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Evaluating the role of LRRC1 in melanoma growth and metastasis

March 21, 2024 12:00 AM
Authors: Kylee Fernandez. Mentors: Gennie L Parkman. Insitution: University of Utah. Evaluating the role of LRRC1 in melanoma growth and metastasisThe development of brain metastases is a critical problem in Utah, regardless of the novel therapies created for melanoma. The melanoma mortality rates in Utah are 31% higher than the national average and the melanoma incidences are 80% higher. To lower these incidences, our research is aimed at investigating targets in melanoma that play a crucial role in brain metastasis and can be identified as therapeutic interventions.LRRC1 is a gene known as Leucine Rich Repeat Containing 1. LRRC1 is involved in early-stage adipocytic differentiation. Altered gene and protein expression of LRRC1 is observed in melanoma potentially due to the vital role LRRC1 plays in adipose stem cells that differentiate by adopting the phenotypic, biochemical, and functional properties of more terminally differentiated cells. To evaluate the effect of LRRC1 on melanoma growth and metastasis, we are using an established autochthonous in vitro and in vivo model of melanoma based on the RCAS/TVA avian retroviral system. The results of this study will have tremendous potential to contribute to the understanding of the genetics of this heterogeneous disease.

Bx42 is Required for Brain Development and is Linked to Microcephaly

March 21, 2024 12:00 AM
Authors: Adriana Bibo, Nicole Losurdo, Nichole Link. Mentors: Nichole Link, Cindy Greaves. Insitution: University of Utah. Microcephaly is a neurodevelopmental disorder characterized by occipital frontal circumference (OFC) more than two standard deviations below the mean. It can be accompanied by comorbidities including intellectual disabilities, seizures, and other developmental phenotypes. Microcephaly is attributed to malnutrition and exposure to toxins or infection during pregnancy, but genetic mutations are also a leading cause. To investigate the genetic mechanisms behind microcephaly, our lab collaborates with a physician who has completed whole exome sequencing for two hundred microcephaly patients. He identified potentially pathogenic human variants, which we are studying using Drosophila melanogaster as our model organism. We screened for loss of function phenotypes through RNAi knockdown of fly orthologs to determine if these genes are necessary for brain development. In our primary screen, we found that RNAi knockdown of Bx42 in neural stem cells or post-mitotic neurons causes significantly reduced brain lobe volume. In our current study, we are assessing potential causes for reduced brain lobe volume. We seek to determine if RNAi knockdown of Bx42 in neural stem cells or neurons affects cell number, proliferation, or death in developing brains.

Using Technician Statistics For Productive Animal Care

March 21, 2024 12:00 AM
Authors: Grace Moore. Mentors: Aaron Olsen. Insitution: Utah State University. AbstractAnimal care technicians for research labs have many responsibilities in order to maintain the integrity of a research project. However, it is difficult to determine what tasks will require most of a technician’s time and effort. Thus, it is proposed that tracking what each individual does during a given shift can allow supervisors and technicians to create an efficient schedule of how they will work and provide a standard for individuals to meet every day. This project consists of tracking in detail what an animal care technician does in a given “shift”, including observation hours, handling and restraining, working in different biosafety levels, cleaning and prepping caging, and changing the caging. This data collection, over several months of work, finds relationships between tasks, the frequencies of being completed, and the time they take. The key tasks of an animal care technician are observing, providing nourishment, maintaining clean environments for both the researchers and the subjects, and maintaining supplies and accurate records. Additionally, many hours are dedicated solely to observing the animals to ensure their health and safety. Moreover, cleaning and prepping of caging or supplies are completed more than half of the time during a given shift. Finally, working with a given species may require more time to complete a task (such as cage changing or cage preparation) compared to another species despite the task being the same. If each technician were to track their tasks and create a profile of personal statistics, they would be able to easily determine how long a task should take. Moreover, a supervisor would be able to determine if a technician is working more efficiently or even falling behind during daily tasks. Overall, these findings could be used to incorporate better time management or planning for institutions to know what more time or resources may need to be devoted to in order to maintain a safe environment, provide exceptional care for the subjects, and follow every protocol.

In the Depths of the Understory: Costa Rican Associations Between Ants and Coccoidea Unraveled using NGS DNA Barcoding

March 21, 2024 12:00 AM
Authors: Sylvia Lee, Ainsley Parkins, Rodolfo S Probst. Mentors: Rodolfo S Probst. Insitution: University of Utah. Mutualisms between ants and plants are ubiquitous interactions and have been evolving for over 100 million years. Studies have been done on systems wherein the plants provide nutritional resources for ants, but the dynamics of mutualistic interactions in environments where host plants do not provide obvious nutritional rewards continue to remain elusive, raising questions about their co-evolutionary histories. In these circumstances, associated fauna, such as mealybugs and soft scales (Hemiptera: Coccoidea: Pseudococcidae and Coccidae), serve as intermediaries of the association, providing honeydew (enhanced plant sap) as a main food source to their host ants. However, the identity of the insects involved in these associations and their co-evolutionary history with ants is poorly understood. By focusing on samples collected in Costa Rica from 33 colonies of the Neotropical plant-ant genus Myrmelachista (Formicinae: Myrmelachistini), we sequenced DNA barcodes (cytochrome oxidase subunit 1 [CO1]) using Oxford Nanopore Technology and employed Next-Generation Sequencing (NGS) for both the Myrmelachista ants and their associated fauna. We aimed to identify their taxonomy, phylogenetic relationships and identify unique interactions between ants and their associated fauna. We recovered DNA barcodes for eleven Myrmelachista species and seven putative species of mealybugs (n=5) and soft scales (n=2). For the seven putative species of Coccoidea, our DNA barcodes, when compared to available sequences from the NCBI database, recovered an average of 85% match similarity. The closest matches associated our putative species to Old World Coccoidea taxa, reinforcing the need for taxonomic studies of this superfamily for the Neotropical region. Each putative species of soft scales was found uniquely associated with two Myrmelachista species (M. flavoguarea and M. cooperi). For all eleven Myrmelachista species, five were associated with two putative mealybug species. One putative mealybug species was associated with five different Myrmelachista species; one was uniquely associated with M. nigrocotea. Same associations were found between the associated fauna of M. flavocotea and M. lauropacifica; M. haberi and M. RSP027; M. plebecula, M. meganaranja, and M. osa, respectively. These results suggest that there may be unique associations between some Myrmelachista species and their Coccoidea associates, unconstrained by the ant phylogeny. Our findings also provide insights on Coccoidea taxonomy, emphasizing NGS DNA barcoding as a tool to illuminate how ant-plant associations might have evolved.

Unveiling Cryptic Avifauna Diversity Using Nanopore DNA Sequencing: A Case Study in the Passerine Genus Emberiza

March 21, 2024 12:00 AM
Authors: Ainsley E Parkins, Sylvia Lee, Elizabeth J Heath, Thomas Petitjean, Kyle Cink, Kyle Kittelberger, Cagan Sekercioglou, Rodolfo S Probst. Mentors: Rodolfo S Probst. Insitution: University of Utah. Biodiversity loss poses a significant threat, requiring accurate species assessment and conservation strategies. Non-invasive and cost-effective techniques should be prioritized, especially when dealing with threatened vertebrate fauna. By focusing on cryptic Eastern European species within the genus Emberiza (Passeriformes: Emberizidae), we designed an affordable molecular pipeline (including DNA primers and bioinformatics) integrating DNA barcoding with Nanopore sequencing to address species boundaries and provide conservation information for avifauna diversity. We conducted non-invasive DNA extractions from individual feathers of 192 specimens collected in the Aras River Riparian Corridor (ARRC), an important ecological hotspot in Turkey. By targeting the cytochrome oxidase subunit I (CO1) region, our goal was to differentiate Emberiza taxa and identify potential cryptic lineages while using cutting-edge next-generation sequencing (NGS) of multiplexed specimens with portable Oxford Nanopore Technologies. Our focal study examined boundaries in Emberiza subspecies (E. shoeniclus shoeniclus and E. shoeniclus caspia) with subtle morphological differences, utilizing DNA barcoding and Nanopore sequencing. We obtained 182 Emberiza DNA barcodes. Clustering analysis recovered a paraphyletic assemblage (n=32) and a clade, the latter recovering majority of the barcodes (n=150), separated by at least 8% genetic difference. In both cases, we observed a mixture of barcodes from the nominal subspecies and Caspian subspecies, suggesting that cryptic morphological characteristics are not reflected in genetic separation. Our results also suggest putative cryptic Emberiza species, highlighting the importance of the ARRC for conserving avian diversity. We demonstrate that our pipeline, integrating real-time Nanopore sequencing with non-invasive DNA barcoding, can be used for conservation initiatives (particularly aiding cryptic species identification). This study expands our knowledge of avian diversity and highlights the potential of NGS DNA barcodes as a powerful tool for aiding conservation efforts amidst biodiversity loss.

