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Ethical Analysis of Web3 and Decentralized Internet

March 21, 2024 12:00 AM
Authors: Karli Kallas. Mentors: Jared Colton. Insitution: Utah State University. For this presentation, I will present a care ethics analysis of Web3 and decentralized internet, with a specific focus on privacy concerns and the increase of internet scams due to the lack of regulation and accountability. Ethics of care argues that there is moral importance in promoting the well being of care givers and receivers in a network of social relations, recognizing that all human life is co-dependent. It is important to note that care ethics was not designed to engage with such large networks of relationships, I will be expanding it to apply to the situation, so it gives us one new way of viewing the situation. I will expand on this ethical lens by including points from care ethics such as the empathy in the design of Web3, and responsibility for online communities. My research explores the intricate web of relationships and responsibilities in the decentralized environment, aiming to shed light on the vulnerabilities within internet scams in contrast to the benefits of cryptocurrency. I examine the moral dimensions of these scams, considering the impact on individuals and the broader digital community. The emphasis on care ethics demonstrates the interconnectedness of actors within Web3, as well as the need for a collective commitment to certain forms of innovation.

Rotational Dynamics of Thrown Food Items and Their Impact on Canine Catching Success

March 21, 2024 12:00 AM
Authors: Caleb Slade, Evelyn Davis, Michael Orr, Brevin Bell. Mentors: Vinodh Chellamuthu. Insitution: Utah Tech University. Our study examines a viral video featuring a dog named Fritz who consistently fails to catch thrown food items. This research aims to determine whether Fritz's inability to catch is a result of his owner's throwing technique or Fritz's own inherent clumsiness. To investigate this, we employ a mathematical model based on kinematic differential equations to analyze the rotational dynamics of various geometrical shapes that simulate the thrown food items. By pinpointing moments in the projectile trajectory where the food items are most easily caught, we provide empirically-based recommendations aimed at improving Fritz's success rate.

Lake Bonneville's Legacy: Unraveling Genetic Drift and Diversity Loss in West Desert Bonneville Cutthroat Trout

March 21, 2024 12:00 AM
Authors: Tanner Van Orden, Dennis Shiozawa, Peter Searle, Ana Kokkonen, Paul Evans. Mentors: Paul Evans. Insitution: Brigham Young University. The Bonneville cutthroat trout (Onchorynchus clarki utah) is the only trout species native to the Northern and Southern Snake ranges in Eastern Nevada. Streams on the east side of both ranges flowed into Lake Bonneville 12,000 – 15,000 years ago when Lake Bonneville was at its maximum. As Lake Bonneville retreated, Bonneville cutthroat trout in these streams were left isolated. To better understand how Bonneville cutthroat trout in the study area are coping with a changing climate, we Investigated the genetic diversity of Bonneville cutthroat in the Northern and Southern Snake ranges and compared them to historic samples. We found highly differentiated cutthroat trout populations in close proximity to each other and a genetic diversity loss of up to 86.3% in the last 12 years.

Using Ecological Niche Modeling to better understand Pediomelum aromaticum, a threatened Utah plant

March 21, 2024 12:00 AM
Authors: Ian Eggleston, Ashley N Egan. Mentors: Ashley N Egan. Insitution: Utah Valley University. Ecological Niche Modeling (ENM) is a very useful technique that gives us insight into a species’ present and possible future ranges, habitats, and niches. ENM has applications within conservational biology as models can be used to understand the extent to which climate change may impact a species. Additionally, ENM can be useful for prospecting for and propagation of rare plant species. This project will use ENM to create predictive range models for a rare plant species, Pediomelum aromaticum, with the goal of defining an ecological niche, determining impact of climate change, and general conservation of P. aromaticum. Here, we will compare 19 bioclimatic variables using correlation analysis and ecological niche modeling to determine which are the most impactful on the range of P. aromaticum. Additionally, ENMs will be created using the MAXENT algorithm from historical and predicted future climate data. By comparing these models, we can hypothesize as to how climate change may impact P. aromaticum. Finally, models will be compared between predicted climate futures defined as shared socio-economic pathways or SSP. SSP models estimate the impacts of human interactions within the scope of environment, governments, and each other to estimate the impact of varying sets of human interactions as defined by modified global behaviors within humanity and the impacts on global climate change. Different ENM models will be created with different SSP climate models so that we can understand how actions taken by humanity right now may impact the critically imperiled species P. aromaticum.

Effect of Print Parameters on tensile and flexure strength of 3D printed plastic

March 21, 2024 12:00 AM
Authors: Baylee Schumacher, Ryley Horrocks, Divya Singh. Mentors: Divya Singh. Insitution: Utah Tech University. 3D printed plastics have gained immense popularity in the recent times given the direct integration with CAD based software platform as well as ease of manufacturing. In addition, use of 3D printed parts can be more economical and less labor intensive.However, the mechanical behavior of these plastics is not well defined. There are many factors that affect the integrity of 3D printed plastic – extrusion temperature, infill pattern and infill percentage being a few of them.In this work, authors have attempted to study the effect of these factors on the tensile and flexure (bending) strength of 3D printed plastics. Firstly, tensile and bending samples are prepared by varying on more of the following – extrusion temperature, infill patter and infill percentage. Further, the specimens are tested in a destructive manner for tensile and flexure strength following the standard tensile and three-point bending technique on a Materials Testing System. The results on the variation in the strength as a function of print parameters provides an insight on the importance of standardizing these parameters to maximize strength and minimize cost.Keywords: additive manufacturing, 3D printed plastic, tensile strength, flexure strength

Effect of a supernova explosion on the mechaincal and thermal stability of orbiting planets

March 21, 2024 12:00 AM
Authors: Alexander Panin, Benjamin Miera. Mentors: Alexander Panin. Insitution: Utah Valley University. Recent searches for extrasolar planets have brought a surprising discovery – almost any star seems to have a planetary system around it. We know that massive stars end their lives in a violent supernova explosion, during which an extremely large amount of energy (~3x10^46 J) is released from the star in a very short time. In this presentation, we analyze the effect of this explosion – primarily the impact of the neutrino flash, the gamma ray flash, and the expanding plasma shell - on the mechanical and thermal stability of an orbiting planet. Our calculations show that a planet's orbit can be significantly disrupted by the momentum of the exploding star shell (depending on the planet's mass and proximity to the host star), but the radiation pressure from the explosion has a much weaker effect. If a star loses too much mass to the expanding shell, any previously stable orbit will become unstable, causing the planets to escape. Additionally, we found that the gamma ray flash and the plasma shell incident on the planet can cause significant heating, while the neutrino flash would have virtually no effect. Also, if a star’s collapse is asymmetric then the star itself can leave the planetary system due to the momentum of the asymmetric neutrino radiation. The sequence of events during a supernova explosion and how they influence such a planet is discussed in the presentation.

Is this you? Foucauldian ethics in multifactor authentication

March 21, 2024 12:00 AM
Authors: Maren Archibald. Mentors: Jared Colton. Insitution: Utah State University. Two-factor authentication was in use as early as 1994 with a patent belonging to telecommunications company Ericsson, which described the tech as “an authentication unit which is separate from preexisting systems." Today, multifactor authentication (MFA) requires a user to prove their identity by way of their knowledge, through a password or one-time code; their possession, through a physical key; or their inherence, through biometrics like a fingerprint or an eye scan. The secure sign-in method has proliferated in recent years, but while significant time has been dedicated to refining it, little if any research has been done in relation to its ethical implications. In his scholarship on discipline, Michel Foucault writes of “examination that places individuals in a field of surveillance.” MFA is one such method of surveillance — various forms track users’ location data, common usage and login hours, and biometric information. In my presentation, I will apply Foucauldian ethics to show how MFA is uniquely situated among other forms of societal documentation because of its purpose. The very data that depersonalizes users into numbers is also meant to be so precise and personal that it is the only way to believe users are who they say they are. And beyond MFA’s treatment of individual users looms the widespread collapse of a distinction between privacy and security. These values are not incompatible, but organizations have implemented MFA in a way that requires users to sacrifice privacy in order to gain security. My research will show how MFA aggrandizes the power differential between users and tech giants and threatens the ability to simultaneously maintain privacy and digital identity.

