Fine Arts
Genomic Analysis of Male Reproductive Skew in Bornean and Sumatran Orangutans
Authors: Gabriel Hammond, Rebecca Seegraber, Tim Webster. Mentors: Tim Webster. Insitution: University of Utah. Bornean and Sumatran orangutans demonstrate pronounced differences in their social behavior. All orangutans are more solitary than other apes and monkeys, but Bornean orangutans are even less social than their Sumatran counterparts. This contrast is generally attributed to differences in forest productivity between the two islands, as feeding competition is a major cost to social behavior. Variation in sociality between the two species directly impacts male reproductive skew, or the extent to which males can monopolize reproductive success. Sex-biased demographic phenomena such as male reproductive skew can be reconstructed across a lineage’s history by comparing genetic variation across different regions of the genome. Autosomes and the X chromosome are inherited in different proportions, in a population with an equal sex ratio, four autosome copies will be passed down for every three X chromosomes. Deviations in genetic diversity from this expected ratio can be indications of sex biased demographic events. This project is leveraging differential inheritance of chromosomes to explore the role of orangutan socioecology in shaping male reproductive strategies through genomic analysis of reproductive skew across Bornean and Sumatran orangutans.
The Relationship Between Sleep, Attachment, and Social Support
Authors: Kendra Johnson. Mentors: Dannelle Larsen-Rife. Insitution: Utah Tech University. This study's objective is to examine how sleep quality is related to attachment and any moderating effect from social support. Sleep quality affects multiple aspects of life including physical and mental health. About 40% of the population is affected by sleep complaints (Palagini et al., 2018). Over time, disturbed sleep can become a risk factor for mental illness and substance use disorders (Adams et al., 2014). According to Gur-Yaish et al., (2020), negative interactions related to attachment disturbances negatively affected sleep quality. Individuals with insecure attachment may be more prone to insomnia and sleep disturbances (Palagini et al., 2018). People with anxious attachment have difficulty trusting that others will be there for them when they are in need. Insecure attachment is measured on two scales: anxious and avoidant. Because of this fear, people with insecure attachment may engage in behaviors intended to reassure them of the other person’s trustworthiness. An individual with avoidant attachment tends to resist close relationships, fearing that others are not reliable (Bowlby 1982). Adults in romantic relationships tend to behave similarly to children and mothers when it comes to attachment pairing (Fraley & Shaver, 1998). When people have insecure attachment, they may be highly activated by relationship ruptures, leaving them anxious and vulnerable to poor sleep quality. The resulting poor sleep quality may be moderated by high levels of outside social support, though with high attachment avoidance, the benefits of social support are less influential. Participants (N = 94) completed the Experiences in Close Relationships-Revised (ECR-RS) scale to measure attachment, the Pittsburgh Sleep Quality Index (PSQI), and the Social Support Questionnaire-Short Form (SSQ6). Findings reveal that though the correlation between insecure attachment and sleep was small, the addition of social support revealed some interesting patterns that give insight to the relationship between attachment, sleep, and the effects of social support.
The utility of ChatGPT in subspecialty consultation for patients (pts) with metastatic genitourinary (GU) cancer.
Authors: Ayana Srivastava, Gliceida Galarza Fortuna, Beverly Chigarira, Emre Dal, Chadi Hage Chehade, Georges Gebrael, Arshit Narang, Neeraj Agarwal, Umang Swami, Haoran Li. Mentors: Neeraj Agarwal. Insitution: University of Utah. The utility of ChatGPT in subspecialty consultation for patients (pts) with metastatic genitourinary (GU) cancer.Ayana Srivastava, Gliceida Galarza Fortuna, Beverly Chigarira, Emre Dal, Chadi Hage Chehade, Georges Gebrael, Arshit Narang, Neeraj Agarwal, Umang Swami, Haoran LiHuntsman Cancer Institute at the University of Utah, Salt Lake City, UT;University of Kansas Cancer Center, Westwood, KSBackground:Cancer management requires a multidisciplinary approach, often requiring medical consultation from subspecialists. With the advent of artificial intelligence (AI) technologies like ChatGPT, it is hypothesized that these tools may help expedite the consultation process. This study aimed to assess the efficacy of ChatGPT in providing guideline-based sub-specialty recommendations for managing pts with metastatic GU cancer.Methods:In this single-institution, IRB-approved, retrospective, proof-of-concept study, pts with metastatic GU cancer over the past 3 years were screened. Those with at least one consultation referral to subspecialty clinics were randomly selected. ChatGPT 3.5 was given the most recent clinic note that triggered sub-specialty consultation. The AI tool was then asked to provide an assessment and plan. Two physicians independently assessed the accuracy of diagnoses made by ChatGPT and subspecialty physicians. The primary outcome was the consistency of ChatGPT recommendations with those of subspecialty physicians. Secondary Outcomes included potential time saved by using ChatGPT and comparison of medical decision-making (MDM) complexity levels between ChatGPT and subspecialty physicians.Results:A total of 39 pts were included. Their primary diagnoses included prostate cancer (51.3%), bladder cancer (23.1%) and kidney cancer (15.4%). The referred subspecialty clinic included cardiology (33.3%), hematology (17.9%), hepatology (2.6 %), hospice (10.3%), neurology (12.8%), pulmonary (15.4 %), and rheumatology (7.7%). The average waiting time for pts to be seen in subspecialty clinics was 44.9 days (SD = 42.4). Of 39 patient’s charts reviewed by ChatGPT, 30/39 (76.9%) had the same diagnosis with consultant sub-specialties. The average diagnoses made by ChatGPT were 8.2, compared with 3.4 made by sub-specialty physicians (p < 0.0001). The accuracy of diagnoses made by ChatGPT was the same, higher, and lower than human physicians in 10 (33.3%), 3 (10%), and 17 (56.7%) cases, respectively. Consistency of treatment plans between ChatGPT and physicians was found in 18 cases (46.2%). ChatGPT recommended additional workup in 32 cases (85.1%). The average number of words written in consultation notes by ChatGPT was 362.7 (SD = 72.9), which was significantly greater than subspecialty physicians (n = 224.7, p < 0.0001).Conclusions:These hypothesis-generating data suggest the potential utility of ChatGPT to assist medical oncologists in managing increasingly complex pts with metastatic cancer. Further studies are needed to validate our findings.
Assessing Risk Authoritarian Parenting and Adult Coping
Authors: Hunter Mitchell, Grace Carsey, Maria Balaceanu, Peg Bird, Bridger Lisonbee, Dannelle Larsen-Rife. Mentors: John Jones. Insitution: Utah Tech University. Early experiences in the home have long-term effects on health and well-being. This study will examine the connections between parenting styles and coping mechanisms, shedding light on their implications for child development and adult mental health and well-being. Parenting styles looked at in this study, specifically authoritarian has varied views on expectations, discipline, and rewards (Doepke & Zilibotti, 2017). Parenting styles have been shown to impact how children express themselves, and more specifically their expression of anger (Radomir-Beliţoiu, 2019). The expression of anger may indicate a deficiency in healthy coping skills. When individuals are found without healthy ways of coping, they become increasingly vulnerable to mental health disorders and poor relationship satisfaction. Based on our current understanding we believe that an authoritarian parenting style will be positively correlated with unhealthy coping mechanisms such as avoidance, substance use, and self-criticism. Adult participants (N = 100) varying in ethnicity and age will be recruited to complete the Brief Cope Questionnaire (Carver, 1997) and an adaptive version of the Parenting Styles and Dimensions Questionnaire (PSDQ; Robinson, Mandleco, Olsen, & Hart, 2001) to assess their parent's style of parenting and their ability to cope with challenges. We will run an ANOVA on the collected data using SPSS. We expect to see a correlation between parenting styles and children’s coping skills. It is anticipated that there will be a strong positive correlation in unhealthy coping skills and parental strategies. This study may suggest the importance of educating children and young adults in healthier coping skills and adults in healthy parenting strategies. This education may aid in reducing the frequency and intensity of mental health crisis in adults.
The Effects of State Anxiety on Face Identification
Authors: Patrick R Davies II. Mentors: Acacia Overono. Insitution: Utah Valley University. While there is a dedicated area of the brain for recognizing faces, the efficacy of recognition tasks can vary depending on the context under which they’re performed. The existing literature is undecided on whether anxiety helps or harms tasks relating to emotional content recognition, and some studies have taken steps into researching memory as an additional layer to these recognition tasks. A preliminary study was performed with 16 participants using virtual reality to study the effects of acute anxiety on the ability to correctly identify faces. Participants played either a brief horror game or a brief virtual sandbox in order to induce a desired emotional state, then were asked to complete a brief paired-face identification paradigm. Initial results show that anxiety strengthens identification of neutral emotionally-valent face pairs. Further results may clarify the relationship between anxiety and face identification processes.
Gambel Oak Acorns as a Food Resource in the Great Basin, Colorado Plateau, and Southwest
Authors: Sophia Dodge. Mentors: Alex Greenwald. Insitution: University of Utah. This project seeks to address the understudied presence of Gambel Oak acorns in the archaeological record of the Great Basin, Colorado Plateau, and Southwest regions. While ethnographic data and historical records suggest that Native peoples in this area consumed some Gambel Oak acorns, their recognition in archaeological contexts has been limited. This study aims to assess the viability of methodologies for identifying macrobotanical acorn remains, shedding light on their utilization across different time scales, especially as fallback crops during resource shortages, such as climate shifts. Through experimental methods like burning, parching, and midden simulation we will determine how these methods impact the identifiability of acorns. The research holds significance for our understanding of past human responses to climate change and the ongoing struggle for Indigenous food sovereignty, providing valuable insights into sustainable food sources for the future.