Murine Model of Hepatitis Delta Virus-Associated Salivary Gland Impairment

March 21, 2024 12:00 AM
Authors: Alexander Romano, Matthew Hesterman, Rachel Hill, Melodie Weller. Mentors: Melodie Weller. Insitution: University of Utah. Sjogren’s Disease (SjD) is an autoimmune disease diagnosed by symptoms of reduced tear and saliva excretion, accumulation of lymphocyte foci in the salivary glands, and the occurrence of antibodies against Ro (SSA), La (SSB), and nuclear proteins. The cause of SjD is unknown, though previous studies have detected the sequence and antigens of Hepatitis Delta Virus (HDV) in the minor salivary gland acinar, ductal, and adipose cells of patients with SjD; without the typical presence of a Hepatitis B coinfection. In this study, murine models were transduced with Adeno-associated virus containing expression cassettes for Luciferase (control), small, large, or a combination of both small and large HDV antigens to evaluate the impact of HDV antigen expression on salivary gland function and SjD autoimmune disease development. After a ten- or four-month period, the models were analyzed. Findings included a significant increase of inflammation for samples expressing both small and large HDV antigens, a significant increase of anti-SSA(La) antibodies in samples expressing the short HDV antigen, and a correlation between increased overall inflammation and decreased overall saliva flow. Performing qPCR methods verified the amount of HDV in the submandibular glands and Illumina sequencing portrayed an increase in glycolysis and beta oxidation metabolism in models with detectible HDV sequence. The models showed significantly increased IgM expression in the HDV exposed murine models, without significant change of other antibodies. Future plans include an ELISA diagnostic assay to verify the antibody levels and further sequencing analysis. With this information we can build a better picture of the direct mechanisms of HDV-mediated changes in salivary gland dysfunction and determine the extent that HDV can inducing systemic SjD symptoms.

Optimization of Subcritical Water Hydrolysis of Microalgae Biomass for Clean Meat Production

March 21, 2024 12:00 AM
Authors: Bradley Lawson, Lukas Keller, Marshall Burrows, Sam Perkins, Emery Wheeler. Mentors: Ronald Sims. Insitution: Utah State University. Subcritical water hydrolysis (SWH) is a developing method of processing organic materials/waste without the use of acids and alkali materials. SWH lyses peptides differently than acid hydrolysis and can produce Maillard products, which have various effects in cell culture. In this study, a batch-mode pressure vessel with a semi-continuous sampling apparatus will be used to optimize temperature and retention time for the hydrolysis of Chlorella vulgaris biomass for the development of serum-free (or low-serum) cell culture media. Hydrolysis will be done at temperatures from 140°C to 300°C and retention times from 5 minutes to 30 minutes. The SWH products will be assessed for their general protein content, lipid content, bioactivity, and carbohydrate content. These efforts will be of use to Upside Foods in its efforts to create sustainable and ethical cultured meat products.

Using Past Ecosystems to Understand Modern Climate Change: A Case Study from Utah’s House Mountain Range

March 21, 2024 12:00 AM
Authors: Jane Damstedt, Kasey Cole. Mentors: Kasey Cole. Insitution: University of Utah. In this project, we are analyzing faunal remains recovered from Utah’s House Mountain Range in the Tubafore cave system to create a paleoecological baseline of life in that location over the past 1000 years. All animals have relatively consistent ecological tolerances and preferences, so comparing the data from the information obtained in this study with contemporary accounts of mammalian ecology in the same area will be useful in evaluating the role of anthropogenic climate change in mammalian ecosystems. In this project, I am identifying the animal remains to the lowest level of taxonomic classification possible to determine what kinds of species richness and environment were present at the time in which the animal was alive. Creating an accurate record of the animals found in this cave assemblage is critical because very little is known about the species richness of the Great Basin area. This data will then be stored and compared to modern zoological data, which came from online databases Actos and Vertnet. The information gathered from this project can be used to inform conservation and sustainability efforts aiming at preserving biodiversity in Central Utah’s Mountain Ranges.

Nonequilibrium Thermodynamics of Voltage-Gated Ion Channels

March 21, 2024 12:00 AM
Authors: Ada Cottam Allen, Mikhael T Semaan. Mentors: Mikhael T Semaan. Insitution: University of Utah. Regularly buoyed from thermodynamic equilibrium by complex and fluctuating environments, living systems must continually respond and adapt to external stimuli. Recent tools from stochastic thermodynamics place concrete energetic and entropic bounds on these processes, for systems arbitrarily far from equilibrium both in and out of steady-state conditions, and thus reveal mechanisms by which these systems absorb and dissipate energy to function. Here, we leverage these tools to simulate and calculate the thermodynamic signatures of several models of sodium and potassium ion channels---channels crucial to propagating action potentials in mammalian neurons---as driven by biologically-realistic action potential spiking protocols. Thus uncovering their detailed energetic responses to such complex environmental conditions, these results enable detailed comparison between the thermodynamic functionality of each channel type with driving one would expect in-vivo. When applied to competing models of the same channel, these tools also provide additional criteria for model selection; to this end, we close by calculating expected ionic currents, directly facilitating comparison with dynamically-driven patch-clamp experiments.

Impact of Inducible Depletion of Sequestosome-1 (p62) From Endothelial Cells On Intrinsic Arterial Stiffness

March 21, 2024 12:00 AM
Authors: G. Colton Gardner, Lynasi Gapelu, Sohom Mookherjee, Sihem Boudina, J. David Symons. Mentors: J. David Symons. Insitution: University of Utah. With the prevalence of cardiovascular disease increasing world wide and its precise mechanisms remaining elusive, the need for novel treatments is urgent. Autophagy is a conserved process whereby dysregulated intracellular proteins are escorted to the lysosome for recycling. Emerging evidence indicates that autophagy is important in maintaining endothelial cell (EC) proteostasis and function. My laboratory showed that autophagy repression in adult mice ECs produces arterial dysfunction, and indexes of autophagy are repressed in ECs of older mice and humans which display concurrent EC dysfunction. Sequestosome 1 (p62) tethers proteins and enables their entry into the autophagic pathway. The contribution from EC p62 to cardiovascular and metabolic function is unknown and experiments are needed to investigate this. Thus, p62 will be depleted from ECs of adult male and female mice (p62iEC-/-) via tamoxifen regimen, and results will be compared to animals wherein EC p62 is intact (CON). The efficacy and specificity of EC p62 depletion will be evaluated in ECs and vascular smooth muscle by qPCR and immunoblotting. Three adjacent 1 mm thoracic aorta sections will be obtained 14 days after the tamoxifen regimen. The central aorta section will be used to measure intrinsic mechanical stiffness by wire myography, with the other two used to find lumen diameter and intimal medial thickness. These measurements will help create Stress vs. Strain curves and the Elastic Modulus, which will be compared between the groups to show the differences caused by p62 depletion. We expect p62 depletion from ECs to increase intrinsic aortic stiffness.