Construction Techniques in Ancient Fremont Pithouses

March 21, 2024 12:00 AM
Authors: Ellie Martin. Mentors: Mike Searcy. Insitution: Brigham Young University. As part of the 2023 Hinckley Mounds excavation, BYU Field School participants excavated a sizable amount of beam-impressed adobe and burnt wooden beams from the partially excavated pit house. This research proposal will focus on these two types of artifacts and what can be learned about the Fremont people through their study. Specifically, in this research project I will attempt to answer the question of what specific types of wood and adobe were used, and how they were used together to build the Fremont pithouse. To do this, the charcoal will be sent in for wood testing to get dates and tree type. I will also test the beam-impressed adobe to understand the type of clay used to make the hardened adobe. Finally, I will study the beam impressions in the adobe to find the average diameter of the beams used in the pit houses, any outliers in the diameters, and analyze any visible angles on corner pieces to put together a picture of how the beams and adobe came together to form the skeleton of the pit house structure. This research has the potential to reveal much about the Fremont people that lived at Hinckley Mounds, and help us to better understand their living conditions. The research that I conduct will potentially generate data about the age and type of wood used in their living structures, the diameter of the wooden beams they used, and the angles of the corners of the structure. At the conclusion of this research we aim to gain a better understanding of how the Fremont people constructed their dwellings, from the materials to their methodologies. I anticipate finding that the trees they used were locally sourced and date to a similar period of the other dates that we have from the Hinckley Mounds site, between 700–1300 CE. The pithouse will likely prove to be sub-rectangular, similar to Structure 1 at the Hinckley Mounds site, although any angles that can be found in the adobe impressions could give more precise data. All of this new data may serve to provide more insight into how the Fremont lived and chose to operate in their society.

Trace Metal Concentrations of Various Land Use Types Surrounding Utah Lake

March 21, 2024 12:00 AM
Authors: Alex Montgomery, Mason Gordon. Mentors: Eddy Cadet. Insitution: Utah Valley University. TRACE METAL CONCENTRATIONS OF VARIOUS LAND USE TYPES SURROUNDING UTAH LAKEMason Gordon, Alex MontgomeryKeywords: Trace metals, Soil, Land use, Utah LakeUtah Lake has a history of anthropogenic impacts that have resulted in the accumulation of trace metals (TMs) in the sediments of this region. Previous studies have evaluated the water and saturated soils, but have not provided a complete picture of the human impact on upland soils. Some pollutants may be contained in unsaturated soils and never enter the water due to the inherent soil characteristics and chemical properties of the TMs. Elevated concentrations of TMs in the environment pose hazards to the ecosystem and local residents. These impacts can be better understood by evaluating TMs in unsaturated upland soils. In this study a comparison of TMs in saturated wetland and unsaturated upland sediments, as related to anthropogenic sources, was completed. This study analyzed the types and concentrations of TMs to understand their mobility throughout the ecosystem. 52 core samples were collected from the saturated and unsaturated soils in eight sites. These sites represent recently developed areas (New Dev), more established areas (Mid Dev- those that have been developed over five years), recreational areas, mining areas, industrial areas, agricultural areas, and a wastewater treatment plant site. The soil samples were dried, ground, sieved, acid digested, and analyzed in the ICP-OES for TM (As, Pb, Cu, Cr, Cd, and Zn) content. Preliminary results show that TM concentrations in upland sediments were higher than those in wetland sediments. Cr levels in industry and Mid Dev are 43.0 ppm and 47 ppm, respectively. Saturated sediments at the same sites revealed Cr levels of 23 ppm and 21 ppm, respectively. This indicates that TMs are contained in unsaturated sediments. Of the observed land use types, Mid Dev is the most impacted, having the highest elevations of TM levels on average. Cd concentrations exceeded background levels in both New Dev (.97 ppm) and Mid Dev (.83 ppm). This is indicative of anthropogenic impact, as developed areas have higher TM content. The statements of this study will provide information to regulatory authorities in order to create policy to improve human health.

Documenting the Flora of Utah Valley Using Student-written Treatments

March 21, 2024 12:00 AM
Authors: Gideon Bowes. Mentors: Michael Rotter. Insitution: Utah Valley University. Correctly identifying plants in the field can be a daunting task. Making an accurate ID typically requires one to understand a complex lexicon of terminology, possess a level of inherent taxonomic understanding, and have the know-how to traverse complex dichotomous keys and species descriptions. This process often necessitates an array of resources, including large hardbound texts, online references, and stand-alone glossaries of terms. In order to better meet the demands of beginning botanists, we created the Field Manual of the Utah Valley Flora Project. This project includes students taking botany classes at Utah Valley University and tasks them with creating botanical treatments to the plants growing in the Utah County vicinity. The students’ treatments are curated with the objective of providing descriptions that are usable by their peers. Here, we present an example of how treatments are composed using the mustard family (Brassicaceae) and data regarding the efficacy of this project with regard to course learning objectives. The goal of this project is to simplify the identification process by producing a student-written, comprehensive text that is user-friendly and accessible to the beginning botany student.

Another Look at Underlying Mortality Model Used in Life Insurance Industry

March 21, 2024 12:00 AM
Authors: Benjamin Furniss, Britton Borget, John Sanders. Mentors: Patrick Ling. Insitution: Utah Valley University. Mortality model is the underlying model used by life actuaries to price life policies, set reserve amounts, and compute policy values. A mortality model investigates how mortality rates evolve over time. Current insurance law in many states (including Utah) suggest the use of Scale AA (or a similar model) in projecting future mortality rates, which is a special case of autoregression time series model. This model is flawed because it is built on the assumption that (1) there is no ARCH effect in the central death rates data, and (2) there is no unit root in the time series of mortality index. These assumptions are questionable. No wonder why state insurance laws (including Utah state insurance law) are recently revised in recognition of discrepancy between model predicted mortality rates and actual mortality rates. Recent published literatures indicate that the second assumption is questionable, as some statistical tests suggest that there is some near unit root in the mortality model. In this talk we want to argue that ARCH effect is present in the mortality data, so there is need to adopt a time series model that incorporates heteroskedasticity in the mortality data. We will later propose a GARCH model for better predicting future mortality rates – a key task life actuaries conduct, for it is important for life actuaries to predict what will happen over the next few decades of policy term.

Artificial black holes: are they a threat to humanity?

March 21, 2024 12:00 AM
Authors: Tate Thomas. Mentors: Alexander M Panin. Insitution: Utah Valley University. We wanted to see if accidentally creating mini black holes in high energy particle collisions posed a real threat to humanity. To do this, we calculated some properties of such a black hole, such as its life span, radius, density, and minimum energy required. We found that it is unlikely to exist, let alone destroy the planet. Furthermore, we calculated what would happen if it were to exist, finding that it would move through the Earth with little resistance and with a small amount of Earth matter absorbed. Depending on initial velocity, the black either quickly escapes Earth or would settle orbiting it with the orbit part of which passes via Earth. It is interesting that in a simplified model of Earth as of a sphere of uniform density, the inner part of the orbit of black hole is also elliptical (as the outer is) but not Keplerian - with Earth center not at the focus but at the center of another ellipse. In the case of small initial velocity when entire orbit is inside Earth, the period of such inner orbit is constant regardless of birth location and initial velocity of black hole. The goal of this presentation is to discuss the results of our calculations and to explore potential applications to our understanding of interaction of mini black holes with ordinary atomic matter.

HEIGHTS IN THE abc CONJECTURE. AN UNDERGRADUATE APPROACH.

March 21, 2024 12:00 AM
Authors: Brantson Yeaman. Mentors: Machiel van Frankenhuijsen. Insitution: Utah Valley University. There has been considerable curiosity at the graduate and postgraduate level in regards to heights, that is, heights in their relation to Diophantine geometry. One application of heights is in the $abc$ conjecture, which remains highly mysterious. Often, the only height undergraduates encounter is the traditional absolute value. This talk seeks to define the height for use in investigating the $abc$ conjecture and connect it at a level that undergraduates with little experience with number theory may approach. It will introduce the idea of a $p$-adic norm of a number, a projective point, and a view that lends itself to both a simple idea of distance, and yet has an analogue in the Hamiltonian numbers.