Cryopreservation: The Chilly Future of Biobanking
Authors: Jared Barrot, Mackenzie Burr, Isaac Packer, Peyton Worley, Delaney Anderson, Jack Davis, Jeffrey Okojie, Ken Dixon. Mentors: Jared Barrott. Insitution: Brigham Young University. In cancer diagnosis, drug testing, and treatment, analysis is done almost exclusively on formalin-fixed paraffin-embedded (FFPE) tissue samples, a process known to cause chemical cross-linking, DNA fragmentation, and degradation. With the push for genetic testing and personalized medicine, cryopreservation of tissue samples has started to gain traction in the research community. We utilized FFPE samples and cryopreserved samples, extracted DNA, and compared the samples using three criteria: DNA purity, quality, and yield. DNA yield, measured on nanograms of DNA to milligrams of tissue basis, demonstrated a five times the yield in cryopreserved samples than in FFPE. DNA purity did not show significant differences between a cryopreserved tissue sample versus a FFPE tissue sample, confirming valid use of FFPE storage methods if purity is the only factor; however, DNA quality was significantly better in cryopreserved tissue samples, with nearly twice the DNA quality number (DQN) than FFPE samples demonstrated, with significant portions of longer base pair DNA fragments present, widening the range of molecular applications of the sample. These cryopreserved tissues provide higher DNA quality, a higher percentage of significantly longer DNA fragments, and increased DNA yield from individual samples, confirming that cryopreservation is a better option than FFPE when it comes to choosing tissue preservation and storage methods. More molecular assays and tests can be run, and smaller samples are necessary when utilizing cryopreservation, proving it to be a better option than the “gold standard” of FFPE, particularly in regards to cancer diagnosis, drug testing, and treatment exploration.
From Self-Critique to Self-Care: Examining the Links Between Perfectionism and Self-Compassion
Authors: Peg Bird, Maria Balaceanu, Grace Carsey, Tiffanee Suhaka, Hunter Mitchell, Ives Hong, Tara Caplin, Ed Wu, John T Jones, Dannelle Larsen-Rife. Mentors: John T Jones. Insitution: Utah Tech University. This study examines the relationship between perfectionism and self-compassion. Perfectionism may be beneficial, but often promotes unrealistically high self-imposed standards, a preoccupation with making mistakes, and a compulsivity toward order, leading to self-criticism and self-loathing. Perfectionism results in persistent feelings of failure, indecision, procrastination, and shame, which negatively impact relationships, work-life satisfaction, and overall well-being (Enns et al., 2001; Frost et al., 1993). Self-compassion is directing warmth and care toward oneself during times of suffering and comprises three core components: self-kindness (offering oneself warmth during adversity), common humanity (acknowledging shared suffering), and mindfulness (approaching the experience of pain with presence and curiosity) (Neff, 2003). Self-compassion is associated with mental health and well-being, including a stable sense of self-worth, increased resilience, life satisfaction, and perspective-taking. Furthermore, self-compassion negatively correlates with anxiety and depression, reduced fear of failure, perfectionism, and self-criticism (Barnard et al., 2011; Neff, 2003; Neff et al., 2006). This correlational study will recruit approximately 100 adult participants to evaluate associations between perfectionism and self-compassion. Participants will complete the Frost Multidimensional Perfectionism Scale and the Self-Compassion Scale (Frost et al., 1990; Neff, 2003). We anticipate a negative correlation between self-compassion and perfectionism, with higher levels of self-compassion corresponding with lower levels of perfectionism. If this prediction is supported by the data, the study’s outcomes will extend existing research on the potentially deleterious effects of perfectionism and pave the way for the development of interventions aimed at improving mental health outcomes among individuals adversely impacted by this trait.
Functional Near-Infrared Spectroscopy and Dementia
Authors: Natalia Rubio, Madison Farrer. Mentors: Christopher Anderson. Insitution: Utah Valley University. Functional Near-Infrared Spectroscopy (fNIRS) is a neuroimaging technique used to monitor brain activity by measuring the changes in blood oxygenation levels, especially when presented with stimuli or given tasks. This is due to the principle that active brain regions require more oxygen, resulting in changes of blood flow and concentrations of hemoglobin. These observable results are achieved by diodes placed on the surface of the scalp that emit near-infrared (NIR) light into the skull. The absorption of this light by the hemoglobin in the brain’s blood vessels is then detected, localizing neural activity. Due to its portability and cost-efficient nature, fNIRS is being widely used across various fields of research and clinical applications whereas other neuroimaging methods might be less feasible or practical. Psychologists and neuroscientists are able to utilize fNIRS to understand how different regions of the brain are involved in various cognitive processes. It has been used in studying conditions like Alzheimer's disease, stroke, traumatic brain injury, autism, schizophrenia, mood disorders, and dementia. In the context of dementia research, fNIRS has emerged as a promising tool . While fNIRS has a low spatial resolution with measurements restricted to the outer cortex of the brain, it enables the study of the progression of dementia by providing real-time data and offering relative tolerance to subject motion. In fact, a neuro-clinic in Provo, Utah (Cognitive FX) has been studying the use of this fNIRS technique on patients with dementia while they perform language tasks. Although no patient data will be used in this study, the use of fNIRS as a technique to learn about the progression of dementia is noteworthy. Therefore, following IRB approval I will perform semi-structured qualitative interviews with two neuro-technicians using fNIRS in this clinic. Items will focus on the strengths and challenges of using fNIRS with dementia patients. Additionally, I will shadow these technicians to gain hands-on experience. Qualitative results will be analyzed and presented. It is anticipated that this research project will raise awareness of the use of fNIRS as a technique in neuroscience as well as its potential to benefit those with dementia.
Combined Inhibition of RAF, MEK, and FAK Attenuates Melanoma Brain Metastases and Prolongs Survival in Preclinical Models
Authors: Ana Paulina Medellin-Alvarez, Jared Almazan, Tursun Turapov, David A. Kircher, Karly A. Stanley, Gennie L. Parkman, MiKaela N. Field, Katie M. Culver, Silvia Coma, Jonathan A. Pachter, Howard Colman, Sheri L. Holmen. Mentors: Sheri Holmen. Insitution: University of Utah. Despite promising results from recent FDA-approved therapies, many advanced melanoma patients develop resistance to both immunotherapy and targeted therapy. A common resistance mechanism to targeted therapy is upregulation of the PI3K/AKT signaling pathway, which has also been shown to promote the development of melanoma brain metastases. Historically, AKT inhibitors have failed in the clinic due to their limited efficacy or intolerable toxicity. Proteomic analysis comparing non-metastatic vs brain metastatic primary tumors in mice revealed focal adhesion kinase (FAK) as an AKT1 specific effector and a potential alternative therapeutic target. FAK is a non-receptor tyrosine kinase that localizes primarily to focal adhesions to regulate cell migration. To determine whether targeting FAK alone or in combination with the RAF/MEK inhibitor avutometinib reduces brain metastases and prolongs survival, we utilized both autochthonous and syngeneic melanoma mouse models. Mice with either subcutaneous tumors or established brain metastases were treated with FAK inhibitor, RAF/MEK inhibitor, or the combination of FAK and RAF/MEK inhibitors. Each cohort was assessed for tumor onset, growth, metastasis, and survival. Our results show that combined RAF/MEK/FAK inhibition significantly delays tumor onset, causes regression of established tumors, prevents the development of brain metastases, promotes the regression of established brain metastases, and prolongs survival. In addition, patient-derived BRAF V600E melanoma xenograft mouse models resistant to the BRAF inhibitor dabrafenib and the MEK inhibitor trametinib, were sensitive to combined RAF/MEK/FAK blockade. The addition of the BRAF inhibitor encorafenib to these models further enhanced the effect on tumor growth. These results support the initiation of a clinical trial evaluating the efficacy of the RAF/MEK inhibitor avutometinib in combination with the FAK inhibitor defactinib in patients with brain metastases from cutaneous melanoma. Additionally, we are assessing non-canonical roles of FAK in modulating the tumor microenvironment to determine whether avutometinib and defactinib also enhance the efficacy of immune checkpoint inhibition in this disease.
Drawing on Memory
Authors: Corin Marsh, Acacia Overono. Mentors: Acacia Overono. Insitution: Utah Valley University. A variety of memorization techniques have been shown to enhance the ability to recall important information. While many of these techniques focus on repetition and retrieval of verbal information, the drawing superiority effect (DSE, Wammes et al., 2016) is a phenomenon where drawing leads to better recall compared to re-writing. The present study investigates the extent of these findings by combining the DSE with retrieval practice. This experiment utilized a within-subjects, single-blind design consisting of 32 undergraduate students ranging in age from 18 to 42. Participants were tasked with learning 20 vocabulary terms through a guided slideshow, then studied terms through; reading definitions (verbal restudy), viewing images of the definitions (visual restudy), writing definitions (verbal retrieval), and drawing definitions from memory (DSE with retrieval). After a brief distractor task, participants were tested on their recall of the definitions. Finally, subjects completed a shortened version of the Vividness of Visual Imagery Questionnaire (VVIQ) and a funnel debrief. Preliminary analyses using a repeated measures ANOVA revealed that re-reading was the study method that resulted in the highest recall scores (M = .57) compared to all other conditions (F (3, 93) = 14.9, p < .001, ηp2 = .324). Further — VVIQ ability showed no significant correlation with participant scores for any of the study methods. These results indicate that re-reading was a more effective study strategy for memorizing vocabulary terms with a short delay when compared to viewing images, writing definitions, and drawing definitions from memory. Future work will examine how longer delays and providing feedback influence may modulate the benefits of re-reading, drawing, and retrieval as study strategies. Keywords: drawing superiority effect, retrieval practice, memory, VVIQ
"Am I a good student?": Examining Motivation Style Influences on Coping Strategies to Perceived Academic Failure and Self-Efficacy
Authors: Broden Lund, John Jones. Mentors: John Jones. Insitution: Utah Tech University. Pursuing higher education credentials involves a significant investment of money, time, and energy. For many, this investment fails to pay off when students abandon their studies prior to graduation. Identifying factors that influence persistence to graduation has thus been the subject of a good deal of past research. The aim of this ongoing study is to explore the interaction between motivation type, responses to failure, and self-efficacy, on persistence among students at different stages of their academic careers. Participants will be 100 college students currently enrolled at a mid-sized university in the United States. Participants will complete measures of academic motivation, coping strategies in response to failure, and self-efficacy. We predict that the further a student progresses the more intrinsically motivated they will tend to be, and that this shift in motivation will be accompanied by increasing reliance on problem-focused coping and increased self-efficacy. Our results have the potential to provide a more nuanced understanding of the role intrinsic motivation plays in student success. Implications for students, parents, teachers, and administrators will also be considered.
