designed to possess hydrophobic properties and can function as eco-friendly means of separating rare earth heavy metals. Additionally, the ionic liquids can also be used to extract and recover organic compounds such as biofuels. The focus of this research is the synthesis and characterization of phosphonium based ionic liquids, designed to exhibit high extraction efficiency of metals and organic compounds while exhibiting low toxicity to organisms. The ionic liquids were tested for extraction of various organic compounds, including biofuels, as well as for metal complexes. This new approach to extraction would support an environmentally friendly method of purifying contaminated water systems and for the extraction and recovery of commodity chemicals.
Unexpected Copper Nanoparticle Synthesis from Bulk Copper Metal
Copper nanoparticles have applications in many fields including antibiotics and engineering nanofluids. The difficulty with producing copper nanoparticles, compared to synthesizing gold or silver nanoparticles, is that copper nanoparticles oxidize when exposed to oxygen. Oxidation causes nanoparticles to dissolve. We have discovered that hydrochloric acid dissolves copper metal when sonicated. This is a result not expected thermodynamically. Likewise, at low hydrochloric acid concentrations copper nanoparticles form when the solution is sonicated. Neither of these results are expected and neither have been used to explore methods for copper nanoparticle synthesis. Using these findings, we developed a new method to synthesize copper nanoparticles from bulk copper metal. We are testing how controlling the level of oxygen effects the nanoparticles produced. We are working to find optimal oxygen concentration as well as hydrochloric acid concentration to consistently synthesize nanoparticles. We will report on our results up to this point.
Public Understanding, Opinions, and Questions about Hot Topics in Science
Past research has shown that, though the U.S. public generally views science favorably, the benefit of scientific inquiry has decreased in value. According to the PEW Research Center (2015), only 79% of people thought science was generally positive and made life easier for most people. This paper seeks to explore why people may view science negatively by gauging participants’ responses to genetically modified organisms, a controversial topic in science. Participants were gathered from upper division writing courses at the University of Utah, and they were asked to complete a science knowledge quiz, several questionnaires, an interview, and a think aloud protocol. Their responses were analyzed to determine their science knowledge and what questions they had about GMOs and science. Preliminary findings show most questions were geared towards the methods behind GMOs. References: Funk, C.,Rainie, L., and Page, D. (2015). Public and scientists’ views on science and society. Pew Research Center. Retrieved from http://assets.pewresearch.org/wp-content/uploads/sites/14/2015/01/PI_ScienceandSociety_Report_012915.pdf
Grain Boundaries and Diffusivity
Diffusion of atoms through materials is important for a number of material processes, such as air purification, fuel cells, and material behavior. The interfaces between crystals, also known as grain boundaries, are considered to be rapid diffusion pathways through a material. To better understand how these grain boundaries affect diffusion in a material, we simulate diffusion in a variety of atomic structures. The goal is to correlate the diffusivity with other properties of the grain boundaries, such as their energy.
Effects of fire on aquatic ecosystems
The Brian Head fire, which began due to human action in June 2017, quickly wreaked havoc in the western corner of the Dixie National forest. It covered roughly 72,000 acres of land1. The full impact of the fire has yet to be discovered, but there is an urgent necessity to evaluate the drastic changes to the ecosystem. In this study, we aim to look into variations in water chemistry of two streams crossing the Brian Head burn scar. We will conduct weekly monitoring of the pH, dissolved oxygen, water velocity, temperature, and turbidity. Our two sites are located on along the Second Left Hand Road, in Middle Creek and Parowan Creek. Our goal is to evaluate how the fire affects these streams not only through ash deposits but flooding and erosion as well. Water velocity and turbidity will be more reflective of punctual episodes of flash flooding that have occurred on multiple occasions in the Parowan area since the fire. We can see that the road and the stream banks have already been significantly altered, our study will allow us to have a deeper understanding of how the fire affected the area and its ecosystem. Future studies will include and biological assessment through the invertebrate community of the streams. 1 (2017, June 18). Brian Head Fire. InciWeb. Retrieved from www.inciweb.nwcg.gov
Blu-ray Thermal Scanning Microscope
The purpose of this research is to develop a non-contact method for measuring the thermal properties of a material. The technology used is fluorescence thermometry, which involves reading the fluorescent signal emitted by a material and relating it to temperature. Although this is not a new technology, this application of the technology will allow us to measure properties at a microscopic level. To achieve this, we are using the PHR-803t laser optics found in the discontinued XBOX 360 HDDVD reader. This device was chosen due to its low cost, as well as the availability of an open-source project that provided a basis for controlling the laser optics. The temperature capture process is as follows: coat a sample with a photo-sensitive material; expose sample to blue laser (405 nm); heat the sample by modulated infrared laser; capture the emitted fluorescent signal with a photodiode; obtain the magnitude and phase shift of the fluorescent temperature compared to the heating laser through lock-in amplification; calculate temperature based on the magnitude and phase shift; fit theoretical curve to determine thermal property. My contributions to this research have been in the control of the lens actuator and laser diodes contained in the PHR-803t, lock-in amplifier circuitry, control of actuators for translation of the sample in 2D space, and system integration and design.