Asexual Aviators: Transcriptome Profile of the Life Stages of a Parthenogenic Mayfly

March 21, 2024 12:00 AM
Authors: Avery Larsen, Heath Ogden. Mentors: Heath Ogden. Insitution: Utah Valley University. Mayflies, also known as Ephemeroptera, are members of the anciently derived infraclass known as Paleoptera, the first group of insects that evolved the ability to fly (Gillott, 2005). Distinct developmental characteristics of the life stages of the mayfly are the reason that ephemeroptera are of particular interest. The life stages are; the egg, nymphs, subimago, and imago. The aquatic nymph stage does not have wings but instead has leaf-shaped gills that can be used to help propel the insect through its environment (Eastham, 1936). Centroptilum triangulifer will be used for RNA extractions to study the development of both wings and gills. Objectives for this research are 1). Elucidate, describe, capture, and record distinguishing characteristics of the different instars of Centroptilum triangulifer. 2) Identify key instars integral to gill and wing development in Centroptilum triangulifer. 3) Perform 10 RNA extractions. 4) Use Qubit technology to ensure ≥ 20 ng/μL RNA concentration per ≥ 10 μL. 5) samples will be packaged in thermo-stable shipping boxes and sent to Novogene where samples will be tested once more for quality control. 7) Once the quality is confirmed, samples will be processed using poly-A enrichment and then sequenced using high-throughput Illumina sequencing. Data will be tested for quality control and then sent to Ogden labs. 8). Using an in-house bioinformatics workflow, RNA data will be checked for quality, trimmed, and aligned, before RNA data is first trimmed, and then aligned to Ogden labs transcriptome reference genome. After alignment, the number of reads per gene, or hit counts, are calculated and compared. 9) RNA results of different instars will be compared to each other as well as NCBI databases using the Basic Local Alignment Search Tool.

Accelerated Rates of Evolution in hymenopteran DSCAM genes

March 21, 2024 12:00 AM
Authors: Remington R Motte. Mentors: Carl Hjelmen. Insitution: Utah Valley University. Down Syndrome Cell Adhesion Molecule (DSCAM, an immunoglobulin protein) is a protein that is important for neuronal development, especially in invertebrates. While DSCAM is present in other organisms, it has gone through multiple independent duplication events in arthropods. This has resulted in four to six DSCAM exon clusters with thousands of isoforms throughout arthropoda. Due to DSCAM’s role in brain development, I investigated DSCAM1 evolution and its relationship to the evolution of sociality in arthropods. I defined eusocial as having a common nest, cooperative brood care, reproductive castes and generational overlap. Any species that exhibited one or some of these traits I categorized as sub-social, and any that didn’t show these traits were categorized as solitary. Using Bayesian phylogenetic techniques, I compared DSCAM1 phylogenies to mitochondrion phylogenies and found higher rates of evolution in the DSCAM gene within Hymenoptera. The same increased rates were not found with other eusocial species. I then mapped sociality status onto phylogenies to visualize patterns of evolution and estimate ancestral condition of sociality for common ancestors. Increased taxon sampling within cockroaches and termites (Blattodea), as well as including ambrosia beetles (Austroplatypus incompertus), aphids (Pemphigus spyrothecae) and thrips (Kladothrips) could elucidate the relationship between DSCAM evolution and sociality in arthropods.

Altered Estrus Cycles in POMC-deficient Mice

March 21, 2024 12:00 AM
Authors: Nathan Anderson. Mentors: Zoe Thompson. Insitution: Utah Valley University. The pro-opiomelanocortin (POMC) gene is expressed in the hypothalamus and the pituitary gland. The products of this gene are important for food intake and energy expenditure. Mutations in the POMC gene can lead to obesity, excess hunger, and infertility. We are studying a mouse model of POMC deficiency in order to better understand what causes the infertility. In this experiment, we want to study the estrus cycle of mice who have the POMC mutation. The estrus cycle is similar to the menstrual cycle in humans. Specifically, the estrus cycle can be divided into four different stages: estrus, metestrus, diestrus, and proestrus stages. To determine which stage of the cycle the mice are in, we analyze the cells that are present in a vaginal smear, which is collected by a pipet smear technique, and then can be viewed under a microscope. This technique consists of filling a pipet with 0.9% saline solution and flushing this into the vagina of the mice. The cells lining the vagina will be washed off and then collected back into the pipet. These cells will then be added to a slide where they will be looked under a microscope and analyzed based on the number of cornified epithelial cells, leukocytes, and nucleated cells that are present. We have taken pictures of these smears and are analyzing them to determine what stage of the cycle the specific mouse is in at that time. Data was collected over a several week period. Since the POMC gene is absent in the mice being studied, we expect the estrus cycles in the mice to be abnormal. Based on our results, we will continue our research into looking at the specific hormone levels of the mice.

Exploring the Differences Among Attachment Styles with Cognitive Appraisal and Emotional Suppression

March 21, 2024 12:00 AM
Authors: Rebekah Hakala, Moroni Black. Mentors: Todd Spencer. Insitution: Utah Valley University. Over the years countless studies have delved into the theory of attachment due to its influence in the field of child development. Attachment theory is the idea that the sensitivity of parents or caregivers to a child’s bids for attention affect how the child will bond in relationships (Bretherton, 1992; Wilson-Ali et al., 2019). The style of attachment that a child has can affect them long-term and may influence other relational and developmental characteristics (Kurth, 2013). Due to the influence of attachment, our study investigates the relationship it has with cognitive reappraisal. Cognitive reappraisal is the ability to regulate one’s emotional states and the idea that a change in these thoughts is necessary to change negative emotions (Troy et al., 2017; Clark, 2022). With its ability to process and regulate emotion, cognitive reappraisal is another influential characteristic to the human psyche. Our results and analysis of the relationship between attachment theory and cognitive reappraisal come from a quantitative survey.The purpose of the present study is to examine the relationship among attachment styles and Cognitive Reappraisal. Our sample consists of 411 married individuals. Participants completed The Relationship Questionnaire (RQ; Bartholomew & Horowitz, 1991) and Emotion Regulation Questionnaire (ERQ; Gross & John, 2003). Results of the one way Anova were significant F (3,407) = 3.36, p=<.01. There was a significant difference in levels of cognitive reappraisal among attachment styles. Secure attachment (M=29.95, SD = 6.41), fearful attachment (M=27.27, SD = 5.92), preoccupied (M=27.99, SD = 7.27), and dismissing (M = 28.78, SD = 7.54). Results of the Bonferroni Post-hoc analysis indicated a significantly higher levels of cognitive reappraisal than attachment styles (p.<.001). Results provide empirical support that secure attachment styles tend to be beneficial for cognitive reappraisal.

Development of the midwestern blot technique for elucidation of pigment-binding proteins

March 21, 2024 12:00 AM
Authors: Tessa C Black, Craig D Thulin. Mentors: Craig Thulin. Insitution: Utah Valley University. Monarch butterflies (Danaus plexippus) are a distinctive and beloved species due to their unique wing coloration. In 2022, UVU student Kyri Forman and Dr. Craig Thulin identified seven pigments in monarch butterfly wings, three of which have not yet been identified in any other organism. The novel pigments are modified versions of xanthommatin, and their discovery implies the existence of presently unknown enzymes which catalyze the pigments’ biosynthesis. The western blot and its modified technique, the far western blot, are useful tools for identifying protein-protein interactions using antibodies and bait-proteins, respectively. To identify xanthommatin-binding proteins present in monarch butterfly pupae, we are developing a new blotting technique which we are calling the midwestern blot. This technique uses pigment molecules to identify the presence of pigment-binding proteins within a mixture. The midwestern blot technique will be validated is being validated using cytochrome C, hemoglobin, and myoglobin, three heme-binding proteins of known molecular weight and structure. Once validated, we will use the midwestern blot to identify xanthommatin-binding proteins extracted from monarch butterfly pupae. The midwestern blot will help promote future investigations into pigment-binding proteins, including the enzyme responsible for the novel pigments identified in monarch butterfly wings.

Efficiently and Accurately Simulating Coupled Nonlinear Schrödinger Equations with Exponential Time Differencing and Fourier Spectral Methods

March 21, 2024 12:00 AM
Authors: Nate Lovett. Mentors: Harish Bhatt. Insitution: Utah Valley University. Coupled nonlinear Schrödinger equations (CNLSEs) are an extension of the nonlinear Schrödinger equation (NLSE) that applies to multiple interacting wave systems. They occur naturally in many physical systems, including nonlinear optics, multi-component Bose-Einstein condensates, and shallow water waves. Solitons, which are self-contained, localized wave packets that preserve their shape and speed during propagation, are a significant application of CNLSEs. Solitons are prevalent in nonlinear systems and play a critical role in long-distance information transmission in telecommunications. Despite their widespread use in various fields, solving CNLSEs analytically is challenging, and numerical approximations are necessary. However, solving CNLSEs numerically is a difficult task because of their high nonlinearity.To overcome this challenge, in this presentation, we will introduce, analyze, and implement an established fourth-order Exponential Time Differencing scheme in combination with the Fourier spectral method for simulating one-dimensional CNLSEs. In order to check the performance of this method in terms of accuracy, efficiency, and stability, we will present simulation results on CNLSEs. Our results will consider single, two, and four soliton interactions for homogeneous Neumann, homogeneous Dirichlet, and periodic boundary conditions. The numerical results will show that the proposed method is able to preserve energy and mass for a long time simulation in soliton interactions, as well as preserve the expected order of convergence for the proposed method.