A Metagenomic Analysis the Microbial Composition of Apis mellifera Pollen Preserves throughout the Foraging Season

March 21, 2024 12:00 AM
Authors: Sydney Larsen. Mentors: Joshua Steffen. Insitution: University of Utah. Pollen preserves are crucial to maintaining Apis mellifera’s hive health. This pollen provides bees with a source of protein, amino acids, lipids, and other nutrients that are vital for larvae development (Dharampal et. Al, 2019). In addition to providing these essential nutrients, bee collected pollen also provides the hive with an excellent source of external pollen-borne microorganisms. These microbes provide a variety of benefits including serving as a major dietary requirement for larvae, assisting in biochemical processes such as bee bread fermentation, and assisting in bee resistance to pathogens (Gilliam, 1997). Despite the importance that these organisms play on bee health, there is currently little research on how the microbial composition of bee foraged pollen changes throughout the foraging season in response to abiotic and biotic factors. Rapid advancements in DNA metabarcoding approaches and DNA sequencing technologies have made the assessment of hive level foraging patterns easily accessible. We attempt to leverage the benefits of these new approaches to characterize how microbial composition in pollen provisions changes in relation to shifts in foraging preferences. Here we describe general patterns plant foraging behaviors for two hives across a single foraging season. In addition, we describe the variability of microbial diversity associated with pollen across this same time frame. Our initial description plant and microbial communities present in pollen provisions suggest that pollinator foraging preferences play a significant role in pollen associated microbial communities. This will allow for further research into how the presence of specific beneficial microbes is affected by changes in climate, floral availability, pathogen presence, etc..ReferencesDharampal, P. S., Carlson, C., Currie, C. R., & Steffan, S. A. (2019). Pollen-borne microbes shape bee fitness. Proceedings of the Royal Society B, 286(1904), 20182894.Gilliam, M. (1997). Identification and roles of non-pathogenic microflora associated with honey bees. FEMS Microbiology Letters, 155(1), 1–10. https://doi.org/10.1016/s0378-1097(97)00337-6

A Glance into the Origin of Life through the Lens of the DNA Repair Enzyme MutY from the Lost City Metagenomes

March 21, 2024 12:00 AM
Authors: My Nha Quyen Tran, Cindy Greaves. Mentors: Martin Horvath, Cindy Greaves. Insitution: University of Utah. I have been studying the DNA repair enzyme MutY found at the Lost City thermal field 3000 feet deep in the Atlantic Ocean with conditions similar to those that may have shaped the origin of life. With no sunlight and very little oxygen, life at the Lost City is driven by chemical transformations in rocks at extremely high levels of pH and temperature. DNA in all organisms strictly follows base pairing rules in which A pairs with T and G pairs with C. We all think of oxygen as beneficial, but it can cause damage to DNA. Oxidized guanine (OG) violates the base pairing rules and pairs with A. This causes mutations, which can lead to changes in the genetic information. The mutagenic potential of OG was a challenge that had to be solved early in the emergence of DNA-encoded life. The enzyme MutY functions in suppressing mutations and therefore protects us from developing cancer by finding and removing A from OG:A mispairs. In my effort to replicate conditions at the Lost City so as to explore how the DNA repair enzyme MutY evolved to function in this strange environment I need to purify the enzyme. I used DNA cloning to attach the MutY-encoding genes to a soluble bacterial protein called GST that hopefully will make it easier to purify the MutY proteins. Encouragingly, these fusion proteins expressed well in bacteria and appeared to be soluble. I am now exploring different conditions looking for optimal enzyme activity, which I predict to be different from what familiar bacteria can tolerate. Basic science research on how DNA repair enzymes adapted to the strange environment at the Lost City may inform future translational applications to treat and cure cancer and thus ensure a healthy society in Utah.

Synthesis and testing of hydrophobicly-modified pyridyl-aza crown ethers as chelators of rare earth elements.

March 21, 2024 12:00 AM
Authors: William Lee, Rishab Nayak, Cecilia Knapp, Camila Soderholm. Mentors: Ryan Stolley. Insitution: University of Utah. Recent publications have shown pyridine carboxylate functionalized aza-crown ethers coordinate strongly to a number of rare earth elements. Considering their strong coordination, we have modified these crown-ethers with a number of hydrophobic moieties to allow for adsorption to non-polar substrates to enable packed bed isolation of these elements to address the broad use and limited availability of these elements.

Information Anatomy Over Partition Space

March 21, 2024 12:00 AM
Authors: Nathan Jackson, Ryan James, James Crutchfield. Mentors: Mikhael Semaan. Insitution: University of Utah. Symbolic dynamics allows for modeling---and designing for---the effects of imperfectly measuring a time series of data, by partitioning into a finite number of possibilities. The resulting time series of discrete symbols is then made especially amenable to information-theoretic methods for understanding its temporal structure and correlation. In particular, as long as the partitioning scheme is generating, the resulting estimations for entropy rate---the rate at which the process creates information---converge to a measure of chaos in the underlying system, a dynamical invariant.However, the entropy rate is not sensitive to what kind of generating partition: colloquially, an instrument must be at least accurate enough, but can be more fine-grained as desired. In contrast, its breakdown into a piece which affects future measurements (“bound”) and a piece which does not (“ephemeral”) depends quite dramatically on the choice of generating partition. We ask, then: is there a canonical partitioning scheme for which the full suite of information measures relate to dynamical invariants?To tackle this, we simulate the well-known tent and logistic maps, sweeping over all two-boundary partitions, calculating the full information anatomies for each. We find that ephemeral and bound information are extremized by the single-boundary coarsest generating partition, suggesting a canonical role for the simplest “good enough” instrument. The remaining multivariate measures, meanwhile, reveal hitherto-unseen structure in the process of imperfect measurement.

Lighting for Different Land Uses: A Case Study in Cedar City

March 21, 2024 12:00 AM
Authors: Sebastian Partida. Mentors: Jamie Spinney. Insitution: Southern Utah University. Lighting levels have an important role in influencing the ambiance and functionality of various land uses. To achieve specified goals while optimizing energy efficiency and sustainability, lighting intensity must be balanced. The purpose of this study was to compare light intensity for different land uses (e.g., residential, commercial, industrial, and recreational). This study measured light intensity (i.e., brightness) for a random sample of different land uses using a digital light meter within Cedar City, UT. GPS coordinates were also acquired in order to map the brightness data. As expected, the results revealed that residential land uses were the darkest, whereas commercial and industrial land uses were the brightest. The findings indicate communities have to maintain a balance between creating a warm and pleasant atmosphere and ensuring appropriate illumination for safety and security purposes. Energy-efficient LED fixtures and smart lighting systems, for example, can provide adjustable and programmable illumination settings that meet both aesthetic and safety requirements.

De novo genome assembly and annotation of Curculio sp. (Coleoptera: Curculionidae) provides insight into diapause evolution

March 21, 2024 12:00 AM
Authors: Daniel Davis, Paul B Frandsen. Mentors: Paul B. Frandsen. Insitution: Brigham Young University. The nut and acorn weevils of the genus Curculio (Coleoptera: Curculionidae) are a diverse group of beetles with a unique life history. A female weevil uses her rostrum (snout) that is about the length of her body to dig into the flesh of a developing hard-shelled seed and lay her eggs inside where they can safely develop into larvae. After the grown larvae exit their seeds, they spend one or more years burrowed in the soil near host trees. During this time they enter diapause, a state of suspended development to minimize the energy that they expend. Studies indicate that a major purpose of this behavior is to align their adult emergence with masting events (large scale seed production every 2-5 years) of their host trees. Between, and even within, Curculio species, there is significant variation in diapause lengths and behaviors (Higaki, 2016). This wide array of adaptive behaviors is a result of the coevolution between these insects and their various hosts. Here, we present a high quality genome of a Curculio species. With this genome, we discuss the genetic and evolutionary factors that have given rise to this unique life history of Curculio and future plans to compare the genomes of multiple Curculio to further unravel this mystery.