Uncertainty in Optical Particulate Counting Sensors
In order to mitigate the health problems and environmental damage caused by the burning of biomass in homes across the developing world, there is an international effort to design clean burning cookstoves with greater efficiency and fewer harmful emissions. An important measuring tool for gauging the effectiveness of these alternate stoves is the optical particulate counter. This type of sensor beams light through the contaminated air and measure how much of that light is refracted. Based on these measurements, the size and amount of particles in the air can be inferred. However, for the most part, these measurements are taken at face value, without an understanding of the amount of uncertainty involved in the measurement process. This project describes the development of an accurate mathematical model for a particular sensor, the OPC-N2 by Alphasense, and states how this model leads to increased understanding of the uncertainty involved in the operation of our sensor and therefore, sensors like it.
Chemistry Laboratory Safety: Misconceptions among First-and Second-Semester General Chemistry Students.
The general chemistry laboratory can be a dangerous place, and the possible danger is amplified by the fact that general chemistry is frequently a student’s first chemistry laboratory experience. College students come from a variety of backgrounds with only some having had chemistry in high school, and therefore many students will not know beforehand what kind of precautions to take or what kind of action to take in case of an accident in the lab. Safety information is given briefly at the beginning of the semester, but the efficacy of this is uncertain. An online survey was conducted to gauge first- and second-semester general chemistry students’ knowledge about chemistry laboratory safety and the data gathered was analyzed. This survey was conducted at two secondary schools in two different countries. Statistical analysis will be presented. Results will allow discernment of misconceptions held by students over two semesters and between countries, and conclusions can be made about the effectiveness of current laboratory safety instruction methods.
Effective Dissolution of Keratin Using Ionic Liquids to Extract Radioactiv e Materials
Dissolution using ionic liquids has been shown to be an efficient analytical method of dissolving keratin fibers. Using wool and hoof material from livestock, chloride-based ionic liquids were used to break down the hydrogen bonds important for keratin structure, making the extraction of constituent material much easier. Efficient methods of extraction allow for small samples to be analyzed while still providing high yields; efficient dissolution of keratin in a small sample size will be utilized to prevent any harmful effects on the animals. Ionic liquids are nondestructive solvents which allow for the safe extraction of organic substances. Denaturing keratin would help in the process of identifying any constituent radioactive materials. Efficient identification of radioactive material in livestock is crucial for maintaining health and quality of life.