Power Scaling a Nd:YVO4 Laser for Use as the Optical Drive of a Long Wave Infrared Optical Parametric Oscillator

March 21, 2024 12:00 AM
Authors: Alexander Gibb. Mentors: York Young. Insitution: Utah Valley University. Our research group’s long term goal is to build a student-constructed nonlinear optical system to create a tunable source of longwave infrared (LWIR) photons for probing molecules for early detection of disease in human tissue. I previously developed a diode laser system as the optical pump for a 5 Watt Nd:YVO4 laser which was reported at UCUR in Feb 2023. However, recent nonlinear optical calculations for our optical parametric oscillator (OPO) show that we will need the average laser power from that Nd:YVO4 laser to be in the 7-8 Watt range. My work to power scale the Nd:YVO4 laser is described in this presentation.

A Gyroscopic System for Magnified Coherent Diffraction Imaging

March 21, 2024 12:00 AM
Authors: Tyler Daynes, Jair Gonzalez, Jeremy Tait, Josh Jumper, Ellie Purcell, Tyler O'Loughlin, Vern Hart. Mentors: Vern Hart. Insitution: Utah Valley University. Coherent diffractive imaging is a common method for resolving small objects such as cells in order to determine their morphology. In it's essence it takes the diffraction pattern of laser light attenuating through an object and computationally reconstructs them back into the image that the light goes through. On the downside resolution of these diffraction patterns resulting from CCD size and sensitivity can be poor resulting into a less than optimal reconstruction. We have set out to build a system that can magnify this diffraction pattern without distorting the original image of the pattern. We have done this by building our own rastering system that can magnify light on the far edges of our beam. It does this by taking images with a lens attached to the rastering camera. This also has a problem because when the camera moves our detected light quickly falls off the screen of the detector. To fix this we added a gyroscopic system to our camera and lens so that the incident light may hit the system asmuthally at every point on the raster. This in turn will provide a higher quality diffraction pattern for reconstructing in CDI.

Lighting for Different Land Uses: A Case Study in Cedar City

March 21, 2024 12:00 AM
Authors: Sebastian Partida. Mentors: Jamie Spinney. Insitution: Southern Utah University. Lighting levels have an important role in influencing the ambiance and functionality of various land uses. To achieve specified goals while optimizing energy efficiency and sustainability, lighting intensity must be balanced. The purpose of this study was to compare light intensity for different land uses (e.g., residential, commercial, industrial, and recreational). This study measured light intensity (i.e., brightness) for a random sample of different land uses using a digital light meter within Cedar City, UT. GPS coordinates were also acquired in order to map the brightness data. As expected, the results revealed that residential land uses were the darkest, whereas commercial and industrial land uses were the brightest. The findings indicate communities have to maintain a balance between creating a warm and pleasant atmosphere and ensuring appropriate illumination for safety and security purposes. Energy-efficient LED fixtures and smart lighting systems, for example, can provide adjustable and programmable illumination settings that meet both aesthetic and safety requirements.

Evaluating the role of LRRC1 in melanoma growth and metastasis

March 21, 2024 12:00 AM
Authors: Kylee Fernandez. Mentors: Gennie L Parkman. Insitution: University of Utah. Evaluating the role of LRRC1 in melanoma growth and metastasisThe development of brain metastases is a critical problem in Utah, regardless of the novel therapies created for melanoma. The melanoma mortality rates in Utah are 31% higher than the national average and the melanoma incidences are 80% higher. To lower these incidences, our research is aimed at investigating targets in melanoma that play a crucial role in brain metastasis and can be identified as therapeutic interventions.LRRC1 is a gene known as Leucine Rich Repeat Containing 1. LRRC1 is involved in early-stage adipocytic differentiation. Altered gene and protein expression of LRRC1 is observed in melanoma potentially due to the vital role LRRC1 plays in adipose stem cells that differentiate by adopting the phenotypic, biochemical, and functional properties of more terminally differentiated cells. To evaluate the effect of LRRC1 on melanoma growth and metastasis, we are using an established autochthonous in vitro and in vivo model of melanoma based on the RCAS/TVA avian retroviral system. The results of this study will have tremendous potential to contribute to the understanding of the genetics of this heterogeneous disease.

Bx42 is Required for Brain Development and is Linked to Microcephaly

March 21, 2024 12:00 AM
Authors: Adriana Bibo, Nicole Losurdo, Nichole Link. Mentors: Nichole Link, Cindy Greaves. Insitution: University of Utah. Microcephaly is a neurodevelopmental disorder characterized by occipital frontal circumference (OFC) more than two standard deviations below the mean. It can be accompanied by comorbidities including intellectual disabilities, seizures, and other developmental phenotypes. Microcephaly is attributed to malnutrition and exposure to toxins or infection during pregnancy, but genetic mutations are also a leading cause. To investigate the genetic mechanisms behind microcephaly, our lab collaborates with a physician who has completed whole exome sequencing for two hundred microcephaly patients. He identified potentially pathogenic human variants, which we are studying using Drosophila melanogaster as our model organism. We screened for loss of function phenotypes through RNAi knockdown of fly orthologs to determine if these genes are necessary for brain development. In our primary screen, we found that RNAi knockdown of Bx42 in neural stem cells or post-mitotic neurons causes significantly reduced brain lobe volume. In our current study, we are assessing potential causes for reduced brain lobe volume. We seek to determine if RNAi knockdown of Bx42 in neural stem cells or neurons affects cell number, proliferation, or death in developing brains.

Social Effects of Bed Nucleus of the Stria Terminalis Corticotropin-releasing Hormone and Tachykinin 2 Neuronal Activation Using Optogenetic Stimulation

March 21, 2024 12:00 AM
Authors: Nicholas Poll. Mentors: Moriel Zelikowsky. Insitution: University of Utah. Social interaction is one of the chief drivers of evolution and natural selection. Animal interactions shape the ecological world and have shaped the world’s evolutionary timeline. Of the many types of animal interactions, one of the most influential to behavior and development is aggression. Many animals' aggressive behaviors and mechanisms are so distinct that their origins can be traced back to specific selective pressures. These pressures range from reproductive competition to predator-prey interactions and have apparent effects on many species’ developments. There are many stressors that can increase aggressive tendencies found in mammals, yet it’s clear that the neural bases that connect these stressors and their behavioral responses are understudied. The targeted brain region in this project is the bed nucleus of the stria terminalis (BNST). The BNST is a neurochemically diverse node of the extended amygdala that has been implicated in mediating stress and sensory information. It anatomically acts as a relay station between a number of different structures including the hypothalamus and amygdala. The BNST has been implicated to have a role in stressor-induced aggressive behaviors; however, the neural mechanisms that connect this region and these behaviors are relatively understudied. Corticotropin-releasing Hormone (CRH) in mammals displays upregulation following the introduction of a stressor and has been found to mediate aggression and anxiety. Similarly, tachykinin-expressing neurons have been shown to have a role in mediating aggression in mammals. While CRH and tachykinin’s link to anxiety and aggression is well supported, it is not clear to what extent it has on BNST. This project aims to provide data to support the role that CRH and Tachykinin 2 (Tac2) in the BNST have in mediating aggression in mice through optogenetic stimulation.

In the Depths of the Understory: Costa Rican Associations Between Ants and Coccoidea Unraveled using NGS DNA Barcoding

March 21, 2024 12:00 AM
Authors: Sylvia Lee, Ainsley Parkins, Rodolfo S Probst. Mentors: Rodolfo S Probst. Insitution: University of Utah. Mutualisms between ants and plants are ubiquitous interactions and have been evolving for over 100 million years. Studies have been done on systems wherein the plants provide nutritional resources for ants, but the dynamics of mutualistic interactions in environments where host plants do not provide obvious nutritional rewards continue to remain elusive, raising questions about their co-evolutionary histories. In these circumstances, associated fauna, such as mealybugs and soft scales (Hemiptera: Coccoidea: Pseudococcidae and Coccidae), serve as intermediaries of the association, providing honeydew (enhanced plant sap) as a main food source to their host ants. However, the identity of the insects involved in these associations and their co-evolutionary history with ants is poorly understood. By focusing on samples collected in Costa Rica from 33 colonies of the Neotropical plant-ant genus Myrmelachista (Formicinae: Myrmelachistini), we sequenced DNA barcodes (cytochrome oxidase subunit 1 [CO1]) using Oxford Nanopore Technology and employed Next-Generation Sequencing (NGS) for both the Myrmelachista ants and their associated fauna. We aimed to identify their taxonomy, phylogenetic relationships and identify unique interactions between ants and their associated fauna. We recovered DNA barcodes for eleven Myrmelachista species and seven putative species of mealybugs (n=5) and soft scales (n=2). For the seven putative species of Coccoidea, our DNA barcodes, when compared to available sequences from the NCBI database, recovered an average of 85% match similarity. The closest matches associated our putative species to Old World Coccoidea taxa, reinforcing the need for taxonomic studies of this superfamily for the Neotropical region. Each putative species of soft scales was found uniquely associated with two Myrmelachista species (M. flavoguarea and M. cooperi). For all eleven Myrmelachista species, five were associated with two putative mealybug species. One putative mealybug species was associated with five different Myrmelachista species; one was uniquely associated with M. nigrocotea. Same associations were found between the associated fauna of M. flavocotea and M. lauropacifica; M. haberi and M. RSP027; M. plebecula, M. meganaranja, and M. osa, respectively. These results suggest that there may be unique associations between some Myrmelachista species and their Coccoidea associates, unconstrained by the ant phylogeny. Our findings also provide insights on Coccoidea taxonomy, emphasizing NGS DNA barcoding as a tool to illuminate how ant-plant associations might have evolved.