The Newborn Behavioral Observation (NBO) and Its Impact on Early Relationships, Postpartum Depression, and Infant Outcomes
Authors: Tara Caplin, Tiffanee Suhaka, Maria Balaceanu, Peg Bird, Dannelle Larsen-Rife. Mentors: Dannelle Larsen-Rife. Insitution: Utah Tech University. Early parent-child interactions have a profound impact on the developing brain, influencing lifelong emotional and social well-being. This review evaluates the Newborn Behavioral Observation (NBO), a relationship-based neurobehavioral approach for families and infants three months old and younger. The NBO supports newborns, caregiver’s, and families by providing individualized information on their infants' behavior and competencies. It facilitates communication and intersubjectivity between infants and caregivers during a critical developmental period, while reducing maternal postpartum depression (PPD). Research on the association between the NBO, PPD, and infant neurodevelopment is reviewed and evaluated in high-risk populations. Although evidence supports approaches like the NBO, they are not yet standard in early intervention due to clinicians' lack of training in infant mental health. The NBO is a foundational tool for cultivating positive early relationships with beneficial implications for clinician standard care of newborns and families. Keywords: Newborn Behavioral Observation (NBO), early relationships, postpartum depression (PPD), infant development, relationship-based, early intervention.
When One is Loved: Attachment Security and Relationship Quality
Authors: Maria Balaceanu, Dannelle Larsen-Rife, Tara Caplin, Peg Bird, Grace Carsey, Tiffanee Suhaka. Mentors: Dannelle Larsen-Rife. Insitution: Utah Tech University. Attachment theory provides a framework for understanding how early experiences with caregivers influence individuals' emotional and relational development throughout their lives. In addition to understanding how an individual interacts with close others, attachment predicts relationship satisfaction (Gardner et al., 2020). Individuals with secure attachments demonstrate greater adaptability in coping and regulating their emotions, leading to improved socio-emotional well-being. In contrast, those with insecure attachment styles tend to encounter difficulties in socio-emotional adjustment (Gardner et al., 2020). This study will examine how insecure attachment is associated with romantic relationship dissatisfaction, specifically those lasting five years or longer. We focus exclusively on romantic relationships lasting five years or more because in adult relationships, each partner serves as an attachment figure for the other (Diamond et al., 2008). Therefore, spouses have the potential to increase each other's attachment security. This means an initially insecure individual can develop earned secure attachment with their spouse's support. Approximately 300 diverse participants over the age of 18 will be recruited for the study. The Relationship Structures Questionnaire (ECR-RS; Fraley et al., 2011) will assess insecure attachment. The Relationship Assessment Scale (Hendrick, 1988) will assess satisfaction. It is expected insecure attachment will be correlated with lower relationship satisfaction with a romantic partner of five years or longer. Results of the analyses will be presented.
Visualizing the impact of the Arab Spring on Women Empowerment in the Middle East region.
Authors: Mary Harris. Mentors: Joshua Gubler. Insitution: Brigham Young University. Middle Eastern governments typically score at or near the bottom of indices measuring women’s rights and political participation. The Middle East also contains a large saturation of authoritarian regimes. The Arab Spring challenged these regimes' structures and included vast female participation, but there is little existing research to understand the Spring's impact on women's participation and empowerment in the region. This study aims to add to the research by gathering data from the Arab Barometer to plot public opinion surveys before, during, and after the Arab Spring for a variety of countries in the Middle East and North Africa region. A difference on difference t-test shows the statistical difference of change in opinion before and during the Arab Spring. Twenty semi-structured interviews (conducted in Jordan in 2022) supplemented the quantitative analysis attempting to show the causation between the Arab Spring and the growth in public opinion toward women's empowerment. These are conducted under the hypothesis that: Women’s participation in the Arab Spring improved public opinion towards women’s empowerment in the region. The quantitative analysis illustrates a correlation between the Arab Spring and opinions of women's empowerment, but the shifts of opinions are both negative and positive. The data suggests that the negative impact is connected with the second half of the Arab Spring when the governments were subject to more instability. The interview's results differ from the hypothesis and illustrate little connection between the Arab Spring and public opinion of women's empowerment. These results are affected by the lack of movement in Jordan during the Arab Spring. More research is needed to understand the causation of such a phenomenon in other countries.
Investigating the Role of FBXO21 in Hematopoietic Malignancy
Authors: Danielle Alvarado, Kasidy Weber, Shannon Buckley. Mentors: Shannon Buckley. Insitution: University of Utah. The ubiquitin-proteasome system (UPS) plays a critical role in cancer by regulating the degradation of key proteins involved in cell cycle control, DNA repair, apoptosis, and signaling pathways, making it a crucial mechanism for maintaining cellular homeostasis and preventingtumor development and progression. The expression levels of F-box ubiquitin E3 ligase, FBXO21, correlates with patient survival in several types of cancer, suggesting a role in tumorgenesis. We have previously shown silencing FBXO21 in acute myeloid leukemia (AML) cell lines and patient samples leads to differentiation, slowed tumor progression, increased chemotherapy sensitivity, and altered cytokine signaling. Further, we found that FBXO21 ubiquitinates p85α, a regulatory part of the phosphoinositide 3-kinase (PI3K) pathway, for degradation resulting in altered PI3K signaling. Although PI3K inhibitors are used in cancertreatment, issues like off-target effects, dose-limiting toxicities, and resistance necessitate further research and development for optimized efficiency and minimal negative effects in targeting the PI3K pathway. To further understand the role of FBXO21 in cancer, we utilized shRNAs targeting FBXO21 in various cancer cell lines to identify the role of FBXO21 in cellular proliferation, apoptosis, and alteration of the PI3K pathway. The PI3K signaling pathway is initiated through p85α binding to the catalytic subunit, p110, leading to downstream AKT and mTOR activation. We found knockdown of FBXO21 stabilizes p85α, leading to dimerization of free p85 and decreased PI3K pathway activation. Therefore, we hypothesize that FBXO21 may function as a novel regulator of PI3K signaling, offering an alternative approach to PI3K inhibitors. Our findings suggest that FBXO21 may represent a novel therapeutic target acrossvarious cancer subtypes to target the overactive PI3K pathway. Targeting FBXO21 may enhance the efficacy of current therapies and provide potential benefits for improving patient outcomes in the treatment of cancer, including but not limited to AML
Modeling Glioblastoma's Effect on Neural Networks using Brain Organoids
Authors: Jude Werth. Mentors: Alex Shcheglovitov. Insitution: University of Utah. Glioblastoma (GBM) is the deadliest brain tumor that affects more than 10,000 people a year. Unfortunately, our understanding of the mechanisms disrupted by GBM is extremely limited. We are unable to safely manipulate brain cells in live patients, and the complexity of human brain networks are difficult to recapitulate in animals. This study employs brain organoids, derived from induced Pluripotent Stem Cells (iPSCs), to model the impact of GBM on neural activity. Organoid batches, grown under normal conditions and co-cultured with GBM cells, were monitored using microelectrode arrays (MEA) to record power in frequency bands. Over time, drugs influencing neural activity were introduced. Significant behavioral distinctions were observed between control and GBM-cultured organoids. Under Bicuculline and Tetrodotoxin, power in GBM organoids exhibited dramatic changes compared to the minimal difference in control organoids. Conversely, 4-Aminopyridine induced increased high-frequency activity exclusively in control organoids. Correlating power in frequency bands with spike activity, this study provides insight on how brain tumors influence neural networks, furthering disease comprehension to eventually develop effective treatment for patients.
Transcriptomics Meta-Analysis Identifies Upregulation of Clotting and Fibrinolysis Cascades in Colorectal Cancer Tumors Containing Hereditary PMS2 Mismatch Repair Deficiency
Authors: Trenton M. Gibson, Brett E Pickett. Mentors: Brett E Pickett. Insitution: Brigham Young University. Lynch Syndrome, formerly known as Hereditary Non-Polyposis Colorectal Cancer, is an autosomal dominant condition characterized by non-functional DNA mismatch repair genes, leading to mismatch repair deficiency (dMMR). Individuals with dMMR have an increased risk of developing cancerous tumors with microsatellite instability (MSI). The aim of this study was to investigate significant perturbations in gene expression among different dMMR variants within Lynch Syndrome, specifically focusing on variants in the PMS2, MLH1, and MSH2 loci. We obtained 55 public RNA-seq human colorectal tumor samples with specific germline dMMR mutations and 20 samples of healthy colorectal epithelium from the GENE Expression Omnibus (GEO). These samples were subjected to a robust RNA-seq data preprocessing and analytical workflow, which involved quality control, trimming, read pseudomapping and quantification using Salmon, identification of significant differentially expressed genes using edgeR, and gene ontology enrichment analysis using Camera. Signaling pathway impact analysis (SPIA) was employed to assess gene pathway perturbations. Our results revealed that tumor samples from individuals with germline mutations in the PMS2 MMR gene exhibited transcriptomic profiles indicating upregulation in pathways related to intrinsic and extrinsic prothrombin activation, fibrinolysis, and uPA/uPAR-mediated signaling, in comparison to other tumor and healthy samples. Previous research has established a correlation between these pathways and tumor growth, invasiveness, and metastasis. These findings provide a foundation for further research to explore the interactions between PMS2 and these pathways in influencing tumor development.