Expression of the C-terminal Domains of the Tight Junction Proteins Claudin-16, -3, and -4 to Identify Interacting Proteins in Epithelial Ovarian Carcinoma
Epithelial ovarian carcinoma (EOC) is the sixth most common cancer in US women. The long-term cure rates are low due to the lack of reliable biomarkers for early disease detection, resulting in advanced stage diagnosis. Approximately 75%-80% of ovarian cancers are diagnosed at stages IIIV with a 10% 5-year survival rate despite aggressive treatments. Claudin proteins are being studied as possible biomarkers as they are aberrantly overexpressed in EOC tumors. The Claudin family of proteins are a main component of tight junctions in the upper region of epithelial cells that act as gateways for the exchange of water and solutes while also helping determine the cell’s polarity and function. Changes in these proteins cause changes in phenotype and function of normal epithelial cells, such as proliferation control, trans-epithelial resistance, polarity, and solute transport. Claudin-16 is often aberrantly expressed in breast and ovarian cancer, while Claudins 3- and 4 are highly overexpressed in EOC. The location of these proteins is also correlated with oncogenic transformations and cell proliferation. Determining the specific characteristics of these Claudin proteins can prove to be of incredible benefit in cancer treatments. As these proteins are targeted during these therapies, these tight junctions may then send normal signals, which in turn can regulate the cell normally. The C-termini of the Claudins, which are cytoplasmically located, contain a known PDZ-binding motif and may interact with other junction proteins or with proteins involved in interesting signaling pathways. To identify these interacting proteins, we will use the Expresso T7 Cloning System (Lucigen Corp., Middleton, WI) to purify the Claudin-16, -3, and -4 C-terminal tails to use in pull-down assays. This process includes using affinity tags to capture the Claudin tails by FPLC, which can then be analyzed by SDS-PAGE and, ultimately, the corresponding genes cloned and sequenced. This study can potentially provide crucial information in relation to how members of the Claudin family interact with other proteins that are commonly found in tissues that are misregulated in cancer. With this data treatments can be improved to increase the responsiveness of ovarian cancer patients.
Spatially Understanding Utah’s Water Resources: A Story Told through Maps
Successful management of the arid West requires a basic knowledge of available water resources, withdrawals, and existing management efforts. Utah, the second driest state in the country, is continuing its efforts to restore impaired water systems and teach the next generation to conserve water. Because of a fast-growing population, the diversity of Utah’s landscape, and strict regulations that govern water throughout the state, understanding the region’s current water condition can be difficult. Historically, the majority of this information has been stored in databases, represented by only numbers and statistics. In an effort to better conceptualize this data and increase the spatial understanding of Utah’s water, a set of maps have been produced. These maps were created using ESRI’s ArcMap software and Adobe Illustrator. Included are major lakes and rivers, average annual precipitation, average annual streamflow, total urban withdrawals per county, total agricultural withdrawals per county, and water management. Viewing visual representations of this information in multiple maps can aid in creating spatial inferences, and raise additional questions regarding aquatic restoration and management throughout the state. This set of maps can also be used to supplement physical science education at all school levels. Future work includes distributing these maps as posters to schools and water managers, as well making it a resource for teachers via websites and fact sheets.
Measuring the Effect of Breast Density on High Frequency Ultra sound using Tissue Phantoms
Breast density describes the proportion of connective tissue versus the fat tissue in the breast. Studies have shown that women with higher breast density are four to five times more likely to develop breast cancer than women with lower breast densities, (www.women.org/BreastCancer). Higher breast densities have proven to make current breast cancer imaging and detection more difficult. A pilot study done at the Huntsman Cancer institute showed that the ultrasonic parameter peak density, generated by high-frequency (HF) ultrasound (20-80 MHz), was sensitive to breast tissue pathology. The objective of this study was to determine the effect of breast density on ultrasound wave propagation from high frequency ultrasound using phantoms that mimic the histology of breast tissues. Phantoms were created from a mixture of distilled water, agarose powder, and 10X TBE stock solution. In order to simulate breast tissue histology and breast density, polyethylene microspheres were embedded into the phantoms in layers, totaling 4 layers per phantom. The polyethylene microsphere size (90-106 μm diameter) was kept constant within each phantom while the weight percent concentration of the microspheres varied (0.00g to 0.06g). Pitch-catch and pulse-echo measurements were acquired using 50-MHz transducers (Olympus NDT, V358-SU, 50 MHz, 0.635-cm diameter active element), a HF pulser-receiver (UTEX, UT340), and a 1-GHz digital oscilloscope (Agilent DSOX3104A). Glycerol (Genesis Scientific) was used as a coupling agent between the transducers and the phantoms. Spectra were derived from the data, giving peak density (the number of peaks and valleys in a specified spectral range), velocity, and attenuation values. The results showed that peak density did not start to show a trend until phantoms of 0.03g concentrations, where it increased from a value of 14.0 peaks (0.03g) to 18.7 peaks (0.06g). Velocity showed a statistically significant increase with greater polyethylene microsphere concentration, from 1508 m/s for 0.00g to 1536 m/s for 0.06g. No trends were observed for attenuation. These results indicate that higher levels of scattering centers in dense breast tissues will be detectable with high frequency ultrasound. This additionally shows that high frequency ultrasound may also be sensitive to greater amounts of connective tissue present in dense breast pathologies. High frequency ultrasound is sensitive to the weight percent of polyethylene microspheres. Future research is planned to further understand this relationship, including repeat studies and studies of phantoms containing chopped polyethylene fibers and triple the polyethylene microsphere concentrations to more closely simulate dense breast tissues.