Genetic Mutations in the Genomes of Mother-Offspring Pairs Shows Link Towards Nausea and Vomiting in pregnancy

March 21, 2024 12:00 AM
Authors: Dallin Oyler, Ana Alfaro, Kailee Myxter, Ben Brooks, Amanda Brooks. Mentors: Jessica Pullan. Insitution: Southern Utah University. Nausea and vomiting are common complications that occur in 70% of pregnancies. Hyperemesis Gravidarum (HG) is the most severe form of these symptoms and is estimated to be prevalent in 0.3-2% of pregnancies. Due to the fetal and maternal morbidity associated with HG, identifying the cause and treatment options for these women is a critical task in obstetrics. Research regarding the etiology of HG has been fairly recent and is still ongoing, however, evidence had directed to a positive correlation between increased levels of the serum protein GDF15 and HG symptoms. We hypothesize that polymorphisms in both maternal and fetal DNA plays a role in the upregulated GDF-15 seen in mothers experiencing symptoms of HG during pregnancy. The DNA of 2 mothers and their corresponding children were sequenced and analyzed. The DNA was obtained through buccal swabs from the epithelial cells of the inner cheek, and then purified and ran through PCR. We employed 3 distinct primers that correspond to mutations in the genome that account for the elevated levels of circulating GDF-15 in the mother. As of current, the mother-daughter DNA is still under analysis for single-nucleotide polymorphisms, however recently published literature has suggested results similar to our hypothesis. M. Fejzo et al. shows that upregulated serum GDF-15 is primarily of fetal origin, and that maternal sensitivity to GDF15 increases the risk for developing HG. Additionally, the DNA coding variant GDF15 C211G was shown to elevate the risk of HG

Reconstructing seasonality in African bovids using dental microwear

March 21, 2024 12:00 AM
Authors: Auriana Dunn. Mentors: Kathryn Sokolowski. Insitution: University of Utah. Reconstructing the diet of extinct animals can help us understand how living species are suited to their environments, which can inform paleoecological and zooarchaeological research as well as modern species conservation. Seasonal variation in animals’ diets can further be used to reconstruct seasonality patterns in the past and understand how animals may vary their diet under future climate change. However, determining the diet of extinct species is challenging, and detecting seasonal changes in diet is even more so. Dental microwear texture analysis (DMTA) can be a tool to solve this problem. DMTA analyzes dental microwear by measuring the pits and scratches on teeth to determine what an animal consumed in the days and weeks before it died. This project examines the DMTA of modern African Bovidae species to determine if seasonal dietary changes can be observed. If a difference can be found in the dental microwear of specimens that died during different seasons, seasonal changes in diet can be inferred. Here, I gathered dental microwear data from 407 specimens across five modern studies and matched the data to the museum specimens’ date of death to determine whether it died in a wet or dry season. The analysis found that four of the Bovidae species examined in our study showed evidence of seasonal diet shifts in their DMTA data. Dental microwear can be useful in determining seasonal diets and season of death for specimens. This method can be applied to extinct Bovidae species to understand ancient ecosystems and the evolution of Bovidae dietary strategies.

Murine Model of Hepatitis Delta Virus-Associated Salivary Gland Impairment

March 21, 2024 12:00 AM
Authors: Alexander Romano, Matthew Hesterman, Rachel Hill, Melodie Weller. Mentors: Melodie Weller. Insitution: University of Utah. Sjogren’s Disease (SjD) is an autoimmune disease diagnosed by symptoms of reduced tear and saliva excretion, accumulation of lymphocyte foci in the salivary glands, and the occurrence of antibodies against Ro (SSA), La (SSB), and nuclear proteins. The cause of SjD is unknown, though previous studies have detected the sequence and antigens of Hepatitis Delta Virus (HDV) in the minor salivary gland acinar, ductal, and adipose cells of patients with SjD; without the typical presence of a Hepatitis B coinfection. In this study, murine models were transduced with Adeno-associated virus containing expression cassettes for Luciferase (control), small, large, or a combination of both small and large HDV antigens to evaluate the impact of HDV antigen expression on salivary gland function and SjD autoimmune disease development. After a ten- or four-month period, the models were analyzed. Findings included a significant increase of inflammation for samples expressing both small and large HDV antigens, a significant increase of anti-SSA(La) antibodies in samples expressing the short HDV antigen, and a correlation between increased overall inflammation and decreased overall saliva flow. Performing qPCR methods verified the amount of HDV in the submandibular glands and Illumina sequencing portrayed an increase in glycolysis and beta oxidation metabolism in models with detectible HDV sequence. The models showed significantly increased IgM expression in the HDV exposed murine models, without significant change of other antibodies. Future plans include an ELISA diagnostic assay to verify the antibody levels and further sequencing analysis. With this information we can build a better picture of the direct mechanisms of HDV-mediated changes in salivary gland dysfunction and determine the extent that HDV can inducing systemic SjD symptoms.

Using Past Ecosystems to Understand Modern Climate Change: A Case Study from Utah’s House Mountain Range

March 21, 2024 12:00 AM
Authors: Jane Damstedt, Kasey Cole. Mentors: Kasey Cole. Insitution: University of Utah. In this project, we are analyzing faunal remains recovered from Utah’s House Mountain Range in the Tubafore cave system to create a paleoecological baseline of life in that location over the past 1000 years. All animals have relatively consistent ecological tolerances and preferences, so comparing the data from the information obtained in this study with contemporary accounts of mammalian ecology in the same area will be useful in evaluating the role of anthropogenic climate change in mammalian ecosystems. In this project, I am identifying the animal remains to the lowest level of taxonomic classification possible to determine what kinds of species richness and environment were present at the time in which the animal was alive. Creating an accurate record of the animals found in this cave assemblage is critical because very little is known about the species richness of the Great Basin area. This data will then be stored and compared to modern zoological data, which came from online databases Actos and Vertnet. The information gathered from this project can be used to inform conservation and sustainability efforts aiming at preserving biodiversity in Central Utah’s Mountain Ranges.

Going Green in a General Chemistry Teaching Lab: Assessment of Learning Outcomes

March 21, 2024 12:00 AM
Authors: Cooper Bell-Hunley, Ming Yu, Emily Heider. Mentors: Emily Heider. Insitution: Utah Valley University. Green chemistry involves the redesign of chemical processes and products to reduce hazards to the environment and human health. Reconsidering the teaching curriculum with a view to embrace green chemistry can reduce costs in waste disposal and has the potential to improve accessibility. This research involves the redesign of qualitative analysis general chemistry experiment to eliminate the use of teratogenic mercury (Hg) and neurotoxic lead (Pb). Making this change creates a more inclusive laboratory since expectant mothers should not be exposed to mercury and therefore some students did not feel safe completing the previous version of the experiment. With any change in curriculum, it is important to consider the impact on learning outcomes that students can achieve. This research details the assessment of learning outcomes with a quasi-experimental design. Instructors in multiple general chemistry labs selected the qualitative analysis experiment (with or without Hg and Pb) and learning outcomes achieved were assessed following the experiment.