An Efficient Microwave Assisted Ullmann-Type Amination of 3- Bromopyrazolo[1,5-a]pyrimidine: Key Intermediate for Preparing 3,6-Di-Amino-Substituted Anticancer Heterocycles
Authors: Bryce Tolman, Jasper Terungwa Iorkula , Justin Singleton, Matt Peterson. Mentors: Matt Peterson. Insitution: Brigham Young University. An efficient method for preparing C-3 aminated pyrazolo[1,5-a]pyrimidines was developed. The method consisted of treating 3-bromopyrazolo[1,5-a]pyrimidine with a wide range of 1° or 2° alkylamines with CuI (20 mol%), L-proline (40 mol%), and Et 3 N (2 equiv) in DMSO under microwave heating conditions (130 °C, 4 hours). C-3 aminated products were obtained in good to excellent isolated yields (54–90%; ave. yield = 77%), and represents the most broadly applicable, non-palladium-catalyzed amination of 3-bromopyrazolo[1,5-a]pyrimidine ever reported. The coupling worked well for unfunctionalized 1° alkylamines such as butylamine, benzylamine, isopropylamine or cyclohexylamine, and more densely functionalized 1° amines with CH 2 - or CH 2 CH 2 -linked heterocycles were also well tolerated (e.g. pyridine-, indole-, thiophene-, and furan-linked methyl- or ethylamine derivatives). 2° Alkylamines such as morpholine, pyrrolidine, and piperidine also reacted well under these conditions. Heating under conventional oil-bath conditions required a more extended reaction time (40 h), but also gave products in good yield (72-76%) for both 100-mg and gram-scale reactions. A pegylated azide (11-azido-3,6,9-trioxaundecan-1-amine) was also coupled in good yield (65% yield microwave), demonstrating compatibility of this methodology for potential click-type applications. Our method is simple and efficient, and avoids drawbacks associated with alternative methods, including long reaction times, limited substrate scope, and required use of air-sensitive/extremely expensive palladium catalysts and specialized synthetic ligands.
Using Gut Microbiota Derived Metabolites As a Proxy for Gut Permeability and Subsequent Risk of Cachexia
Authors: Ellie P. Evans, Mmadili Ilozumba, Sheetal Hardikar, Neli Ulrich, Jennifer Ose. Mentors: Mmadili Ilozumba. Insitution: Utah Valley University. Cachexia is a complex syndrome characterized by severe weight loss and muscle wasting. It is also a prevalent complication in various chronic diseases, including cancer and acquired immunodeficiency syndrome. Recent research has underscored the pivotal role of the gut microbiome in systemic well-being. Furthermore, it has been shown that cancer patients suffering from cachexia have unique bacteria composition in the gut compared to that of non-cachectic patients. In the absence of stool samples, there are a few metabolites in the circulatory system that can be directly linked to gut microbiota. Examples include bile acids, and short chain fatty acids as metabolites produced by specific Phylum. The presence of these gut microbiota derived metabolites (GMDM) in the circulation indicate a compromise in the integrity of tight junctions in the intestines. These results prompted an investigation of GMDM as an indicator of gut permeability. Our hypothesis is that an increased concentration of GMDM in the circulation is linked to gut permeability, leading to the development of cachexia in patients with colorectal cancer. This literature review provides a comprehensive analysis of the relationship between gut permeability and cachexia, seeking to identify which GMDMs are the most accurate indicators of specific bacteria linked to gut permeability, and subsequently, are accurate projectors of cachexia. Acetic acid, a short chain fatty acid (SCFA) is a GMDM detected in the plasma of patients with gut permeability. Acetic acid makes up about 60% of the SCFAs produced by a healthy gut flora and 90% of it is produced by the genus Bifidobacterium. Our literature review will cover how closely a measurement of acetic acid and other GMDMs measured in plasma can be linked to gut permeability and to Bifidobacterium levels in the gut. Similarly, Indole is a GMDM produced by Escherichia coli and other indole-producing bacteria. Indole isn’t produced naturally anywhere else in the body. When it is naturally absorbed into the liver through the portal vein, it’s mostly converted into indoxyl sulfate. The heightened presence indole in plasma in sulfate-free forms could indicate that indole is being absorbed through holes in the tight junctions of the intestines, rather than through the portal vein. This information would allow cohorts that have collected plasma samples in the past to measure gut permeability by proxy, even if they’re unable to investigate the gut microbiota and metabolites present from stool samples. These connections found could further help us to use-already collected samples to find accurate biomarkers for early cachexia development in cancer patients. If an oral presentation is unavailable, a poster presentation would be great.
Inhibiting CDK9 and Autophagy in Pancreatic Cancer
Authors: Isabella Scalise. Mentors: Conan Kinsey. Insitution: University of Utah.
Elucidating the Role of TOX on Melanoma Cell Migration and Invasion
Authors: Allison Stevens, Gennie Parkman. Mentors: Gennie Parkman. Insitution: Weber State University. The principal genes that are responsible for the conversion of benign nevi, or pigmented lesions, to cancerous melanomas have been discovered and validated. However, we are still identifying the additional genetic alterations that are responsible for the migration and invasion of melanoma cells and ultimately metastasis of these melanomas as that is where treatment needs remain. (Davies, et al., 2002)One gene that has been identified to potentially play a role in the metastasis of melanoma is thymocyte selection associated high mobility group box, or TOX. Based on one study, the levels of TOX gene expression were found to be elevated in melanoma brain metastases versus extracranial metastases (Bierman et al., 2022). These findings have led us to hypothesize that TOX plays a role in the migration and invasion of melanoma into the brain. Preliminary work has been completed to clone our gene of interest, TOX, into an expression vector and transduce mammalian melanoma cells to evaluate their effects on melanoma cell rate growth and migration. These experiments will identify the effect of TOX on the initiation and progression of melanoma cells through in vitro melanoma cell culture and experimentation before potentially progressing to well-validated mouse models of melanoma.
Synthesis and Optimization of Novel Macrocylic TRK Inibitors For Treating Drug-Resistant Cancers
Authors: Matthew Stecher, Terungwa Iorkula, Matt A. Peterson. Mentors: Matt A. Peterson. Insitution: Brigham Young University. Tropomyosin Receptor Kinase (TRK) inhibition has become an effective therapeutic approach for treatment of a variety of cancers including soft tissue sarcoma, pilocytic astrocytoma, non-small cell lung cancers, colorectal cancers, glioblastomas, pediatric gliomas, papillary thyroid cancers, and secretory breast carcinoma. Despite the successful use of first-generation TRK inhibitors Larotrectinib and Entrectinib which have shown significant therapeutic response in patients, acquired resistance to these drugs has emerged and is creating serious barriers to maintaining long-term therapeutic efficacy. A common mechanism for acquired resistance is associated with the emergence of mutations. Hence, mutation-induced drug resistance continues to be a major challenge for both first- and second-generation TRK inhibitors. Here, we present the design of novel macrocyclic 3,5-diaminated pyrazolo[1,5-a] pyrimidine ligands with high potential for combating drug-resistant disease.
Positive Emotion and Suicidal Tendencies: A study of daily emotional regulation use in autistic and socially anxious groups
Authors: . Mentors: Jared Nielsen. Insitution: Brigham Young University. Objective: This study examines the role of positive reframing as a strategy to mitigate suicidality and enhance positive emotions. Background: Emotional regulation difficulties have been identified in numerous psychiatric populations, potentially leading to stress, incarceration, and tragically, suicide. Amidst the rising rates of suicidality among at-risk populations, this study aims to investigate the pivotal behavioral factors influencing suicidal thoughts and actions in autistic and socially anxious populations. Methods: Our investigation employed a longitudinal ecological momentary assessment study to explore the impact of various emotional regulation skills on positive emotion, negative emotion, and suicidality. We recruited 95 participants, 72 of which met criteria for inclusion, to answer daily surveys administered through a smartphone app that tracked emotional regulation use, positive emotions, negative emotions, and suicidal tendencies over time. Results: Our results indicate that for the social anxiety group, enjoying the moment significantly affects positive emotions (E=2.14, p<.05), but this effect is not observed in the autism group. Furthermore, both groups demonstrated that accepting feelings (E=4.40, p<.001; E=2.63, p<.01) and acknowledging that feelings don’t last (E=1.69, p<.05; E=3.13, p<.001) significantly increased daily positive emotions. Conversely, hiding feelings significantly decreased daily positive emotions in the social anxiety group (E=-1.76, p<.05). Self-blame increased negative emotions in both groups by, on average, four points. Regarding the reduction of daily average suicide composite scores, accepting feelings emerged as a significant factor for both groups (E=-1.88, p<.01; E=-2.15, p<.001). On the other hand, using self-blame significantly increased average suicide composite scores for social anxiety, mirroring its effect on negative emotions (E=1.42, p<.01). Conclusion: Positively reframing one's emotions is associated with increased daily positive feelings and reduced daily suicidal tendencies. This research sheds light on the complex interplay between emotional regulation strategies and their impact on mental health and emotions in these at-risk populations.