Plant Fossil Locality in the Shinarump Member of the Chinle Formation (Upper Triassic) of Southwestern Utah (Washington County)
A newly discovered plant fossil locality in the Chinle Formation (Upper Triassic) in Washington County broadens the distribution of known Late Triassic plant fossil localities to include southwestern Utah. Previously reported plant localities in the Chinle Formation are known from southeastern Utah, Arizona, New Mexico, and equivalent strata from the Dockum Group in Texas. The majority of the known plant fossil localities are from higher stratigraphic units of the Chinle Formation. However, the new Washington County locality is from the older, basal unit, the Shinarump Member. The plant fossils identified from the new locality include fronds of the fern Phlebopteris sp., fertile leaves of the fern Cynepteris sp., and leaves of the bennettitalean Zamites sp. Undetermined species of conifers are represented by a partial branch and a three- dimensionally preserved cone containing well preserved seeds. The diversity of species found at the Washington County plant fossil locality correlates with other known floral assemblages from the Chinle Formation, suggesting general homogeneity of Chinle Formation floras. These plant fossil assemblages support interpretations of basal Chinle Formation paleoclimates as humid and warm.
High-Frequency Ultrasound (20-80 MHz) for Analyzing Breast Cancer Surgical Margins: A 73-Patient Clinical Study
Results from a 2010 pilot study indicated that multiple parameters in high-frequency (HF) ultrasound spectra (20-80 MHz) correlate to a range of tissue pathologies in surgical margins from breast conservation surgery (BCS). One of these parameters, peak density, was particularly effective at discriminating between normal, atypical, and malignant patholUtah Conference on Undergraduate Research 2015 100 ogies. Subsequently, Utah Valley University and the Huntsman Cancer Institute initiated a follow-up study to further investigate this approach. Objectives: The purpose of this study was to determine the sensitivity and specificity of HF ultrasound for differentiating malignant tissue from normal tissue in BCS surgical margins. Methods: A 73-patient blind study was conducted with conventional pathology used as the gold standard for assessing the HF ultrasound method. Specimens were delivered by the surgeon’s team immediately following resection and ultrasonically tested outside the surgical suite. The margins were approximately 3x20x20 mm, and were oriented using a small staple inserted by the surgeon in one corner and a stitch on one side. The margin was tested at 2-5 locations on the specimens using our methodology and then sent to pathology for their analysis. 498 specimens were tested from 73 patients. That corresponded to 1112 positions collected from the margins. The data was then analyzed for malignancy using peak density, and then correlated with the traditional pathology. Results: Results from the current study indicate that peak density can differentiate between malignant and nonmalignant pathologies with an accuracy of 73.8%. The correlation between pathology and peak density has a high level of statistical significance compared to random chance, with p = 0.000078 (Fisher’s Exact test). The results also provide data for improving the technique. For example, approximately 3 times more false positives were observed than false negatives, indicating the peak density threshold used for identifying malignant pathology is most likely too low and should be adjusted to a higher value. Conclusions: Results from this study showed that HF ultrasound has the potential to provide rapid, intraoperative evaluation of surgical margins, thereby decreasing the number of additional surgeries for patients and thus increasing the quality and efficacy of surgical treatment for breast cancer.