Diversity and community in macroinvertebrates of Timpanogos Cave, Utah

March 21, 2024 12:00 AM
Authors: Erika Frandsen. Mentors: C. Riley Nelson. Insitution: Brigham Young University. The Timpanogos Cave System consists of three caves in American Fork, Utah. In 2003, the National Park Service (NPS) commissioned Dr. Riley Nelson and laboratory students to conduct a survey of the diversity and abundance of terrestrial arthropod species found within the caves. Over the two years they sampled in Timpanogos Caves, they identified 55 species of macroinvertebrates in an unpublished report.In the 20 years since the last sampling, many environmental factors could’ve changed in these caves, contributing to an overall decrease in both abundance and biodiversity of fauna. Therefore, we repeated the sampling done by the Nelson lab in 2003-2004 for the duration of May 2023-October 2023 to compare the two time periods’ macroinvertebrate communities.The six taxonomic families found most abundantly in 2003-2004 continue to be the most abundant families found in 2023. Additionally, a new taxon of cave beetle Rhadine sp. not found 20 years ago was discovered early in our sampling of 2023. Despite the increase in visitation over the past 20 years, at this stage in the analysis, the macroinvertebrate community within the caves seems to have almost no loss of diversity. Additionally, the appearance of new taxa indicates that there is still more life and diversity within the caves left to discover.

Low Academic Self-Efficacy Predicts Higher Depression and Anxiety in Students of Color

March 21, 2024 12:00 AM
Authors: Nathaniel Call. Mentors: Chelsea Romney. Insitution: Brigham Young University. New college students may experience stressors like difficult academic work, new social environments, and living on their own for the first time. Students of color may experience additional stressors due to minority stress, experiences of racism, and unfamiliar social contexts. We collected self-reported depression, anxiety, and academic self-efficacy measures from 742 first-year college students. We found that students of color reported higher levels of depression, F(1, 733) = 11.04, p < .001, and anxiety F(1, 734) = 14.91, p < .001, compared to white students. Further, we found that white students reported higher academic self-efficacy, F(1, 742) = 9.97, p = .002, compared to students of color. This suggests that lower confidence in academic work is related to higher depression and anxiety in nonwhite students, r(661) = -.32, p < .001. Our study builds on previous research by providing a possible pathway through which students of color develop more depression and anxiety through lower academic self-efficacy compared to white students.

Social Effects of Bed Nucleus of the Stria Terminalis Corticotropin-releasing Hormone and Tachykinin 2 Neuronal Activation Using Optogenetic Stimulation

March 21, 2024 12:00 AM
Authors: Nicholas Poll. Mentors: Moriel Zelikowsky. Insitution: University of Utah. Social interaction is one of the chief drivers of evolution and natural selection. Animal interactions shape the ecological world and have shaped the world’s evolutionary timeline. Of the many types of animal interactions, one of the most influential to behavior and development is aggression. Many animals' aggressive behaviors and mechanisms are so distinct that their origins can be traced back to specific selective pressures. These pressures range from reproductive competition to predator-prey interactions and have apparent effects on many species’ developments. There are many stressors that can increase aggressive tendencies found in mammals, yet it’s clear that the neural bases that connect these stressors and their behavioral responses are understudied. The targeted brain region in this project is the bed nucleus of the stria terminalis (BNST). The BNST is a neurochemically diverse node of the extended amygdala that has been implicated in mediating stress and sensory information. It anatomically acts as a relay station between a number of different structures including the hypothalamus and amygdala. The BNST has been implicated to have a role in stressor-induced aggressive behaviors; however, the neural mechanisms that connect this region and these behaviors are relatively understudied. Corticotropin-releasing Hormone (CRH) in mammals displays upregulation following the introduction of a stressor and has been found to mediate aggression and anxiety. Similarly, tachykinin-expressing neurons have been shown to have a role in mediating aggression in mammals. While CRH and tachykinin’s link to anxiety and aggression is well supported, it is not clear to what extent it has on BNST. This project aims to provide data to support the role that CRH and Tachykinin 2 (Tac2) in the BNST have in mediating aggression in mice through optogenetic stimulation.

Adverse effects of Nr4a3 full body knockouts on adipose tissue

March 21, 2024 12:00 AM
Authors: Jared Carter. Mentors: Jeff Tessem. Insitution: Brigham Young University. Type 2 diabetes mellitus (T2D) is a chronic condition affecting nearly half a billion people worldwide. Symptoms of T2D include impaired glucose tolerance, decreased insulin secretion and significant weight gain. While the symptoms of T2D are well-documented, the underlying pathology remains unclear. Recent research has indicated the critical role of the nuclear receptor Nr4a3 in the development of glucose intolerance and weight gain. In individuals with T2D, the Nr4a3 promoter is hypermethylated, leading to decreased Nr4a3 expression. Elucidating the role of Nr4a3 in mitochondrial respiration in adipose will help define the mechanism of T2D onset and treatment. I studied mice with full body knockout (KO) for Nr4a3. These mice exhibited T2D-like symptoms, including impaired glucose tolerance, reduced insulin secretion and increased adiposity. I measured mitochondrial respiration in muscle, liver, kidney, and adipose tissue, with impaired respiration only observed in adipose tissue. This impairment in adipose tissue respiration correlated with an increase in the size of all adipose deposits, larger adipocytes, and expanded lipid droplets. Intriguingly, the analysis of electron transport chain and tricarboxylic acid complex proteins revealed no significant differences compared to control samples. Instead, the change in respiration was attributed to a reduction in active DRP1 protein, responsible for mitochondrial fission and maintenance. These findings have important implications for our understanding of T2D and its potential treatment strategies, which will be discussed in more detail.

Genetic Mutations in the Genomes of Mother-Offspring Pairs Shows Link Towards Nausea and Vomiting in pregnancy

March 21, 2024 12:00 AM
Authors: Dallin Oyler, Ana Alfaro, Kailee Myxter, Ben Brooks, Amanda Brooks. Mentors: Jessica Pullan. Insitution: Southern Utah University. Nausea and vomiting are common complications that occur in 70% of pregnancies. Hyperemesis Gravidarum (HG) is the most severe form of these symptoms and is estimated to be prevalent in 0.3-2% of pregnancies. Due to the fetal and maternal morbidity associated with HG, identifying the cause and treatment options for these women is a critical task in obstetrics. Research regarding the etiology of HG has been fairly recent and is still ongoing, however, evidence had directed to a positive correlation between increased levels of the serum protein GDF15 and HG symptoms. We hypothesize that polymorphisms in both maternal and fetal DNA plays a role in the upregulated GDF-15 seen in mothers experiencing symptoms of HG during pregnancy. The DNA of 2 mothers and their corresponding children were sequenced and analyzed. The DNA was obtained through buccal swabs from the epithelial cells of the inner cheek, and then purified and ran through PCR. We employed 3 distinct primers that correspond to mutations in the genome that account for the elevated levels of circulating GDF-15 in the mother. As of current, the mother-daughter DNA is still under analysis for single-nucleotide polymorphisms, however recently published literature has suggested results similar to our hypothesis. M. Fejzo et al. shows that upregulated serum GDF-15 is primarily of fetal origin, and that maternal sensitivity to GDF15 increases the risk for developing HG. Additionally, the DNA coding variant GDF15 C211G was shown to elevate the risk of HG

Reconstructing seasonality in African bovids using dental microwear

March 21, 2024 12:00 AM
Authors: Auriana Dunn. Mentors: Kathryn Sokolowski. Insitution: University of Utah. Reconstructing the diet of extinct animals can help us understand how living species are suited to their environments, which can inform paleoecological and zooarchaeological research as well as modern species conservation. Seasonal variation in animals’ diets can further be used to reconstruct seasonality patterns in the past and understand how animals may vary their diet under future climate change. However, determining the diet of extinct species is challenging, and detecting seasonal changes in diet is even more so. Dental microwear texture analysis (DMTA) can be a tool to solve this problem. DMTA analyzes dental microwear by measuring the pits and scratches on teeth to determine what an animal consumed in the days and weeks before it died. This project examines the DMTA of modern African Bovidae species to determine if seasonal dietary changes can be observed. If a difference can be found in the dental microwear of specimens that died during different seasons, seasonal changes in diet can be inferred. Here, I gathered dental microwear data from 407 specimens across five modern studies and matched the data to the museum specimens’ date of death to determine whether it died in a wet or dry season. The analysis found that four of the Bovidae species examined in our study showed evidence of seasonal diet shifts in their DMTA data. Dental microwear can be useful in determining seasonal diets and season of death for specimens. This method can be applied to extinct Bovidae species to understand ancient ecosystems and the evolution of Bovidae dietary strategies.