Finite Element Simulation of Microfluidic Chips
Authors: Robert Macdonald. Mentors: Troy Munro. Insitution: Brigham Young University. Due to the recent developments in the precision of small scale 3-D printing, the use of complex multi-dimensional heating geometries is now very feasible in microfluidics. Small channels can be filled with liquid metal and can become a heat source by passing an electrical current through the liquid metal. There is a desire for the creation of isothermal areas within microfluidic chips for processes such as polymerase chain reaction and melt curve analysis of DNA to detect mutations. One difficulty of designing isothermal areas in microfluidics is the complexity of the geometries involved and the precision needed to be useful. These two problems were addressed by using a finite element software COMSOL to simulate the microfluidic chip to aid in design iteration. Quick evaluation of the performance of different heating geometries in COMSOL allows for faster evolution of our design. Using these principles, a novel microfluidic chip design was developed with a simulated isothermal volume of 5 microliters and a temperature variation of <0.1 degrees Celsius.
Stereotactic Body Radiation Therapy Success – What Role Does Connexin-43 Distribution Play?
Authors: Tanner Frahm, Eugene Kwan, Ravi Ranjan. Mentors: Ravi Ranjan. Insitution: University of Utah. Introduction:Stereotactic body radiation therapy (SBRT) is a non-invasive treatment for ventricular tachycardia (VT) that acts as a promising alternative to the current gold-standard treatment, catheter ablation. Preliminary clinical successes indicate the promise of SBRT while subsequent animal studies suggest that the mechanism of SBRT is novel and unknown. We propose SBRT may alter Connexin-43 (Cx43) gap-junction distribution in cardiac myocyte walls, affecting electrical conduction and reducing VT episodes. A large animal model was used to evaluate Cx43 changes post-SBRT, aiming to elucidate its mechanism of action. Understanding this could expand SBRT's use in arrhythmia management and explore myocyte reprogramming.Methods:A large animal model (n=3) underwent cardiac SBRT on portions of their heart. Each animal provided control, untreated tissue, and treated tissues. Post-treatment, the hearts were excised, perfused, and preserved. Transmural sections were processed for histological and confocal microscopy analyses to assess scarring and Cx43 distribution. An algorithm for semi-automatic myocyte segmentation and Cx43 distribution analysis was developed and used. Two-sample student t-tests were conducted to compare Cx43 distribution between treated and control regions. All image and statistical analysis were performed in MATLAB.Results/Discussion:Preliminary results for the three preliminary animals indicate that treated regions of the myocardium had statistically significant differences in Cx43 distribution (p-values < 0.05). Treated values (mean standard deviation) were 48% 25%, 62% 26%, and 64% 17% of the distribution of Cx43 on the longitudinal ends while the untreated were 42% 30%, 44% 25% and 26% 16%. The proportion of Cx43 distributed along the longitudinal axis (the short ends of the myocyte) increased in all three animals. The results build on the findings of previous animal studies which suggested that the scarring like ablation was not the mechanism, but that Cx43 or other cellular components could be changing in response to therapy. Conclusions:The findings support the hypothesis that Cx43 distribution changes in response to SBRT indicating that the radiation could be inducing remodeling at the cellular level. Evidence of non-invasive cardiac reprogramming provides basic science credence to the preliminary and ongoing clinical studies evaluating the treatment in patients. The findings further inform and motivate more animal studies and analysis of changes to other cellular components.
Detecting Antibiotic Resistance Genes in The Environment
Authors: Natalie Welsh, Lauren Brooks, Skyler Belka. Mentors: Natalie Welsh, Lauren Books. Insitution: Utah Valley University. When bacteria gain resistance to antimicrobial substances, they become a public health threat due to an inability to treat infections and control outbreaks. Staphylococcus aureus is a common element of the human microbiome that is widely associated with antibiotic resistance. While MRSA (or methicillin-resistant S. aureus) has long been prevalent, new types of antibiotic resistance, including VRSA (or vancomycin-resistant S. aureus), have become an increasing threat in recent years. This research aims to collect samples and use polymerase chain reaction (PCR) to screen for genes associated with resistance to common antibiotics, such as erythromycin, tetracycline, methicillin, and vancomycin. Molecular biology techniques are used to test various resistant genes. First, sample collection uses FloqSwabs dipped in phosphate-buffered saline and swabbed on various locations on the UVU campus (e.g., door handles/knobs, vending machines, elevators, stair rails, water fountains, cash registers and keypads, countertops). Then, DNA from collected swabs was extracted using the DNeasy PowerSoil Kit. PCR was used to amplify the 16S rRNA gene to act as a positive control and confirm the methodology captured bacteria. Once confirmed, we also examined the samples for various antibiotic-resistant genes (e.g., ErmA, ErmC, TetM, TetT, etc.). Lastly, amplified DNA is visualized using electrophoresis gels, observing under UV light to verify amplification. Understanding the genes found on campus and where they are most prevalent will help elucidate the risks to students on UVU’s campus, providing valuable public health knowledge.
Utah Valley Flora Asteraceae Treatment
Authors: Annika Wood. Mentors: Michael Rotter. Insitution: Utah Valley University. The Asteraceae is the most common plant family in Utah County, Utah. With over 79 genera and 238 species, it is also the most diverse family. Due to this substantial size and diversity, the genera of the Asteraceae have traditionally been placed into tribes. This confusing taxonomic situation has made the Asteraceae a noticeable but difficult group to identify. In particular the beginning botany students and non-technically trained citizens often can recognize the Asteraceae but have trouble distinguishing the many species. To help with this issue, we are creating a guide to the tribes and genera of the Asteraceae of Utah County. This key will provide a general view of which genera are connected and which are not. Knowing these patterns and differences could prove to be useful information for those who wish to know more about the fantastic plants that grow within Utah County. The course of action for creating these keys include research of the specimens in Utah Valley University's herbarium as well as other online herbariums. For the tribes we are specifically researching the distinct taxonomic classifications for each tribe individually as well as what connects them together. When those connections and distinctions are laid out in an understandable key, we will further create keys for each genera in the tribes. The end result we hope will be a useful and informative tool for identifying plants in the Asteraceae family.
Atmospheric Modeling of Brown Dwarfs With PICASO, SONORA, and JWST
Authors: Brayden Roberts, Joshua Lothringer, Denise Stephens. Mentors: Joshua Lothringer. Insitution: Utah Valley University. We present theoretical model fits to the spectra of two complex cloudy L-type brown dwarfs, VHS 1256b (L8) and J0624 (L5). Using the James Webb Space Telescope’s (JWST) Near Infrared Spectrograph (NIRSpec) and Mid-Infrared Instrument (MIRI), we get the complete spectra from 0.6-28 microns. We first fit the data using two forward model grids from the Sonora group to estimate the temperature and cloud properties of our object. Then, we apply a modified retrieval fitting code called PICASO, to make more complex fits to our observations. We conclude that forward models struggle to accurately fit our objects, while PICASO’s complex modeling can help us better understand what physics and chemistry could be lacking from our forward models.
Identification of an aphid-transmitted DNA virus in Brassica oleracea in Utah
Authors: Travis Christensen, Geoff Zahn, Alma Laney. Mentors: Alma Laney. Insitution: Utah Valley University. In July 2022, green cabbage plants (Brassica oleracea) were observed with severe viral symptoms in a local community garden in Utah County. These plants were observed to be covered with cabbage aphids (Brevicoryne brassicae). Symptoms observed on the cabbage plants included yellowing, necrotic lesions, and brittle necrosis of the leaves. These symptoms have been found to be transmissible by the cabbage aphid to broccoli, cabbage, and kale, although symptoms are delayed in kale. Work is being done to find other transmissible plants within the brassica family. Sequencing of RNA yielded no results, however, amplification of viral DNA via rolling circle amplification (RCA) has yielded positive results. A sample obtained through maintenance of the virus and cabbage aphid is currently being subjected to RNAseq using the NovaSeq Illumina platform. Through several virological methods we are able to conclude the presence of a putative geminivirus transmissible through cabbage aphid in our affected plants. To our knowledge, this is the first report of an aphid-transmissible DNA virus of brassicas in Utah. Further work is being done to further identify, classify, and build the genome of this specific virus using Illumina sequencing.
Novel compounds produced by endophytes extracted from Cercocarpus ledifolius
Authors: Ezra Wylie, Merrill Halling. Mentors: Merrill Halling. Insitution: Utah Valley University. Various parts of Cercocarpus ledifolius, or curled leaf mountain mahogany, was used for medicinal purposes by Native Americans for a wide variety of uses including tuberculosis, syphilitic sores, and venereal diseases. Symbiotic microorganisms, called endophytes, often produce these compounds for defense of the tree. Novel compounds have been found in plants which have demonstrated antibiotic, antifungal, or other biological activities. Endophytes were grown from various parts of the tree, including roots, stems, branches, and leaves. The bioactive compounds were isolated and identified using chromatographic and spectroscopic methods.
Your Tooths Appetite for Hydroxyapatite
Authors: Megan Wesenberg, Britain Jeppesen, Brianna McDaniel. Mentors: Jodie Lopez. Insitution: Utah Valley University. Abstract: Hydroxyapatite is a natural substance found in bones and the enamel of teeth. When hydroxyapatite is compromised, demineralization begins to occur which can eventually lead to cavities. There are many fluorides on the dental market, some having negative connotations associated with them. Hydroxyapatite products have been explored as an alternative for traditional fluorides to create similar effects without the potential for toxicity. Fluorosis is the main toxicity point addressed. Many patients are apprehensive of the use of fluorides due to possible overconsumption and uncontrolled levels within the local water supply. Because Hydroxyapatite is very biocompatible, access to it does not pose any toxic concerns. Using this alternate material allows these patients access to similar benefits in the oral cavity that fluoride would provide them while also being considerate of their personal beliefs and concerns. Caries are an extremely prevalent issue within the dental office, accounting for pain in patients and a majority of treatment done daily. Caries are very prevalent in the adult population. Hydroxyapatite is a useful substance in caries prevention, another similarity that it has in common with fluorides. Remineralization of these early carious lesions through the aid of hydroxyapatite leads to avoidance of more invasive treatment at a later date. A common use for fluoride is limiting sensitivity of teeth that can be felt from a variety of different stimulants within the oral cavity. Hydroxyapatite can also be used as a desensitizing agent. Hydroxyapatite enters dentin tubules and blocks them, limiting nerve stimulation within the dental pulp.