Towards The Synthesis Symmetrical and Asymetrical Bimetallic Complexes for Use in Studies of the Oxygen Reduction Reaction
The ability to reduce O2 in mild conditions holds many important implications such as: use as an economical fuel cell, pharmaceutical synthesis, biomass degradation and conversion of small molecules to fuels. We are building the [M(μ-OH) (oxapyme)M(H2O)]+ molecules and symmetrical counterparts for use in O2 reduction reactions (M = Cobalt, Nickel, Iron). The precursors to the [M(μ-OH)(oxapyme)M(H2O)]+ have been synthesized as follows. 2-[5-(2-Nitro-phnyl)-[1,3,4]oxadiazol- 2-yl]-phenylamine serves as the backbone of the complex, allowing for two distinct ligands to be attached to each side. Initial yields for this synthesis averaged at 6%. To be able to complete the synthesis this needed to be significantly raised. The literature procedure was modified in various ways until new reaction conditions were found that allowed for 40% yield. Other precursors include 2,2’-(1,3,4)Oxadiazole-2,5-diyl-bis-aniline which also serves as a ligand backbone but differs in that it allows for preparation of a symmetrical ligand have been synthesized with a 51% yield. The first ligand Bis-pyridine-2-ylmethyl-amino has been produced with a 60% yield. The second ligand Methyl-pyridine-2-ylmethyl-amino has been synthesized with an approximate yield of 75%. These yields are high enough to finish the synthesis of the ligand and subsequently coordinate the metals. Upon completion, the electrochemical properties of the compounds that differ in the metal composition and the ligand (symmetrical versus asymmetrical) will be determined using studies such as cyclic voltammetry. Once the metal and ligand that are most apt at oxygen reduction is determined, more advanced studies will be undertaken to identify the reaction mechanism and intermediates.
Invasive Aquatic Species Attachment Inhibited by Surfactant Paint
Invasive marine and freshwater species have a detrimental impact on aquatic ecosystems and are easily transferred between bodies of water as a result of unregulated settlement and attachment to commercial and recreational watercraft. This results in infestation of waterways and disruption of native organisms throughout an ecosystem. The quagga mussel (Dreissena rostriformis bugensis) is one example of such invasive species that has called for a focus on cross-contamination prevention. The goal is to use aquatic paint suitable for watercraft that prevents the settlement and/or attachment of various aquatic species such as algae, snails (Physa sp.), anemones (Aiptasia sp.), and quagga mussels. The paint is integrated with newly developed surfactants that act as an inhibitor to the adherence ability of invasive aquatic species. The surfactants are added to provide a barrier between the paint surface and the organisms creating an undesirable surface area for the organisms to attach. This barrier disrupts the specific naturally occurring chemical and physical processes that allow organisms to adhere to surfaces. The most innovative characteristic of the surfactant-based paint is its effectiveness on adherence inhibition without degradation, dissociation, or toxicity to the environment. Preventing adherence of invasive organisms to surfaces could have significant positive effects on the efficiency and cost of operations in marine environments and waterways.
Analytical Chemistry Applications for Ionic Liquids as Novel Solvents
Current techniques for isolating components of samples found at crime scenes by their unique chemical properties are lengthy and often destroy important forensic evidence. New methods aimed at forensic analysis of sensitive, minute samples are critical to the intelligence community. In particular, successful extraction of dyes from materials found at crime scenes will provide innumerable benefits for matching, identifying, and finding origins of these materials and dyes. Ionic liquids possess the necessary chemical properties to ensure efficient extractions while maintaining the forensic signatures of the original materials. Ionic liquids, which are organic salts that are room temperature, provide a versatile solvent to achieve single-component extraction-separation-identification of forensic analytes. Following extraction, successful identification by infrared, absorption, and fluorescence spectroscopy has provided evidence of preserved quality and complete separation of material and dye. This novel approach to forensic analysis is advantageous particularly when sample sizes are extremely limited, but it can be readily scaled to larger applications. Developing a simple and affordable method of achieving specific molecular interactions provides a solution for often unidentifiable evidence in crimes. Harnessing the versatility of ionic liquids in a high-yielding recovery and efficient single-pot methods will enhance forensic abilities for the intelligence community and forensic investigators.