Unlocking the Mechanism Behind Depotentiation: A Cellular Model for Forgetting

March 21, 2024 12:00 AM
Authors: Justin Webb. Mentors: Jeffrey Edwards. Insitution: Brigham Young University. Understanding the mechanisms underlying depotentiation in the context of previously induced long-term potentiation (LTP) is crucial for unraveling the processes of memory consolidation and forgetting. Our research is focused on synaptic plasticity in the hippocampus, the primary brain region responsible for mediating learning and memory. Using electrophysiology and neuropharmacological techniques, our goal is to elucidate the cellular mechanisms behind depotentiation, a reversal of the increase in postsynaptic response and overall synaptic strength characteristic of LTP. By doing this research, we hope to both fill existing gaps and resolve conflicting views about the processes and receptors involved in depotentiation. Experiments were performed on hippocampal brain slices of young mice. We induced LTP in hippocampal CA1 neurons using high-frequency electrical stimulation, and then elicited depotentiation in the same neurons via low-frequency electrical stimulation. This creates a cellular event analogous to learning and subsequently forgetting a new memory trace. Our preliminary findings show that depotentiation still occurs in the presence of MPEP, a metabotropic glutamate receptor (mGluR5) antagonist, suggesting that the depotentiation mechanism is independent of mGluR5. Additionally, because female rodent models have largely been ignored in prior electrophysiology experiments involving LTP and depotentiation, we investigated and observed gender-related differences, which show female mice exhibiting more pronounced depotentiation than their male counterparts. Building on these findings, our research will continue to identify gender-related differences in both juvenile and adolescent mice, as well as explore the role of NMDA receptors on depotentiation. We will also extend the temporal gap between LTP induction and depotentiation to explore the impact of early-phase versus late-phase LTP on subsequent depotentiation. This research aims to shed light on the intricate mechanisms of synaptic plasticity and its implications for learning, memory, and potential therapeutic modulation of these processes in the context of conditions like Alzheimer's disease, post-traumatic stress disorder (PTSD), and other disorders of learning and memory.

Bridging the Gaps: Geo-Coordinated Land Patent Linking for Socioeconomic Analysis

March 21, 2024 12:00 AM
Authors: Zachary Flynn, Britton Davis, Josh Nicholls, Bryson Mumford. Mentors: Joseph Price. Insitution: Brigham Young University. The United States has massive amounts of public data and land ownership stretching back to the early homesteading period of the American West. This data has been of limited use for economic research because it only includes the name of the ownership, thus making it impossible to study racial and gender differences in land on ownership. We develop an innovative method for linking individual land records to US census records. Our key innovation is that we start by linking individuals with unique names that we can make from land record to census record based on name and town. We then use the geo-coordinates in the land records and the proximity of households on the census sheets to link other individuals that have more common names. This two-step process allows us to link 36% of a sample of people in the land records in Colorado to a census record between 1880 and 1940. This new linked data will be a valuable resource for individuals doing research on the development of the American economy, and also people doing genealogical research.

Going Green in a General Chemistry Teaching Lab: Assessment of Learning Outcomes

March 21, 2024 12:00 AM
Authors: Cooper Bell-Hunley, Ming Yu, Emily Heider. Mentors: Emily Heider. Insitution: Utah Valley University. Green chemistry involves the redesign of chemical processes and products to reduce hazards to the environment and human health. Reconsidering the teaching curriculum with a view to embrace green chemistry can reduce costs in waste disposal and has the potential to improve accessibility. This research involves the redesign of qualitative analysis general chemistry experiment to eliminate the use of teratogenic mercury (Hg) and neurotoxic lead (Pb). Making this change creates a more inclusive laboratory since expectant mothers should not be exposed to mercury and therefore some students did not feel safe completing the previous version of the experiment. With any change in curriculum, it is important to consider the impact on learning outcomes that students can achieve. This research details the assessment of learning outcomes with a quasi-experimental design. Instructors in multiple general chemistry labs selected the qualitative analysis experiment (with or without Hg and Pb) and learning outcomes achieved were assessed following the experiment.

Updated Third Generation Sequencing: Assembly Insights

March 21, 2024 12:00 AM
Authors: Danyon Gedris, Paul Frandsen. Mentors: Paul Frandsen. Insitution: Brigham Young University. Whole genome assembly has rapidly improved as third-generation sequencing technology like PacBio HiFi and Oxford Nanopore (ONT) have bridged the gaps of complex genomes by providing high-accuracy, long read data. The improvements in these technologies have resulted in long average read lengths (>15 kbp) and sequence quality scores above 99% (>Q20). They are particularly well-suited to assembling long, repetitive regions of the genome. Current assembly techniques combine reads with identical sequences to form longer, continuous sections. In repetitive regions, this process tends to condense the repeated sequences into one shorter read, instead of preserving the continuous nature of the repeats. Long reads avoid this issue by sequencing repeats together in one continuous read. Heavy chain fibroin (h-fibroin), the gene that encodes for the primary silk protein in Trichoptera and Lepidoptera, is long (often >20 kbp) and repetitive. Recent work showed that PacBio HiFi sequencing provided higher quality assemblies of h-fibroin when compared to the last generation of ONT pores (R9.4.1) and chemistry despite having a shorter average read length. Recent advances in ONT chemistry and nanopores (R10.4.1) have led to higher quality scores, perhaps allowing successful assembly of this gene region. To better understand the advances in ONT sequencing and its ability to provide high-quality, continuous genome assemblies of complex organisms, we assess the quality of assemblies of the h-fibroin silk gene for the Trichoptera species, Arctopsyche grandis and Parapsyche elsis, using the newest ONT chemistry.

Guiding Souls, Shaping Towns: Clergy's influence on Population Dynamics

March 21, 2024 12:00 AM
Authors: Seth Cannon. Mentors: Joe Price. Insitution: Brigham Young University. We use the occupation strings in the full-count US census files from 1880-1940 to create a new dataset of everyone during this time period that listed their occupation as a clergy (or related term). We use this data to identify the number of clergy located in each town in the United States in each census year. We find that towns with at least one person that identifies as clergy in the census record experience 5.4% greater population growth by the next census compared to towns without any clergy. This result is robust to various ways to control for the population and other characteristics of the town. We also focus on just the set of towns that had only one person in the census who identified as clergy. When we restrict the dataset to these towns, we find that the towns for whom that single clergy member died before the next census experienced an average population loss of 2.8%, while towns that didn’t have their clergy die experienced a population growth of 12.5%. These results highlight the ways in which access to local religious resources can help promote economic growth in small communities.

The use of ecological niche modeling to characterize the microhabitat of oak hybrids (Quercus undulata) in Utah

March 21, 2024 12:00 AM
Authors: Cate Bateman, Carson Veazie, . Sydney Sandall. Mentors: Matt Ogburn. Insitution: Southern Utah University. Western Utah is home to two distinct species of oak, Gambel oak (Quercus gambelii) and Dixie live oak (Quercus turbinella), which can hybridize to form an intermediate species that has been named Quercus undulata. In spite of previous research on these shrubs, we are still unsure of how the hybrid has survived in small isolated locations well outside of the range of one parent species (Dixie live oak, which is restricted in Utah to Washington, Kane, and San Juan Counties). Our primary objective was to perform an ecological niche modeling assessment of Q. undulata within the Three Peaks Recreation Area. Our approach included collecting plot-level data to determine abiotic and biotic niche factors correlating with the presence/absence of Q. undulata, including slope, aspect, soil type, soil chemistry, vegetation cover, and other associated woody plant species. Our results have shown that Q. undulata populations have higher concentrations in south-facing slopes, potentially reflecting the climatic preferences of its Dixie live oak parent. Results also showed that both focal species, Q. undulata and Q. gambelii, prefer areas with shallow soil and rocky outcrops. We plan to continue data collection and our analysis of soil type and chemistry. These results will help us to better understand the evolutionary history and ecological requirements of this fascinating native Utah plant.