Nonequilibrium Thermodynamics of Voltage-Gated Ion Channels

March 21, 2024 12:00 AM
Authors: Ada Cottam Allen, Mikhael T Semaan. Mentors: Mikhael T Semaan. Insitution: University of Utah. Regularly buoyed from thermodynamic equilibrium by complex and fluctuating environments, living systems must continually respond and adapt to external stimuli. Recent tools from stochastic thermodynamics place concrete energetic and entropic bounds on these processes, for systems arbitrarily far from equilibrium both in and out of steady-state conditions, and thus reveal mechanisms by which these systems absorb and dissipate energy to function. Here, we leverage these tools to simulate and calculate the thermodynamic signatures of several models of sodium and potassium ion channels---channels crucial to propagating action potentials in mammalian neurons---as driven by biologically-realistic action potential spiking protocols. Thus uncovering their detailed energetic responses to such complex environmental conditions, these results enable detailed comparison between the thermodynamic functionality of each channel type with driving one would expect in-vivo. When applied to competing models of the same channel, these tools also provide additional criteria for model selection; to this end, we close by calculating expected ionic currents, directly facilitating comparison with dynamically-driven patch-clamp experiments.

Impact of Inducible Depletion of Sequestosome-1 (p62) From Endothelial Cells On Intrinsic Arterial Stiffness

March 21, 2024 12:00 AM
Authors: G. Colton Gardner, Lynasi Gapelu, Sohom Mookherjee, Sihem Boudina, J. David Symons. Mentors: J. David Symons. Insitution: University of Utah. With the prevalence of cardiovascular disease increasing world wide and its precise mechanisms remaining elusive, the need for novel treatments is urgent. Autophagy is a conserved process whereby dysregulated intracellular proteins are escorted to the lysosome for recycling. Emerging evidence indicates that autophagy is important in maintaining endothelial cell (EC) proteostasis and function. My laboratory showed that autophagy repression in adult mice ECs produces arterial dysfunction, and indexes of autophagy are repressed in ECs of older mice and humans which display concurrent EC dysfunction. Sequestosome 1 (p62) tethers proteins and enables their entry into the autophagic pathway. The contribution from EC p62 to cardiovascular and metabolic function is unknown and experiments are needed to investigate this. Thus, p62 will be depleted from ECs of adult male and female mice (p62iEC-/-) via tamoxifen regimen, and results will be compared to animals wherein EC p62 is intact (CON). The efficacy and specificity of EC p62 depletion will be evaluated in ECs and vascular smooth muscle by qPCR and immunoblotting. Three adjacent 1 mm thoracic aorta sections will be obtained 14 days after the tamoxifen regimen. The central aorta section will be used to measure intrinsic mechanical stiffness by wire myography, with the other two used to find lumen diameter and intimal medial thickness. These measurements will help create Stress vs. Strain curves and the Elastic Modulus, which will be compared between the groups to show the differences caused by p62 depletion. We expect p62 depletion from ECs to increase intrinsic aortic stiffness.

A Metagenomic Analysis the Microbial Composition of Apis mellifera Pollen Preserves throughout the Foraging Season

March 21, 2024 12:00 AM
Authors: Sydney Larsen. Mentors: Joshua Steffen. Insitution: University of Utah. Pollen preserves are crucial to maintaining Apis mellifera’s hive health. This pollen provides bees with a source of protein, amino acids, lipids, and other nutrients that are vital for larvae development (Dharampal et. Al, 2019). In addition to providing these essential nutrients, bee collected pollen also provides the hive with an excellent source of external pollen-borne microorganisms. These microbes provide a variety of benefits including serving as a major dietary requirement for larvae, assisting in biochemical processes such as bee bread fermentation, and assisting in bee resistance to pathogens (Gilliam, 1997). Despite the importance that these organisms play on bee health, there is currently little research on how the microbial composition of bee foraged pollen changes throughout the foraging season in response to abiotic and biotic factors. Rapid advancements in DNA metabarcoding approaches and DNA sequencing technologies have made the assessment of hive level foraging patterns easily accessible. We attempt to leverage the benefits of these new approaches to characterize how microbial composition in pollen provisions changes in relation to shifts in foraging preferences. Here we describe general patterns plant foraging behaviors for two hives across a single foraging season. In addition, we describe the variability of microbial diversity associated with pollen across this same time frame. Our initial description plant and microbial communities present in pollen provisions suggest that pollinator foraging preferences play a significant role in pollen associated microbial communities. This will allow for further research into how the presence of specific beneficial microbes is affected by changes in climate, floral availability, pathogen presence, etc..ReferencesDharampal, P. S., Carlson, C., Currie, C. R., & Steffan, S. A. (2019). Pollen-borne microbes shape bee fitness. Proceedings of the Royal Society B, 286(1904), 20182894.Gilliam, M. (1997). Identification and roles of non-pathogenic microflora associated with honey bees. FEMS Microbiology Letters, 155(1), 1–10. https://doi.org/10.1016/s0378-1097(97)00337-6

A Glance into the Origin of Life through the Lens of the DNA Repair Enzyme MutY from the Lost City Metagenomes

March 21, 2024 12:00 AM
Authors: My Nha Quyen Tran, Cindy Greaves. Mentors: Martin Horvath, Cindy Greaves. Insitution: University of Utah. I have been studying the DNA repair enzyme MutY found at the Lost City thermal field 3000 feet deep in the Atlantic Ocean with conditions similar to those that may have shaped the origin of life. With no sunlight and very little oxygen, life at the Lost City is driven by chemical transformations in rocks at extremely high levels of pH and temperature. DNA in all organisms strictly follows base pairing rules in which A pairs with T and G pairs with C. We all think of oxygen as beneficial, but it can cause damage to DNA. Oxidized guanine (OG) violates the base pairing rules and pairs with A. This causes mutations, which can lead to changes in the genetic information. The mutagenic potential of OG was a challenge that had to be solved early in the emergence of DNA-encoded life. The enzyme MutY functions in suppressing mutations and therefore protects us from developing cancer by finding and removing A from OG:A mispairs. In my effort to replicate conditions at the Lost City so as to explore how the DNA repair enzyme MutY evolved to function in this strange environment I need to purify the enzyme. I used DNA cloning to attach the MutY-encoding genes to a soluble bacterial protein called GST that hopefully will make it easier to purify the MutY proteins. Encouragingly, these fusion proteins expressed well in bacteria and appeared to be soluble. I am now exploring different conditions looking for optimal enzyme activity, which I predict to be different from what familiar bacteria can tolerate. Basic science research on how DNA repair enzymes adapted to the strange environment at the Lost City may inform future translational applications to treat and cure cancer and thus ensure a healthy society in Utah.

Synthesis and testing of hydrophobicly-modified pyridyl-aza crown ethers as chelators of rare earth elements.

March 21, 2024 12:00 AM
Authors: William Lee, Rishab Nayak, Cecilia Knapp, Camila Soderholm. Mentors: Ryan Stolley. Insitution: University of Utah. Recent publications have shown pyridine carboxylate functionalized aza-crown ethers coordinate strongly to a number of rare earth elements. Considering their strong coordination, we have modified these crown-ethers with a number of hydrophobic moieties to allow for adsorption to non-polar substrates to enable packed bed isolation of these elements to address the broad use and limited availability of these elements.

Information Anatomy Over Partition Space

March 21, 2024 12:00 AM
Authors: Nathan Jackson, Ryan James, James Crutchfield. Mentors: Mikhael Semaan. Insitution: University of Utah. Symbolic dynamics allows for modeling---and designing for---the effects of imperfectly measuring a time series of data, by partitioning into a finite number of possibilities. The resulting time series of discrete symbols is then made especially amenable to information-theoretic methods for understanding its temporal structure and correlation. In particular, as long as the partitioning scheme is generating, the resulting estimations for entropy rate---the rate at which the process creates information---converge to a measure of chaos in the underlying system, a dynamical invariant.However, the entropy rate is not sensitive to what kind of generating partition: colloquially, an instrument must be at least accurate enough, but can be more fine-grained as desired. In contrast, its breakdown into a piece which affects future measurements (“bound”) and a piece which does not (“ephemeral”) depends quite dramatically on the choice of generating partition. We ask, then: is there a canonical partitioning scheme for which the full suite of information measures relate to dynamical invariants?To tackle this, we simulate the well-known tent and logistic maps, sweeping over all two-boundary partitions, calculating the full information anatomies for each. We find that ephemeral and bound information are extremized by the single-boundary coarsest generating partition, suggesting a canonical role for the simplest “good enough” instrument. The remaining multivariate measures, meanwhile, reveal hitherto-unseen structure in the process of imperfect measurement.