Establishing and Monitoring New Populations of an Endangered Plant (Phacelia argillacea) Over Several Years
Authors: Tyler R Shaver, Lainey S Smith, Michael T Stevens. Mentors: Michael T Stevens. Insitution: Utah Valley University. Clay phacelia (Phacelia argillacea) was placed on the endangered plant list in 1978; at that time there were less than a dozen specimens alive at a single location on private land. This year, that same location, a steep hillside in Spanish Fork Canyon, had over 300 individuals. For the past four years, at suitable sites on public land nearby, we have been planting clay phacelia seeds and monitoring seedlings to understand the factors that will lead to successful establishment of this plant on public land. Following the planting of 32,400 seeds in 2020 and 13,500 in 2021, germinants that emerged were monitored and counted in the spring, summer, and fall each year between 2021 and 2023. In 2021, ten seedlings emerged, and of those six survived to produce seed. In 2022, 110 seedlings emerged, and of those 3 survived to produce seed. In 2023, 30 seedlings emerged, and of those four have survived as of the last monitoring trip. It is interesting to note that although emergence across the three years varied by as much as 11-fold, the number of plants that survived to reproduce was uniform and consistently low. The majority of seedlings that survived to produce seeds emerged in the late summer and fall. It is likely that monsoonal rains that occur in the late summer and fall make clay phacelia seed production more probable.
Remote sensing mineral identification: an intercomparison of Hyperspectral and multispectral imagery using open-source applications in the Marysvale Volcanic Field.
Authors: Noah Christensen, Matt Olson. Mentors: Matt Olson. Insitution: Utah Valley University. Geologic maps serve as a valuable tool with diverse applications, one of which is resource exploration. Understanding available resources in America is beneficial for enhancing energy security, environmental sustainability, and economic growth. As political discourse rises, it is crucial to address national security concerns and head towards short- and long-term goals of energy independence. Traditional geologic mapping is characterized by time-intensive and high-cost fieldwork, but through multispectral and hyperspectral remotely sensed imagery it is possible to instantly map extensive areas using unique absorption patterns of minerals in the reflected spectral signature of the electromagnetic spectrum. This study explores an intercomparison of mineral mapping using Hyperion (EO-1), ASTER, and AVIRIS imagery in the Marysvale Volcanic Field, Utah. The satellites and high-altitude aircraft were chosen due to their varying number of spectral channels, spectral ranges, and spatial resolutions, allowing for a cross-analysis of their strengths, weaknesses, and overall capabilities. While previous studies have utilized AVIRIS and ASTER imagery within the Marysvale Volcanic Field, no prior research has explored a comparison of mineralogical maps using these sensors at a specific location. All analysis will be conducted through open-source applications to promote accessibility in future research and reproducibility of image generation through the sharing of R code. This research will enhance our comprehension of the necessary spectral and spatial resolutions for generating accurate mineral identification. Published geologic maps and in-situ field samples were used to validate the generated maps. We expect to find one of two outcomes: a strong contrast in classified mineralogy depending on the image source used, pointing towards a need for higher spatial and spectral resolutions to achieve accurate mapping, or minimal variation in classification, indicative of an unnecessary number of spectral bands. Developing accurate and accessible mineral mapping tools may be the next step in strengthening our knowledge of resource availability, without the need for rigorous traditional mapping methods.
Spatial Dynamics of Foliar Fungal Community Structure in the Pando Aspen Clone
Authors: Austen Miller, Josh Leon, Geoffrey Zahn. Mentors: Geoffrey Zahn. Insitution: Utah Valley University. The Pando aspen grove in Central Utah is a remarkable organism comprising a clonal colony of Quaking Aspen (Populus tremuloides) in Fishlake National Forest. While Pando has garnered plenty of attention, the role of the fungal microbiome within this clonal system remains relatively uncharted. This research project delves into the endophytic and epiphytic fungal communities inhabiting the leaves of this giant single organism. The clonal nature of Pando means that plant genotype is consistent across a broad area, allowing us to test hypotheses about how plant-associated fungi disperse and associate with their hosts. In particular, we are testing whether proximity to a forest edge affects foliar fungal community structure. This research will enhance our understanding of how forest patch size and location contribute to plant-fungus community formation. These findings may also have implications with the potential to affect the health and resilience of this aspen clonal colony, which could in turn inform conservation strategies and forest management in the face of environmental challenges and the shifting ranges of aspens and fungal symbionts.
Host range testing and pathogenicity confirmation of potentially new blueberry fungus
Authors: Kayla Knaperek, Megan Frisby, Geoffery Zahn, Alma Laney. Mentors: Alma Laney. Insitution: Utah Valley University. In February 2021, mycelial growth was found on blueberries, leading to the obtention of a fungal isolate using potato dextrose agar (PDA) after surface sterilization of the blueberries. The rapid growth of white mycelium and sclerotia was observed on the medium. Inoculation of basil plants with spores from surface-sterilized sclerotia in potato-dextrose broth resulted in necrosis and spreading in terminal buds, ultimately leading to plant death. Further isolation of the identical fungus from the diseased basil tissue confirmed its pathogenicity. Analysis of the isolate's ITS region sequencing revealed a 90% nucleotide identity to the closest relative, Botrytis cinerea. A project was initiated to further characterize the fungus, pathogenicity, life cycle, and morphological traits. The growth and development of the fungus were observed on V8, cornmeal, blueberry, and potato dextrose agars to characterize its nutritional requirements and growth patterns. Host range testing involved the systematic inoculation of various plant species (which were used as growth media), followed by careful symptom monitoring and photographed documentation. Additionally, Koch’s Postulates will be conducted to establish the causal relationship between fungal infection and the observed disease symptoms in the host plants. Seven days after inoculation, necrosis, wilting, and leaf discoloration were observed on select leaves of Lavender var. Oregano, suggesting possible infection by the blueberry fungus. Considering potential host plant immaturity during the initial inoculation, a re-inoculation is planned to ensure successful infection and to obtain conclusive results. Further investigation is warranted to confirm the pathogenic impact of the fungus on host plants.
Using Carbon and Nitrogen Stable Isotopes to Determine the Diet Composition of Ground Beetles (Coleoptera: Carabidae) in Provo Canyon, Utah
Authors: Hayley Karns, Dylan Bryant, Noah Christensen, David Kirby, Sarah Marchant, Sarah Nicholas, Emmaline Saunders, Hannan Thomas, Nathan Smith, Dan Cavan, Daniele Ghiretti. Mentors: Alessandro Zanazzi. Insitution: Utah Valley University. Arthropods play a crucial role within terrestrial ecosystems by virtue of their substantial consumption of plant matter, their status as primary prey for various organisms, their function as key recyclers of organic material and nutrients in ecosystems, and their pivotal role as primary pollinators. Ground beetles (Coleoptera: Carabidae, or “Carabids”) represent a prominent and highly diverse taxonomic assemblage among arthropods inhabiting temperate forest floors. Despite their significance in these ecosystems, little is known about their trophic structure and level. These knowledge gaps primarily arise from the limitations associated with traditional investigative methods. For instance, the observation of feeding behavior in carabids proves challenging due to their diminutive size and predominantly nocturnal foraging habits. These uncertainties hinder the attainment of an understanding of community structure and trophic interactions both within the arthropod realm and with the vertebrates in their ecosystem. As a result, this research aims to gain a greater knowledge of the trophic structure of carabids using 15N/14N and 13C/12C isotopic analysis. Ground beetles were collected using pitfall traps placed near Big Springs Park (Provo Canyon, northern Utah) in September 2023. The traps were made with two plastic cups: a smaller cup was suspended inside a bigger cup. The smaller cup was partly filled with vinegar to attract the insects whereas the bigger cup was partly filled with monoethylene glycol, a compound that has been shown to preserve the insects without affecting their isotopic composition. Insect samples were collected over a period of four weeks. The beetles were then cleaned with a 2:1 mixture chloroform and methanol, dried, ground in an agate mortar and pestle, and placed in tin capsules for the isotopic analyses. Once the results are obtained, mixing model analysis will allow us to estimate the proportions of different food items based on the stable isotope ratios of consumers and food items and on known fractionations. This knowledge will contribute to a greater understanding of trophic structures and carbon pipelines in local ecosystems of northern Utah, and to a better prediction of ground beetle response to ongoing global warming and the associated changes in forest environments.
Production of Antibiotics in Soil Bacteria against ESKAPE Pathogens
Authors: Cori Bailie, Arlene Majers, Katherine Judge. Mentors: Olga Kopp. Insitution: Utah Valley University. Ever since antibiotics have been in use, bacteria have been evolving to develop resistance against them. Each year, the number of people who die from previously treatable infections increases, showcasing the seriousness of this global issue. According to the CDC, facilities were overwhelmed during the 2020 pandemic, decreasing antibiotic production. By refocusing on discovering and producing new antibiotics, resistance can once again begin to be combatted. Bacteria found in soil samples were used to test for antibiotic production, using safe relatives to the ESKAPE pathogens. Starting with three master plates on Tryptic Soy Agar, 39 total bacterial colonies were studied. Colonies of interest were then PCR tested for DNA sequencing, and will be run through multiple different chemical tests for classification. Results showed that three different colonies displayed antibiotic activity. Colony 7 on master plate A produced antibiotics against Bacillus subtilis. Colonies 6 and 13 on master plate B, both produced antibiotics against Mycobacterium smegmatis, and Staphylococcus aureus. The results suggest that there are more soil bacteria to be discovered that may be able to produce antibiotics for common infections that are getting harder to treat. Further testing needs to be done to determine whether these colonies are safe for human therapy.