Using Chimeric autoantigen receptor (CAAR) T cells to eliminate autoreactive B cells in autoimmune diseases

March 21, 2024 12:00 AM
Authors: Abigail Cheever, Chloe Kang, Hunter Lindsay, Mackenzie Hansen, Kim O'Neill, K Scott Weber. Mentors: K Scott Weber, Kim O'Neill. Insitution: Brigham Young University. Chimeric Antigen Receptor (CAR) T cell therapy is a modern technology that has become a widely accepted treatment for blood cancers such as lymphoma and leukemia. Recent studies have proven the successful application of CAR T cell therapies in autoimmune diseases as well. Graves’ Disease (GD) is an autoimmune disease that affects approximately 1 in 100 Americans and is the most common cause of hyperthyroidism. GD is mediated by anti-thyroid stimulating hormone receptor (TSHR) antibodies produced by autoreactive B cells. Our hypothesis is that a curative treatment for GD can be created by designing a CAR T cell that specifically targets the autoreactive B cells in GD, by using TSHR as a binding domain to act as bait for the anti-TSHR B cells. We selected TSHR epitopes for the binding domain of the CAAR T cell, and our anti-TSHR antibodies bound significantly to our engineered CAAR T cells. A target B cell line with anti-TSHR B cell receptors was engineered using the Nalm6 B cell line. Using primary human CAAR T cells, activation and cytotoxicity assays against anti-TSHR B cells shows that CAAR T cell therapy is an effective and promising method to treat antibody mediated autoimmune diseases like GD.

Lower Limb Asymmetries in Unilateral Jump Mechanics as Possible Risk Factor for Injury in Collegiate Wrestlers

March 21, 2024 12:00 AM
Authors: Jacob Armstrong, Tyler Standifird. Mentors: Tyler Standifird. Insitution: Utah Valley University. Lower Limb Asymmetries in Unilateral Jump Mechanics as Possible Risk Factor for Injury in Collegiate WrestlersJacob Armstrong and Tyler Standifird 1Utah Valley University, Orem, Ut. Injuries impose a multi-faceted burden on athletes, coaches, and sporting organizations, encompassing physical, financial, and psychological ramifications. Determining risk factors and identifying them in athletes has been a widespread goal amongst researchers and practitioners in attempts to reduce injuries. Investigating Limb asymmetries, or limb imbalances, has been a common approach in identifying such factors but has shown inconsistent correlations with injuries (Melony, 2018). Moreover, much of the current research investigates asymmetries of outward limb performance (i.e., Strength, flexibility, jump performance etc.) and not asymmetries of internal joint mechanics. Identifying relationships between internal joint asymmetries and lower limb injuries can further aid coaches, practitioners and sporting organizations in effectively identifying injury risks. Purpose: The purpose of this study was to investigate internal joint asymmetries of the lower limbs during unilateral jump testing and their association with injuries in collegiate wrestlers. Methods: 23 healthy Division 1 NCAA collegiate wrestlers performed single leg depth jumps from a 12-inch platform unto force plates (Bertec Inc 1000 hz). Additionally, markerless motion capture technology was used to collect video data using Qualisys Mocap cameras (Qualisys North America, Inc. Buffalo Grove, Ill). Imagery was then processed in Theia (Theia Markerless, Inc. Kingston, Ontario) to produce 3d joint locations for all the joints of the lower extremity. Each wrestler performed 3 jumps with the left leg and then 3 with the right leg for a total of 6 jump attempts. 7 total variables were calculated and recorded in Visual 3D software (Dolomite Enterprises, LLC. Tallahassee, FL) for each wrestler and leg: drop max vertical force, vertical loading rate on drop, peak knee adduction angle, peak knee abduction moment, peak knee adduction moment, peak knee flexion angle, peak knee extension moment. Averages, standard deviations and percent differences were also calculated and compared between limbs. Injury history data was also collected from each participant from the year 2021 - present day.Results: Averaging found asymmetries in peak knee adduction angle with the left knee being greater than the right by 4.9 degrees (p=0.001), peak knee abduction moment with the right knee being greater than the left by .95 newton meters (p=0.001), and peak knee adduction moment with the left knee being greater than the right by .44 newton meters (p=0.001). All significant asymmetries were found in the frontal plane. No significant asymmetries were found in the sagittal plane. Injury history report found a total of 24 seperate lower limb injuries within the described timeframe. 16 associated with the right limb and 8 associated with the left. A total of 5 ACL injuries, 8 MCL injuries, 5 LCL Injuries, 3 meniscus injuries, and 3 ankle injuries. Conclusion: Asymmetry trends in collegiate wrestlers potentially indicate that internal joint asymmetry is specific to sport or activity. Also, internal joint asymmetry could be a potential indicator for training protocols for overall better movement and health within the studied population. Asymmetrical values of the peak knee adduction angle, peak knee abduction moment, and peak knee adduction moment combined with the frequency of knee injuries of the participants indicate possible positive correlations between the magnitude of asymmetry discovered and injury risk.

Using a Pricking Method for Inoculating Drosophila melanogaster with Wolbachia

March 21, 2024 12:00 AM
Authors: Naavah Craze, crazen@byu.edu . Mentors: John Chaston. Insitution: Brigham Young University. Wolbachia are maternally inherited bacteria found in the reproductive organs of many arthropod species. These parasitic bacteria are influential in the reproductive fitness of the host and can affect a population’s male-to-female ratio. Wolbachia can only be cultured in living cells and current methods for inoculating hosts with this bacteria have low success rates. These factors make these bacteria difficult to study in lab environments. In this project, we test a pricking method for inoculating Drosophila melanogaster with Wolbachia. In this method, axenic, or bacteria-free, female flies will be pricked in the abdomen with a Wolbachia-coated needle. Eggs from these flies will be collected from 3 to 5 days after pricking and will be incubated. The offspring will be tested using gel electrophoresis to see if inoculation was successful. If successful, this method can be used as a simple and efficient way to introduce Wolbachia into Drosophila melanogaster. These inoculated flies can then be used in experiments to study the relationship between the bacteria and the host organism.

Comparison of Aposthonia ceylonica genome size to repetitive elements and the analysis of silk-coding sequencing and their proteins

March 21, 2024 12:00 AM
Authors: Lillian Davis, Paul B Frandsen. Mentors: Paul B. Frandsen. Insitution: Brigham Young University. Insects of the order Embioptera (webspinners) typically live in colonies that can cover the ground of entire fields with their silk-constructed galleries, providing them with camouflage from predators and cover from the rain. Uniquely amongst silk-producing insects, webspinners possess silk glands in their forelimbs and, like spiders, retain the ability to produce silk throughout their life history. They typically live together in semi-social colonies, feeding off of decaying plant matter. Previous studies have been limited to morphological descriptions of species, testing various qualities of their silk, and a few molecular studies based on short DNA sequences. Here we present the genome of Apostonia ceylonica, a webspinner species from India, providing the first embiopteran genome assembly, opening the door to a multitude of analyses. At a haploid size of approximately 3.1 gigabases, their genome is significantly larger than previous estimates, containing a significant number of repeating segments. This data provides valuable information for future studies into the genes that control silk production, information for identifying this species through meta-barcoding, and data that could improve phylogenetic trees. By evaluating the effect of repetitive elements on their oversized genomes, we gain insights into the evolutionary history of Apostonia ceylonica.

The Impact of Population Density on COVID-19 Case Numbers during the Omicron Surge: A Comparative Analysis of US Counties and Sweden

March 21, 2024 12:00 AM
Authors: Hazel Ticas, Daniel Scott. Mentors: Daniel Scott. Insitution: Utah Valley University. The COVID-19 pandemic’s results, though highly publicized throughout its early years, fell out of the media’s attention over time. Despite the lower volume of media coverage, the effects of the pandemic remain ongoing. In an effort to maintain accurate information about the most current impacts of COVID-19, this study will review relative COVID-19 case amounts compared to population density for four populations during the omicron peak between the years of 2021 and 2022.. The four populations are: counties in New York, United States; counties in California, United States; a collection of the largest counties from the other 48 United States, and the states in Sweden. The population density for each of the four populations was corrected using Google Maps in order to eliminate areas that didn’t have any residents, but were part of the county or state boundaries. Boundaries have been defined as anything thats stops the spread of COVID-19, said boundary can be geographical or self-isolation. We aim to analyze the data trends of how Omicron spreads in relation to population density and boundary effects by comparing the ratio of virus spreadability to boundaries on each population. The goal is to create a model that can be applied to COVID-19.