The use of ecological niche modeling to characterize the microhabitat of oak hybrids (Quercus undulata) in Utah

March 21, 2024 12:00 AM
Authors: Cate Bateman, Carson Veazie, . Sydney Sandall. Mentors: Matt Ogburn. Insitution: Southern Utah University. Western Utah is home to two distinct species of oak, Gambel oak (Quercus gambelii) and Dixie live oak (Quercus turbinella), which can hybridize to form an intermediate species that has been named Quercus undulata. In spite of previous research on these shrubs, we are still unsure of how the hybrid has survived in small isolated locations well outside of the range of one parent species (Dixie live oak, which is restricted in Utah to Washington, Kane, and San Juan Counties). Our primary objective was to perform an ecological niche modeling assessment of Q. undulata within the Three Peaks Recreation Area. Our approach included collecting plot-level data to determine abiotic and biotic niche factors correlating with the presence/absence of Q. undulata, including slope, aspect, soil type, soil chemistry, vegetation cover, and other associated woody plant species. Our results have shown that Q. undulata populations have higher concentrations in south-facing slopes, potentially reflecting the climatic preferences of its Dixie live oak parent. Results also showed that both focal species, Q. undulata and Q. gambelii, prefer areas with shallow soil and rocky outcrops. We plan to continue data collection and our analysis of soil type and chemistry. These results will help us to better understand the evolutionary history and ecological requirements of this fascinating native Utah plant.

Isolation on Plant Growth promoting bacteria from the hybrid buffaloberry Shepherdia x utahensis ‘Torrey'

March 21, 2024 12:00 AM
Authors: Ty Wilson. Mentors: Amita Kaundal. Insitution: Utah State University. Climate-induced environmental stresses and the increased use of fertilizers to meet the increasing demand for food significantly threaten food production and soil health. In natural environments, microbes are vital to the growth and development of plants. Their presence in the soil allows for enormous flexibility and nutritional availability for plants, particularly those living in harsh conditions. A plant’s microbiome, especially the underground, plays a significant role in its growth and development and mitigates environmental stresses. Idaho and Utah are particularly challenging environments due to extreme temperatures and arid soil. However, despite these difficult environmental factors, the native plants of Utah and Idaho can thrive. Here, we are exploring the rhizosphere microbiome of Shepherdia x utahensis ‘Torrey,’ a hybrid of two highly drought-tolerant buffaloberry species, S. argentea and S. rotundifolia native to the Intermountain West region of the US to isolate plant growth promoting bacteria. In this study, we isolated drought-resistant plant growth-promoting microbes from the rhizosphere of hybrid buffaloberry. Root samples of hybrid buffaloberry were collected from three locations in Utah: the USU campus, Greenville Farm USU, and the USU botanical garden, Kaysville. The rhizosphere was removed from these root samples and pooled together. The bacteria were isolated on five different bacterial growth media twice. The isolated microbes were then purified using the streak plate method. Forty-six unique isolates were selected based on morphological characteristics and tested for four plant growth-promoting traits. Fourteen bacteria could show the ability to fix nitrogen fix, 18 produced a siderophore, 17 could solubilize phosphate, and 11 produced catalases. IAA production, ACC deaminase, and protease activity assays are in progress. All isolates will be identified by 16S rRNA Sanger sequencing.

Insane in the Membrane: Amino acid sequence evolution and conservation in vital protein complex in gram-negative bacteria

March 21, 2024 12:00 AM
Authors: Alexander Everett, David Bean, Jeremy W Bakelar, Randy L Klabacka. Mentors: Randy L Klabacka. Insitution: Utah Tech University. β-barrel assembly machinery (BAM) is a protein complex vital to cell survival in gram-negative bacteria that functions to insert proteins into the cell’s outer membrane. BamA, a protein composed of a membrane-bound beta barrel and several POTRA domains that protrude into the cytosol, is the primary subunit within BAM. It is suggested that BamA is conserved due to its widespread presence across the bacterial tree of life. Here we quantify the conservancy of BamA in 142 species of gram-negative bacteria from across the bacterial tree of life, with a focus on 120 species belonging to the order Enterobacterales. In addition, we compared the conservancy of BamA with other proteins with high and moderate levels of conservation in Enterobacterales. Lastly, we discuss regions of BamA that are of high conservation in the context of their potential as antibiotic targets.

Eolian Sediment as a Potential Soil Parent Material in Cache Valley

March 21, 2024 12:00 AM
Authors: Kylie Hansen. Mentors: Janis Boettinger. Insitution: Utah State University. Cache Valley, Utah, has unique soils due to environmental events such as Pleistocene pluvial Lake Bonneville. This lake extended about 20,000 square miles in Northern Utah, and its depletion left numerous shorelines, the most relevant being the Bonneville and Provo shorelines. These various water levels influence the geological formations in Cache Valley and the different characteristics of soil formation. An important soil-forming factor used to characterize varying soils is the parent material. Parent material is the original sediments the soil formed on and can be various things such as sediments deposited by gravity, streams, lake sediments, or wind. These different materials depend on the location and alter the soil properties. A dominant soil parent material in the Lake Bonneville area is sediment deposited by this lake. This type of parent material is identifiable by coarser-sized sediments, such as cobbles, gravel, and sand. This pattern is evident on terraces in Cache Valley’s lower soil layers, but the near-surface layers have fewer rock fragments and more fine sand, silt, and clay. This distinct difference in particle size leads to the question of what is the parent material source in the surface horizons of soil formed in Lake Bonneville deposits in Cache Valley. There is not much literature on this question and little documentation compares the soil profiles for different Lake Bonneville terrace levels (Bonneville shoreline compared to Provo shoreline). We hypothesize that the different particle sizes of parent material in the surface of soils formed dominantly in Lake Bonneville deposits is eolian sediment transported and deposited by wind. To determine this, we will sample soils across Cache Valley and analyze the fine and very fine sand sediments in plane-polarized and cross-polarized light. This process will identify various minerals within each soil horizon, showing possible differences in the upper and lower horizons. The minerals present in each soil will indicate the parent materials, allowing us to understand what is causing the different textured horizons in these soils and where the sediment originated from.

fr10 Evolution

March 21, 2024 12:00 AM
Authors: Reagan McKee, Vicente Fernández Lara, Jeremy Bakelar, Randy Klabacka, Dustin Kolste. Mentors: Randy Klabacka. Insitution: Utah Tech University. The capability to survive freezing temperatures is of crucial importance to ectothermic organisms inhabiting cold climates. The mechanisms that have evolved to minimalize the cellular damage incurred by freezing are of interest due to their applications in agriculture and medicine. fr10 is a gene identified in the wood frog (Rana sylvatica)that has been shown to reduce the cellular damage sustained in freezing temperatures. To date, fr10 has not been identified in any taxa beyond R. sylvatica and as such, the evolution of this novel gene remains ambiguous. Furthermore, the exact mechanism by which fr10 reduces freezing related damage has yet to be determined. We use bioinformatics scripts to scan 38 frog genomes to identify orthologs in divergent frog lineages across varying elevational and latitudinal gradients and examine the evolution of this novel gene. Understanding the evolutionary and ecological context of this gene can elucidate its function and may inform commercial and medical applications.

Using Technician Statistics For Productive Animal Care

March 21, 2024 12:00 AM
Authors: Grace Moore. Mentors: Aaron Olsen. Insitution: Utah State University. AbstractAnimal care technicians for research labs have many responsibilities in order to maintain the integrity of a research project. However, it is difficult to determine what tasks will require most of a technician’s time and effort. Thus, it is proposed that tracking what each individual does during a given shift can allow supervisors and technicians to create an efficient schedule of how they will work and provide a standard for individuals to meet every day. This project consists of tracking in detail what an animal care technician does in a given “shift”, including observation hours, handling and restraining, working in different biosafety levels, cleaning and prepping caging, and changing the caging. This data collection, over several months of work, finds relationships between tasks, the frequencies of being completed, and the time they take. The key tasks of an animal care technician are observing, providing nourishment, maintaining clean environments for both the researchers and the subjects, and maintaining supplies and accurate records. Additionally, many hours are dedicated solely to observing the animals to ensure their health and safety. Moreover, cleaning and prepping of caging or supplies are completed more than half of the time during a given shift. Finally, working with a given species may require more time to complete a task (such as cage changing or cage preparation) compared to another species despite the task being the same. If each technician were to track their tasks and create a profile of personal statistics, they would be able to easily determine how long a task should take. Moreover, a supervisor would be able to determine if a technician is working more efficiently or even falling behind during daily tasks. Overall, these findings could be used to incorporate better time management or planning for institutions to know what more time or resources may need to be devoted to in order to maintain a safe environment, provide exceptional care for the subjects, and follow every protocol.