Do the differences in size between heteromorphic sex chromosomes influence organism longevity?
Authors: Olivia Frary, Carl Hjelmen. Mentors: Carl Hjelmen. Insitution: Utah Valley University. Previous work has shown that there are significant differences in lifespan between sexes of the same species. Whether it is an XY or ZW system, the heterogametic sex dies earlier. There are thought to be many factors that contribute to the difference in lifespan between the sexes. This research aims to investigate this relationship further by digging deeper into the degree of differences between the heteromorphic sex chromosomes. We want to determine whether the degree of differentiation correlates with the lifespan differences in species. The comparison of total genome size between the sexes of multiple species are used to find the difference in the size of their sex chromosomes, which is then compared to longevity data on the species to determine a relationship. This genome size data comes from publicly available databases and literature. These comparisons are made using comparative phylogenetic methods in order to account for evolutionary relatedness utilizing a newly constructed phylogenetic tree. All analyses are completed in R and include PGLS (Phylogenetic Generalized Least Squares) and measures of phylogenetic signal (Pagel’s lambda, Blomberg’s K). We will discuss the results of the comparative phylogenetic analyses and any patterns seen regarding longevity.
Creating a universal framework for reconstructing phylogenies: Building trees at your fingertips using R
Authors: Barbara Jetton, Carl E Hjelmen. Mentors: Carl E Hjelmen. Insitution: Utah Valley University. This project’s emphasis is the creation of an accessible and reusable tool to be used in broader scientific inquires of evolutionary relatedness. As of January 2023, GenBank contains 2.9 billion nucleotide sequences representing 504,000 distinct species. Despite this abundance of data, comprehensive and up to date phylogenies are lacking, impeding investigation into genetic histories and trait evolution. To address this problem, I am developing an open-source pipeline to expedite the construction of these evolutionary trees. I have a specific aim of creating a phylogeny for the order Diptera (flies) in order to investigate the evolution of the chromosome numbers for over 2500 species with chromosome count data on karyotype.org. I use R code, and the packages “reutils”, “ape”, and “seqinr”, to create reusable universal scripts which pull accession numbers from NCBI GenBank for each species based on the requested gene names. A second script was built to use the curated accession numbers to pull FASTA sequence data for each gene and write a multi-FASTA file for each gene, resulting in a comprehensive dataset necessary for alignment and phylogenetic tree construction. This effort will result in updated insights on the evolutionary history of Diptera related to chromosome numbers and can be used in further research in comparative biology. Additionally, these scripts can be used to investigate and reconstruct phylogenetic information for any species group with sequence data available on GenBank.
Lithuania's Quest for Energy Independence from Russia
Authors: Michelle Stanley. Mentors: Baktybek Abdrisaev. Insitution: Utah Valley University. Due to the Russian invasion of Ukraine in 2022, much of Europe has been striving to reduce their dependence on Russian energy. Lithuania, however, began this process 11 years ago when Russia raised the price of Russian gas transported through Gazprom. Lithuanian leadership recognized the potential danger of being dependent on Russia and with the Russian invasion of Ukraine, those concerns proved to be well-founded. Through its history, Lithuania has experienced Russian oppression and has fought for its sovereignty. The history of Lithuania’s energy relationship with Russia from its declared independence from the Soviet Union in March 1990, its complete dependence on Russia for gas, and the process of becoming the first European Union country to become independent from Russian gas in May 2022. This is a case study which shows that: independence from Russian energy removes Russia’s coercive power over that country, the current European energy crisis is the culmination of long-standing European dependence on Russian energy, and that eventually European countries will have to reconcile with Russia. The article will outline three significant periods of time in Lithuania’s energy relationship with Russia: the Lithuania-Soviet Union energy relationship immediately before the fall of the Soviet Union, the process whereby Lithuania has pursued its energy independence from Russia since 1991, and Lithuania’s efforts to achieve full energy independence from Russia following the Russian invasion of Ukraine.
Exploring Ontogenescence: The Impact of Food Availability and Variety on Early-Life Mortality and Development in Brine Shrimp
Authors: Cassandra Nelson, Braden Richards, Grace Van Buren, Fernando Gonzalez, Ian Kirkpatrick, Paul Dunn. Mentors: Paul Dunn. Insitution: Utah Valley University. Many organisms experience a life history pattern called ontogenescence, a high but declining mortality risk during early life. Ontogenescence can have a large effect on a population’s growth by limiting the number of new recruits to the population. Clearly, and yet paradoxically, death before reproductive maturity should be selected against, yet ontogenescence persists across many otherwise dissimilar organisms. Some intriguing hypotheses to explain this pattern have been proposed but have not been thoroughly tested. One of these hypotheses, acquisition of robustness as a function of age, is perhaps the most intuitive. The goal of our current research is to examine the validity of this hypothesis by using brine shrimp (Artemia franciscana) as a model organism.Tracking life-history traits like ontogenescence often requires the researcher to be able to follow an individual throughout its lifespan. In aquatic invertebrates, this means culturing animals individually, which can be quite difficult. Here we report on progress we are making with these culturing methods by testing how food availability and variety affect the early life mortality and development rate of brine shrimp in small-volume culture. Our null hypotheses are that neither of these variables will affect mortality or age to maturity in the animals. Our alternative hypotheses are that increased food availability and variety should lower mortality risk and age to maturity. To test our hypotheses, we hatched brine shrimp cysts in artificial seawater and placed individual artemia into wells of 6-well cell-culture plates filled with artificial seawater. We fed the shrimp one of several food treatments to see how diet affects development and mortality. In our first round of trials, we provided our animals with two different food concentrations (high food vs. low food) of the three food types we evaluated: a unicellular alga (Nannochloropsis), a cyanobacterium (Spirulina), and brewer’s yeast (Saccharomyces cerevisiae). In our second set of trials, we provided the shrimp with less variety in their diet (only two of the three food types). As the artemia developed, we conducted regular water changes and monitored development and mortality. We tracked the fate of the artemia until all individuals had either died during development or reached adulthood. Our food availability trials resulted in no significant difference in either mortality risk during development or age at maturity based on food concentrations. Trials examining the effects of limiting the variety of food types are ongoing.
The Relationship Among Attachment Styles, Couple Satisfaction, and Perceived Stress
Authors: Noah James, Rebekah Hakala, Todd Spencer. Mentors: Todd Spencer. Insitution: Utah Valley University. The Relationship Among Attachment Styles, Couple Satisfaction, and Perceived StressNoah James, Rebekah Hakala, Todd SpencerIntroductionAttachment styles play a pivotal role in romantic relationships. According to existing research, individuals with fearful, dismissive, or preoccupied attachment styles tend to experience elevated stress levels (Candel & Turliuc, 2021; Waring et al., 2019). Conversely, those with secure or preoccupied attachment styles report greater relationship satisfaction (Candel & Turliuc, 2021). By exploring the relationship between attachment styles, stress, and relationship satisfaction we hope to foster healthier relationships and deepen our understanding of the interaction between attachment orientations and emotional well-being (Candel & Turliuc, 2021; Waring et al., 2019).AnalysisThe purpose of the present study is to examine the relationship among attachment styles and couple satisfaction and stress. Our sample consists of 411 married individuals. Participants completed the Perceived Stress Scale - short form (PSS-4; Cohen, Kamarck, & Mermelstein, 1983), The Relationship Questionnaire (RQ; Bartholomew & Horowitz, 1991), and Couple Satisfaction Index (CSI-4; Funk & Rogge, 2000). Results of the one way Anova were significant F (3,407) = 10.48, p=<.001. There was a significant difference in levels of relationship satisfaction among attachment styles. Secure attachment (M=15.66, SD = 2.44), fearful attachment (M=14.09, SD = 3.30), preoccupied (M=15.75, SD = 2.35), and dismissing (M=14.05, SD = 3.54). Results of the Bonferroni Post-hoc analysis indicated a significantly higher levels of couple satisfaction than fearful and dismissing attachment styles (p.<.001). There was no significant difference in level of relationship satisfaction between Secure and preoccupied attachment styles. Additionally, there was a significant difference in levels of perceived stress among attachment styles. Secure attachment (M=11.79, SD = 2.47), fearful attachment (M=13.91, SD = 2.55), preoccupied (M=13.20, SD = 3.35), and dismissing (M=11.81, SD = 3.54). Results of the Bonferroni Post-hoc analysis indicated a significantly lower levels of stress among securely attached compared to fearful and pre-occupied attachment styles (p.<.001). There was no significant difference in level of stress between Secure and dismissing attachment styles. Results provide empirical support that secure attachment styles tend to be beficial for both relationship satisfaction and perceptions of stress. Further, dismissive attachment styles reported similar levels of stress as securely attached participants but had the lowest level of relationship satisfaction.