Whiter than a Toilet Bowl

March 21, 2024 12:00 AM
Authors: Tiba Hasan, Elise Larsen, McKell Gillins. Mentors: Jodie Lopez. Insitution: Utah Valley University. AbstractThis paper discusses studies that have researched the most effective forms of teeth whitening and the mechanism behind it. Studies discuss the oxidation of double bonds which in turn lighten the chromogens impacting the overall coloration of dentition. The three main forms of treatment that were considered in these studies include in-office treatment, at home treatment and OTC products. At home overnight bleaching proved to have the best results for both immediate and post 10 week results. At-home treatment under dentist’s care involves lower concentration of hydrogen peroxide or carbamide peroxide ranging from three to ten percent thus it takes longer time than in-office treatment (Leh, B. 2018). Factors such as food intake, beverages, smoking, and oral hygiene care can all impact the efficiency of bleaching methods. While some toothpaste brands, like charcoal toothpaste, claim to whiten teeth, research suggests that these abrasive toothpastes may lead to enamel wear. Furthermore, studies have compared the effects of chemical and herbal toothpaste and found that both can produce similar whitening effects. However, chemical products tend to be more harmful compared to herbal alternatives As dental esthetics have become increasingly important to western populations, more whitening products are readily available for consumer use. Studies warn about the adverse risks and effects of dental bleaching to be aware of for both the consumer and those applying or prescribing bleaching methods, therefore it is important for hygienists and others in the dental field to become educated and aware of the increasing bleaching product selection.

Investigating the Potential Toxic Dust Pool Generated by the Shrinking of the Great Salt Lake

March 21, 2024 12:00 AM
Authors: Kirsten Sanders. Mentors: Ruth Kerry. Insitution: Brigham Young University. The Great Salt Lake (GSL) found in the Salt Lake Valley is a remnant of Lake Bonneville. In the 1980s the GSL reached record high water levels. But by 2022, the lake has been drying up and reached record-low water levels. Previous research using seven years of Purple Air Network data has shown that particulate air pollution levels, PM 2.5 and PM 10, are worse within 10km of the Great Salt Lake. Other research investigating the distribution of toxic heavy metals (Copper, Arsenic, Lead, and Zinc) in topsoil samples from throughout the Salt Lake Valley showed that some of the highest levels of Copper and Arsenic pollution were found near Saltair among dried sediments on the shoreline of the Great Salt Lake. This study involved collecting numerous samples from the dried shoreline of the Great Salt Lake and analyzing them for their heavy metal contents using Xray Fluorescence. The heavy metals were then mapped and linked to sediment particle sizes and pH to indicate where the most toxic sediments are located, and where the sediments that are most easily picked up by the wind are located. The maps of heavy metals will be used with our analysis of the Purple Air Network and wind rose data from our previous study to show where toxic dust clouds are most likely to be an issue to the population. Links with 2016 Asthma ER visits and Hospitalizations will also be investigated.

Intersectionality in Science

March 21, 2024 12:00 AM
Authors: Britt Wyatt, Alyssa Habel, Jess Cusick, Heath Ogden, Josh Premo. Mentors: Dr.Britt Wyatt. Insitution: Utah Valley University. Vaccines are crucial to maintaining healthy communities as they provide immunological protection against a variety of infections (Geoghegan, S. et al. 2020). By providing immunity, vaccines prevent serious illnesses, reduce disease severity, and protect communities. However, in 2019 the World Health Organization (WHO) declared vaccine hesitancy (resistance to getting vaccinated) as one of the top 10 dangers to global health (Dubé, Ève, et al. 2021). Previous studies have shown that certain communities are more vaccine hesitant than others. For example, individuals who are religious, conservative, Black, and women have been found to be more vaccine hesitant than other individuals (Savoia, E. et al., 2021) (Gowda C. & Dempsey, A., 2013). Therefore, we wanted to investigate vaccine hesitancy at an open enrollment institution that serves a unique student population where ~70% of students are members of The Church of Jesus Christ of Latter-day Saints and ~30% are non-traditional (over the age of 24) (UVU IR, 2023). Compared to the overall 1.6% of individuals in the United States who are members of The Church of Jesus Christ of Latter-day Saints (Pew Research Center, 2023), the identities of the students attending the open enrollment institution are vastly underrepresented in education research that has been conducted at other institutions. To investigate vaccine hesitancy, a survey was given to 1,444 students in the beginning of the Fall 2023 semester asking questions around vaccine safety and support. Preliminary results indicate that 70% of non-religious students will choose to be vaccinated against known and new diseases compared to 37% of religious students. 53% of non-religious students think that vaccine mandates are appropriate compared to 25% of religious students. These results indicate more vaccine hesitancy with religious students compared to non-religious students. As religious students make up most of the student population, results can help inform instructors and/or other stakeholders on scientific literacy topics to support in the academic setting. Lastly, further investigation on the intersectionality of identities will be explored such as gender and religion as women make roughly 80% of health-related decisions in their family unit. If religious women are more likely to be vaccine hesitant, development of strategies to support those students in making evidence-based decisions could be a future aim.

Closely related Enterobacteriaceae species with antibiotic class and subclass resistance

March 21, 2024 12:00 AM
Authors: Coleman Judd, Alexander Beagley. Mentors: Michelle Culumber. Insitution: Weber State University. Due to the overuse of antibiotics in industrial, agricultural, and medical settings, antibiotic-resistant bacteria are becoming more prevalent in various unique settings. We set out with the goal of identifying antibiotic-resistant bacteria from the Great Salt Lake waterfront. After isolating colonies on agar containing the antibiotic Tetracycline, we performed 16S rRNA gene sequencing and identified three separate Enterobacteriaceae species all exhibiting varying levels of antibiotic resistance. We performed an array of biochemical and physiological tests to further distinguish the Enterobacteriaceae species. Full spectrum biochemical tests indicate two near identical species followed by a third, novel species as both a phenotypic and biochemical outlier. Antibiotic resistant bacteria within the Great Salt Lake region present an ever-growing dilemma of clinical and environmental danger that accompanies antibiotic resistant microbes.

The effect of microbiota on Drosophila melanogaster activity at low temperatures

March 21, 2024 12:00 AM
Authors: Cooper Johnson. Mentors: John Chaston. Insitution: Brigham Young University. The main goal of this project is to determine the relationships between microbes in the microbiota of Drosophila and the activity rate of Drosophila at low temperatures. Previous research has already determined that the microbiota leads to changes in fly activity levels at normal temperatures (Schretter, 2019). Studying the relationship at low temperatures with the method I will outline below will help us to have a more holistic view of how the bacteria affect fly locomotion and behavior. This holistic understanding can open doors for other projects that study if manipulation of the microbiota could have a specific desired effect on the fly’s behavior, and it can help us understand how the microbiota’s impacts are affected by drastic changes in temperature. In this experiment we seek to determine how each of 41 different strains of bacteria affects fly activity at temperatures of approximately 17 degrees celsius using several different metrics to measure both locomotion and social behaviors. These metrics would be collected simultaneously by placing flies in a chamber for Drosophila Video Tracking (DVT), which would use a camera and tracking software to record the above-mentioned metrics on fly activity. Using so many different metrics allows us to have a more holistic view of the flies’ activity and to be able to better determine exactly how the bacteria are affecting the flies. In order to connect the data with the microbiota, the flies would be separated into 41 different experimental groups and each group would be “mono-associated” with one of the 41 different above-mentioned bacterial strains. Mono-association means that each of the fly eggs would be bleached, and then divided in groups, with each group being grown in an environment containing a specific type of bacteria. This means that each fly experimental group would have one species of bacteria in their microbiota, and therefore we can associate changes in fly behavior to the differences in the Drosophila microbiota. Having determined which bacteria affect the fly activity at low temperatures, we would use Metagenome-wide association to determine which bacterial genes are causing this change. Metagenome-wide association involves comparing the genomes of bacteria shown to cause changes in Drosophila activity in order to identify the similar protein-coding sequences that may be the causes of these changes in activity. To confirm the findings at that stage, the genes are expressed in a bacteria that doesn’t express them normally, and flies are analyzed to see if the changes in activity persist. If they do, we can safely say that the changes are due to that specific gene sequence. We expect that the mono-associated flies will show differences in activity level, because it has already been established in a previous study that the microbiota in the flies has a statistically significant effect on the activity level of the flies, meaning that the presence of certain bacterial cultures in the flies lead to a difference in activity. Therefore, if there is no difference in activity level, it is most likely due to the low temperatures, and it may then be necessary to perform the experiment again at different temperatures to determine at what point the temperature negates the effect caused by the bacteria present in the fly microbiota. We aim to study the relationship between the microbes present in the fly microbiota and their activity level at low temperatures and identify the mechanisms by which the microbes affect the fly activity level.