Computational analysis of cyclic aminoborane complexes that exhibit potential to act as hydrogen storage molecules

March 21, 2024 12:00 AM
Authors: Amy Richards, Caleb Shelton, Jordan Colmenero, Mason Warenski. Mentors: Diana Reese. Insitution: Utah Tech University. Hydrogen gas has potential to be an excellent form of clean energy; unfortunately, hydrogen gas is difficult to store safely in its elemental form. Consequently, this research project investigated cyclic aminoborane complexes in which hydrogen (H2) can be safely stored. Utilizing computational methods, molecular dynamics simulations of four cyclic aminoborane compounds were performed using Q-CHEM 6.0, with a t-HCTHh density functional and cc-pVDZ basis set. Results were visualized using Molden 6.7 and VMD 1.9.3 then plotted using Gnuplot 5.2.8. Molecules selected for the investigation involve two constitutional isomers for both the 3- and 4- membered ring cyclic aminoborane complexes. The four molecules studied were (CH2)2NHBH3, (CH2)2BHNH3, (CH2)3NHBH3, and (CH2)3BHNH3, (hereafter 3N-B, 3B-N, 4N-B, 4B-N). Motions inherent in these molecules exhibited surprising differences. Specifically, in the 3-membered rings, the terminal borane (3N-B) exhibited more motion than the terminal amine (3B-N); however in the 4-membered rings (4N-B and 4B-N) the opposite occurred. Differences in these and other motions were quantified and qualified with respect to each molecule to gather data relevant to hydrogen storage potential.

Unveiling Cryptic Avifauna Diversity Using Nanopore DNA Sequencing: A Case Study in the Passerine Genus Emberiza

March 21, 2024 12:00 AM
Authors: Ainsley E Parkins, Sylvia Lee, Elizabeth J Heath, Thomas Petitjean, Kyle Cink, Kyle Kittelberger, Cagan Sekercioglou, Rodolfo S Probst. Mentors: Rodolfo S Probst. Insitution: University of Utah. Biodiversity loss poses a significant threat, requiring accurate species assessment and conservation strategies. Non-invasive and cost-effective techniques should be prioritized, especially when dealing with threatened vertebrate fauna. By focusing on cryptic Eastern European species within the genus Emberiza (Passeriformes: Emberizidae), we designed an affordable molecular pipeline (including DNA primers and bioinformatics) integrating DNA barcoding with Nanopore sequencing to address species boundaries and provide conservation information for avifauna diversity. We conducted non-invasive DNA extractions from individual feathers of 192 specimens collected in the Aras River Riparian Corridor (ARRC), an important ecological hotspot in Turkey. By targeting the cytochrome oxidase subunit I (CO1) region, our goal was to differentiate Emberiza taxa and identify potential cryptic lineages while using cutting-edge next-generation sequencing (NGS) of multiplexed specimens with portable Oxford Nanopore Technologies. Our focal study examined boundaries in Emberiza subspecies (E. shoeniclus shoeniclus and E. shoeniclus caspia) with subtle morphological differences, utilizing DNA barcoding and Nanopore sequencing. We obtained 182 Emberiza DNA barcodes. Clustering analysis recovered a paraphyletic assemblage (n=32) and a clade, the latter recovering majority of the barcodes (n=150), separated by at least 8% genetic difference. In both cases, we observed a mixture of barcodes from the nominal subspecies and Caspian subspecies, suggesting that cryptic morphological characteristics are not reflected in genetic separation. Our results also suggest putative cryptic Emberiza species, highlighting the importance of the ARRC for conserving avian diversity. We demonstrate that our pipeline, integrating real-time Nanopore sequencing with non-invasive DNA barcoding, can be used for conservation initiatives (particularly aiding cryptic species identification). This study expands our knowledge of avian diversity and highlights the potential of NGS DNA barcodes as a powerful tool for aiding conservation efforts amidst biodiversity loss.

University Course Timetabling: From Sticky Notes to Automation

March 21, 2024 12:00 AM
Authors: Alyssa Muller, Russ Ross. Mentors: Russ Ross. Insitution: Utah Tech University. University course timetabling assigns rooms and times to courses, considering instructor availability, curriculum conflicts, and quality of life considerations. Computing an optimal solution is computationally intractable. Researchers have refined approximation algorithms that yield far better results than the conventional pencil-and-paper approach used at many universities, including our own. Transitioning to an automated system can be disruptive and poses both real and perceived risks to an institution. The implicit knowledge that humans bring to the problem is hard to fully capture within formal rules that a computer can understand. Our research addresses the impedance mismatch between abstract solutions and the messy real world.In this project we build on prior research to fit the specific needs of our university. We will pilot our system with a set of departments in parallel with the traditional by hand process. We will analyze outcome quality through subjective assessment and quantitative comparison between human and machine generated timetables.

Synthesis and Characterization of Novel Pterostilbene Derivatives for Potential use as Therapeutics​

March 21, 2024 12:00 AM
Authors: Ashley Staten. Mentors: Jennifer Meyer. Insitution: Utah Tech University. Pterostilbene, a natural product found in blueberries and nuts, has been shown to be multifunctional. In low doses, it has been shown to be a potent antioxidant, while in higher doses, it has been shown to reduce cell proliferation, induce autophagy, and increase apoptosis. Recent literature has indicated that derivatives of pterostilbene can improve the functionality of pterostilbene in both cancer cell viability (reduction) and antioxidant capacity (increase). Previously, our group has synthesized and characterized the antioxidant capacity of a select group of pterostilbene derivatives, which have been functionalized to contain an additional alcohol and amine group. Most recently, we have synthesized a derivative containing benzylamine as the amine. This amine was chosen as benzylamine and drugs functionalized with benzylamine groups have been shown to have antiapoptotic properties. Currently, we aim to further characterize this novel pterostilbene derivative as we believe it has the potential to be utilized as a therapeutic in various disease states such as cancer and type 2 diabetes.

Rock Column Displacement in Zion National Park: A statistical Analysis

March 21, 2024 12:00 AM
Authors: Michael Orr. Mentors: Md Sazib Hasan, Alex Tye. Insitution: Utah Tech University. Every year Landslides claim lives and cause billions in property damage. Zion National Park in Southwestern Utah has been monitoring a precarious rock column contained within the parks borders since 2019. The results of this rockfall will be damage to the land and historical structures located in the fall area. The data are collected by two instruments called vibrating-wire crackmeters that are connected from the cliff face to the pillar—these are electronic and provide a continuous feed of distance measurements. The project will be focused on analyzing a 4-year record of displacement of a precarious rock pillar from the adjacent cliff face from which it will eventually separate and topple onto a slope below. We will also be analyzing the environmental factors causing the movement of the rock column. Results of this modeling will help us better understand the driving forces behind rockfalls, possibly helping to mitigate future damage.

Introduced population of a unisexual lizard species in Southern Utah

March 21, 2024 12:00 AM
Authors: Vicente Fernández Lara, Reagan McKee, Randy Klabacka, Angelina Romero. Mentors: Randy Klabacka. Insitution: Utah Tech University. Aspidoscelis (family: Teiidae) is a genus of lizards with many parthenogenic species found in North America. The parthenogenic species reproduce asexually, meaning all individuals in these species are female. The native range of Aspidoscelis neomexicanus (the New Mexico whiptail) is within the Rio Grande basin in New Mexico and Trans Pecos Texas. It has been reported outside its foreign range in northern Utah (Salt Lake area) as an introduced/invasive species, but has never been reported in southern Utah. We captured three individuals in Washington County that have the superficial diagnostic characters of Aspidoscelis neomexicanus. Using molecular genetics, we will test the taxonomic identity of this species and use phylogenetic analysis to determine the source population from its native range.

Hollow hair and how its structure helps big game animals thermoregulate

March 21, 2024 12:00 AM
Authors: Taylor Millett, Wendy Schatzberg, Samuel Tobler. Mentors: Wendy Schatzberg. Insitution: Utah Tech University. This study delves into the intriguing world of hollow hair strands in animals, focusing on their role in thermoregulation, and the ability to maintain a stable body temperature in the face of fluctuating external conditions. While the Pronghorn antelope is widely known for having hollow hair strands among hunters and conservationists, little is known about their internal structure. Employing scanning electron microscopy (SEM), we explored the inner composition of these hollow hair strands and their contribution to thermoregulation. Our investigation centered on several notable North American big game animals, including Mule deer, Rocky Mountain elk, and Pronghorn antelope, all of which exhibit a unique adaptation: the transition between summer and winter coats. Through SEM analysis, we measured and compared the winter and summer coats of these animals to gain insights into how they effectively regulate their body temperatures during the extremes of hot summers and cold winters. These seasonal changes manifest in alterations in fur and hair thickness and length. Under the microscope, we unveiled the distinct topography of the inner structure of individual hair strands. Notably, our findings revealed that the inner hair structure contains larger hollow pockets in the winter coats of these animals. Our research thus sheds light on the role of these hollow structures in heat transfer and their pivotal contribution to the thermoregulation abilities of these remarkable creatures, expanding our understanding of their unique adaptations.