Cognitive and Emotional Intersection: Investigating the Relationship Between Academic Performance and Depression Among Students
Authors: Alley Fausett, Megan Ritter Martin, Kristin Davenport, Malisa Brooks, Kent Hinkson. Mentors: Kent Hinkson, Malisa Brooks. Insitution: Utah Valley University. Background: University students oftentimes face challenges with well-being and mental health, including depression, anxiety, sleep problems, PTSD, and suicide ideation/behaviors. However, previous research in some areas such as depression and its impact on student’s academic performance has remained generally inconclusive because of the contradictory findings that have often been reported. For example, one study will find a moderate association between grade point average (GPA) and depression, while another will in turn fail to find a significant relationship. Thus, more research is needed beyond simple correlations between GPA and depression to understand possible mechanisms and pathways. The current research hypothesizes that depression symptoms will either not be related or be weakly related to GPA but will be significantly associated with several possible mediating variables such as “turning in assignments late”, “having withdrawn from a class”, and “being placed on academic probation.”Methods: University students (n = 1,359) were recruited to participate in this study from dozens of universities across the United States in 2021. Data was collected anonymously and confidentially through a targeted online survey. Students were compensated with a $10 Amazon gift card for their participation. Zero order correlations were conducted to examine the relationship between variables of interest, which may lead to possible mediating pathways.Results: No statistically significant correlation was observed between depression symptoms and academic performance among students. Yet, several other measures of academic performance beyond GPA were found to have negative relationships with depression including five questions of particular academic activity and items such as withdrawing from class, being placed on academic probation, etc. Further, the strength and significance of the relationship between depression symptoms and these measures of academic performance were stronger and more pronounced in those in their Freshman and Sophomore years. Additionally, the relationships were weaker during their Junior and Senior years, and practically non-existent in graduate programs.Conclusion: In summary, our study contributes to the growing number of often-contradictory studies demonstrating a sometimes-yes, sometimes-no relationship between depression and GPA. However, our study goes beyond this binary comparison to explore other variables of academic performance and found several significant relationships that can help the field better understand the impacts of depression on student’s performance. These findings emphasize the importance of addressing mental health for better academic outcomes for university students. Implementing targeted support systems and interventions within educational institutions could benefit students’ overall well-being and improve academic performance.
The "fly"-logeny of Drosophila Chromosome Evolution
Authors: Audrey French, Carl E Hjelmen. Mentors: Carl E Hjelmen. Insitution: Utah Valley University. Chromosome numbers are often one of the first pieces of genetic information we collect about the genome of an organism. These chromosome numbers vary widely across the tree of life and will change due to fission and fusion events, where the number increases or decreases, respectively (Blackmon and Demuth 2015, Perkins et al. 2019, Sylvester et al. 2020, Morelli et al. 2022). As the Drosophila species group has been a model for more than 100 years, there is a plethora of information on their karyotypes, including number, chromosome shapes, and sex chromosome systems. The shapes of chromosomes vary and can be described as metacentric (v), submetacentric (j), telocentric (rod), and small and heterochromatic (dot). In the Drosophila genus, sex chromosome systems can be neo-sex, XY, and X0. The numerous species of Drosophila can be compiled into the major subgenera of Drosophila and Sophophora, which have diverged for around 40-65 million years. The karyotype data of the Drosophila genus has been compiled into an open-source database. I am using this database to find the rates of chromosome number change in the Drosophila genus. This analysis is done through the chromePlus package in R (Blackmon et al., 2019) which will perform a comparative phylogenetic analysis, and a phylogeny of 152 species in the Drosophila genus (Hjelmen et al., 2019). Using these available tools, I can compare rates of fusion and fission between sex chromosome systems and subgenera. This could expand the knowledge on evolution of chromosomes and genomes.
Using Graph Coloring to Optimize Monitoring Electric Power Networks
Authors: Nathan Klundt, Violeta Vasilevska. Mentors: Violeta Vasilevska. Insitution: Utah Valley University. In electrical power networks, phase measurement units (PMUs) are sensors used to monitor the network. However, these PMUs are very costly, hence the electric company are interested in using the minimum number of PMUs that will ensure that they can observe the whole network. This real-life problem is modeled in graph theory as a graph coloring game. Namely, the power domination problem [2, 3] in graph theory is concerned with finding a minimum number of these sensors needed to color (observe) the entire graph (network) according to a set of rules. We consider two variants of this coloring problem. The k-fault-tolerant power domination [3] is asking to find minimum number of PMUs needed to observe (color) the whole network (graph) even when k number of the PMUs are faulty but allows only one PMU to be placed on an electric node (vertex). The other variant, called robust power domination [1], asks the same as fault tolerant power domination, but allows for multiple PMUs to be placed on the same electric node (vertex). In this presentation, we introduce these coloring problems through examples, and provide some theoretical bounds on the minimum number of PMUs needed for various families of graphs for both k-fault-tolerant and robust power domination problems. References: [1] Beth Bjorkman and Esther Conrad. (2023). Introduction to Robust Power Domination. arXiv:2305.13430. [2] Dennise J. Brueni and Lenwood S. Heath. The PMU placement problem. SIAM Journal on Discrete Mathematics, 19(3): 744-761, 2005. [2] Teresa W. Haynes, Sandra M. Hedetniemi, Stephen T. Hedetniemi, and Michael A. Henning. Domination in graphs applied to electric power networks. SIAM Journal on Discrete Mathematics, 15(4): 519-529, 2002. [3] Kung-Jui Pai, Jou-Ming Chang, and Yue-Li Wang. Restricted power domination and fault-tolerant power domination on grids, Discrete Applied Mathematics, 158(10):1079–1089, 2010.
The More the Merrier: Building the Surface Brightness Fluctuation Distance Ladder
Authors: Mikaela Cowles, Joseph Jensen. Mentors: Joseph Jensen. Insitution: Utah Valley University. We are developing a newly calibrated distance ladder based on surface brightness fluctuations (SBF) to decrease systematic uncertainties in the current measurement of the Hubble Constant. James Webb Space Telescope (JWST) observations of 14 nearby elliptical galaxies are now being observed to measure a new zero point for SBF distances independent of Cepheids. We have recently acquired 69 images of massive early-type galaxies using the Hubble Space Telescope (HST). These HST distances have doubled the number of galaxy distances measured using SBF and will be combined with past SBF surveys to calculate the Hubble Constant to help resolve the Hubble tension. These distances will be added to the Cosmicflows-4 database to help map the mass distribution in the local universe. This project will continue with the allocation of an additional 123 HST orbits, from which we expect to add ~40 galaxies in 2024.
Interoperability and Artificial Intelligence
Authors: Asher Mitchell, Neil Chilson. Mentors: Neil Chilson. Insitution: Utah State University. With the rapid adoption of Artificial Intelligence marked by the release of OpenAI’s GPT model and a number of similar models, concerns are being raised about the potential for centralization of control over the technology, which could have implications like control of user data, increased political influence, lack of user choice, and several other potential issues.This paper focuses on an alternative to the currently proposed solutions to this threat; creating a separate regulatory agency for the technology, or legislating conformity to specific standards. We focus instead on different interoperability-based solutions that allow end users to tap into the source code, giving them the ability to ensure control of their data and allowing for competition in the AI market.
IBD Support: Mental Health Matters
Authors: Kacey Rowe, Rachel Arocho, Allison Ensign. Mentors: Rachel Arocho, Allison Ensign. Insitution: Utah Valley University. Mental health amongst IBD patients is often overlooked and forgotten when they are dealing with their personal physical symptoms. There is little research on the benefits of social support for IBD patients. In online forums, it appears some IBD patients report feeling depressed and having negative thoughts about living life on a day-to-day basis. Indeed, prior research has found associations between IBD and mental health; for example, one study found that 17.3% of IBD patients had lifetime suicidal ideation, which is much higher than the general population at a 4.0% rate (Xiong et al., 2022). Another study did physical and mental exams and found on average, people with higher depression symptoms were six times more likely to have their disease be more active (Marrie et al., 2021, para. 16). Due to the high rate of depression, it would be beneficial to design a website to track symptoms and create online forums giving people the opportunity to connect with peers who have IBD. IBD can drastically affect a person’s life, even in a mild case. According to the CDC, IBD is estimated to affect 3 million US adults, a little over 1% of all Americans (Xu et al, 2018). Few people in the 1% category who struggle with IBD have connected online with others who are experiencing the same autoimmune disease. Although prior research has identified the association between physical IBD symptoms and mental health, little has been proposed to help these patients. Our goal is to create a form of social support for people who have been diagnosed with IBD. For 30 days, we will take 20 participants and have them record their symptoms and thoughts through quantitative and qualitative data. To do this, the participants will be asked to use a website which we have created from scratch. They will be using the Patient Health Questionnaire-9 (PHQ-9) and the Short Inflammatory Bowel Disease Questionnaire (SIBDQ). The PHQ-9 will be used to check in on mental health, while the SIBDQ will focus on the physical symptoms of IBD. Each week, they will participate in forums on the website, which will allow them to connect online and anonymously with others who share their experiences. At the start of the month, daily throughout the study, and at the end of the month, participants will report on their health symptoms through a combination of the measures named above and short tracker questions. (Note: Project is still under IRB approval, we aim to start participants by the end of the year.)
Transcriptome analysis to study the effects of drought in tomato
Authors: Aubrilin Johnson. Mentors: Yu Ya Liang. Insitution: Utah Valley University. Drought stress negatively affects the growth, survival, and production of crops. Developing drought-tolerant cultivars is an important strategy for maintaining crop yields under undesirable water conditions. Tomatoes are an important crop both grown worldwide and here in Utah. Improving drought tolerance in tomato plants can increase yearly yields and reduce the amount of crops lost during the periodic droughts that Utah has. A way to develop drought-tolerant tomatoes may be through identifying and utilizing genes that enhance survival and growth rates under stressful water conditions. In this study, we will use two varieties of tomato, including drought-tolerant wild species, and susceptible commercial varieties. According to previous studies, drought during late the vegetative stage will significantly reduce the yield, therefore this study will focus on that. Using RNA-seq to find the difference in gene expression between the control and drought groups. Identifying differences will facilitate in finding candidate genes that may have a potential role in drought resistance. Then take the top cultivar and find the specific drought-resistant gene, which can then be used by Utah tomato growers to yield more resistant crops.