Patterning Supported Lipid Bilayers with Magnetic Tweezers
Lipid bilayers have many important purposes in living cells. A lipid bilayer forms a barrier which separates the fluid inside the cell from the fluid surrounding the cell. The arrangement of components within cell membranes can be extremely important, particularly in cell communications. For example, when our immune system attacks certain pathogens, it recognizes them by specific proteins in the inner and outer regions. This can be thought of as forming a “bull’s-eye” shape. The ability to generate such patterns in bilayers might see applications in many areas of biology. Our goal is to take an initially un-patterned supported lipid bilayer (model cell membrane) and use magnetic tweezers as a delivery system to generate patterns. We hope to show pattern formation using fluorescent-labeled lipids within our bilayer. In the past, we have used streptavidin and biotinylated lipids with Oregon Green. Currently, we are pursuing a fluorescein/anti-fluorescein system that has been yielding much more promising results. We are currently using a fluorescent microscope to confirm that patterns are forming within the bilayer.
Correlation of Force and Peak Density during High-Frequency Ultrasound T esting: A Reliability Study
The Breast Cancer Research Laboratory at Utah Valley University has been using high-frequency ultrasound to test the pathology of surgical margins from breast cancer conservation surgery. Their studies have shown that high-frequency ultrasound may be sensitive to a range of breast pathologies. The ultrasonic parameter that has been shown to be the most sensitive to pathology is the number of peaks (peak density) in the frequency spectra from the captured waveforms. During testing, the ultrasonic transducers apply an amount of force to the tissues that can vary depending on the researcher. The central question of this study was to determine the effect that the applied force has on the final peak density reading, and therefore the reliability of the results. In order to determine the correlation of force and peak density, an experiment was designed to measure the force applied to tissue by the ultrasonic transducer during testing and to simultaneously measure the applied force while collecting ultrasonic waveforms. An Arduino Uno R3 instrument was obtained as well as an Interlink Electronics FSR 406 force sensor pad. The Arduino was programmed to read the voltage from the FSR sensor and use that information to provide force (N) and pressure (N/cm2) data from the stage. Peak density readings from bovine mammary tissue (very similar to human breast tissue) were acquired using varying amounts of force. The results obtained exhibited significant changes in peak density with applied force. The results showed that if the applied force is under 1.18N, the peak density will fluctuate significantly and will therefore give inconsistent results. However, if the force applied is greater than 1.18N, the peak densities will maintain a relatively consistent form. In conclusion, if the force applied during testing is above 1.18N, the waveforms captured from high-frequency ultrasound testing on breast cancer tissues will provide consistent and reliable results, thus improving the quality of the data and accuracy of diagnosis.
Hip Joint Center Differences between Dual Fluoroscopy, Functional Hip and Coda—Establishing a Reference Standard
Measurements of joint angles, moments, and forces can be sensitive to positional changes in the center of a joint. Due to its deep location, the hip joint center (HJC) can be difficult to determine. Regression equations and functional methods use skin markers and are commonly used to measure the HJC, yet introduce sources of error such as bony landmark identification, soft tissue artifact, and system resolution. Additionally, the accuracy of said methods cannot be established in-vivo without a reference standard. The purpose of this study was to implement a dual fluoroscopy (DF) and model-based tracking technique to quantify the subject-specific HJC position in-vivo. This reference standard (DF-HJC) was then compared to the HJC defined by regression equations (CODA) and a functional method (FHJC) using skin markers. Five subjects with normal hip anatomy provided informed consent to participate in this IRB approved study. A gait marker set was applied to the subject’s skin. The subject performed various activities involving the inferior limb while a 10-camera Vicon system measured the position of the skin markers. From these data, the CODA and FHJCs were identified. Simultaneously, the hip was visualized using a DF system, and the DF-HJC was identified using model-based tracking. The DF-HJC was then transformed to the Vicon coordinate system for comparison with the CODA and FHJCs. The average Euclidean distance (and standard deviation) for the five subjects from the DF-HJC was 2.0 (0.6) cm for CODA and 1.3 (0.4) cm for the FHJC. To our knowledge this is the first study to use DF and model-based tracking to measure the in-vivo position of the HJC. This technique affords greater accuracy in determining subject-specific bone geometry and visualization of deep hip anatomy, thus may be considered a reference standard for identifying the HJC.