Ecogeographic effect on color pigmentation: Assessing the application of Gloger's Rule in Robber Flies

March 21, 2024 12:00 AM
Authors: Lauryn Dupaix. Mentors: Riley Nelson. Insitution: Brigham Young University. Golger’s rule is an ecogeographic rule stating that animals in warm and humid climates are heavily pigmented, whereas animals in colder and drier climates are lightly pigmented. By using previously collected specimens of Proctacanthus sp. from across the U.S., we explore how this rule applies to several species of robber flies over time and geographic space. The average color of thorax was analyzed using a spectrophotometer which were used in correlation tests with climate measurements from where the specimen was collected. We found that this ecogeographic rule was not consistent in all four of the species of robber flies that were analyzed. Therefore, other studies of the applicability of ecogeographic rules are being assessed in this genus. This research helps define morphological variation in a widespread species and open avenues for more morphological analysis of insects in a changing climate.

The relationship between differential finger force in a squeezing task and spin characteristics of a four-seam fastball thrown by division-I collegiate baseball pitchers

March 21, 2024 12:00 AM
Authors: Anthony Cornwall, Dylan Snook, Travis Ficklin. Mentors: Travis Ficklin. Insitution: Utah Tech University. The purpose of this study was to discover any relationships between individual finger force capabilities of collegiate pitchers and the spin rates and axes of their four-seam fastballs. NCAA Division-I pitchers participated in the study. Using a hand-held dynamometer, multiple trials of a squeezing task were performed by each pitcher. Five trials were made using both index and middle fingers at maximum isometric effort. Then, in counterbalanced order, pitchers also duplicated the isometric squeeze isolating the index and middle fingers in one-fingered squeezes. Pitchers were constrained to make the maximum effort squeezes in a time frame similar to that of delivering a pitch.Spin axis and rate for their four-seam fastballs were taken from previously collected ball flight tracking using a field Trackman system. Analysis was performed for any relationships among axis tilt and relative finger contribution to total force, as well as spin rates with total isometric force. Additional relationships based upon anthropometric measures of the hand and fingers were also explored and the results are to be presented.

Causal Brain Networks in Insomnia

March 21, 2024 12:00 AM
Authors: Levi Pouwer, Keaton Helquist. Mentors: Jared Nielsen. Insitution: Brigham Young University. OBJECTIVE: To identify brain regions and networks underlying acquired-brain-injury-induced insomnia. BACKGROUND: In patients of tertiary-level mental healthcare facilities, symptoms of chronic insomnia are prevalent in 78.2% of the population. Additionally, among those who suffer from acquired brain injury, few symptoms are as generally pervasive as that of chronic insomnia. Meta-analyses of insomnia patients with fMRI data have failed to identify consistently affected brain regions. Individual studies have suggested several brain regions are involved in insomnia, including the anterior cingulum, orbitofrontal cortex, the insula, caudate nucleus, and the anterior capsula interna. However, few regions have consistently been implicated in the pathophysiology of insomnia. Moreover, little is known regarding the collective brain networks involving insomnia. DESIGN/METHODS: A comprehensive systematic literature review was conducted to identify case studies of individuals afflicted with acquired brain injury-induced insomnia (N=53). The review process was facilitated by employing Cadima, specialized literature review software. To establish a reference baseline for comparison, a substantial cohort of resting-state functional MRI (fMRI) scans from healthy control subjects (N=1000) was meticulously acquired. Subsequently, lesion network mapping analysis, as outlined by Fox et al. in 2018, was applied to the lesions observed in the 53 patients. This method allowed us to assess the impact on functional connectivity and analyze its implications by comparing the patients' lesion networks with the baseline scans obtained from healthy controls. RESULTS: In the context of lesion network mapping analysis, our study revealed that 45 out of 53 patients diagnosed with acquired brain injury-induced insomnia exhibited brain lesions that were functionally connected to both the left amygdala and the left anterior insula. Moreover, in 39 out of 57 patients, the lesion networks also included bilateral anterior insula and the hypothalamus. Comparative analysis of these lesions with a normative database unveiled a substantial disparity in functional connectivity to the left amygdala and left anterior insula in patients suffering from acquired brain injury-induced insomnia. This finding underscores the relevance of tissue within these regions and tissues functionally connected to these areas in relation to the onset of lesion-induced insomnia. CONCLUSION: The observed functional network connectivity among the left amygdala and the left insular region in relation to insomnia introduces a potentially more intricate mechanism underlying the onset of insomnia, in addition to the previously proposed factors such as hyperarousal in cortical regions and subcortical neuropathologies. Our findings highlight the possibility of a deeper connection between the initiation of insomnia and limbic structures, specifically emphasizing their role in emotion and sleep regulation. This suggests that the neural mechanisms influencing anxiety may have interrelated effects on the mechanisms influencing insomnia. It is evident that further investigation, particularly among psychiatric patients afflicted with insomnia, is warranted to delve into the activities occurring in these regions and to elucidate the potential interplay between anxiety and insomnia. This research paves the way for a deeper understanding of the complex relationship between neural pathways and the development of insomnia, ultimately offering valuable insights for future clinical and therapeutic considerations.

What brings us together: how global identity is influenced by images of success or suffering

March 21, 2024 12:00 AM
Authors: Jaiden Sherratt, Madison Ward, Alexandra Clements, Makenzie Vance, Christopher Furlow. Mentors: Julie Johnson Pynn. Insitution: Southern Utah University. Global identity is a concept once recognized by Maslow in 1954 as he said people “feel a kinship and connection, as if all people were members of a single family… Because of this, self-actualizing people have a genuine desire to help the human race.” Historically, it has been seen that this sense of global identity and citizenship can lead to great acts of kindness and empathy, as was the case with Chiune Sugihara who saved over 6000 Jews from Nazi oppression out of a sense of love for humanity (McFarland et al., 2013). It was also found that people with a strong global identity are more likely to be concerned about human rights and hold egalitarian views (McFarland et al., 2012). The research sought to answer the question, “Can images of global success or suffering affect subjects’ feeling of connection with humanity as a whole?” Through this research, we can better understand how positive or negative events impact people’s feelings of global citizenship. Participants will be recruited through the SONA system, as well as the researchers’ social media accounts, and a SUU portal announcement. Our main survey measure is the Identification With All Humanity scale. The scale is intended to measure an individual’s characteristics of concern for global issues and human rights, prosocial attitudes, intergroup forgiveness, and solving global problems (Hamer 2021). Participants were randomly assigned to one of two exposure conditions consisting of either 10 images of human success or 10 images of human suffering. Participants took the adapted IWAH survey, then were exposed to one of the two image sets for five second minimum per image, then took the adapted IWAH survey again to see if the images influenced their perception of global identity. After exposure, participants were asked “Did these images affect your feeling of connection with humanity? Why or why not? The images presented focused on issues of environmentalism. This research is currently in the phase of conducting the survey, and will close the survey gathering on November 1, 2023. Then the researchers will analyze the collected data to see if images of success or suffering influence global identity.

Information-Gaining Moves in Game Theory

March 21, 2024 12:00 AM
Authors: Kevin Young. Mentors: Gretchen Ellefson. Insitution: Southern Utah University. The concept of competition is not new to humans, nor is it simple. Countless philosophers throughout the years have approached competition in many ways. One of the core subjects that philosophers have used to discuss competition is that of decision theory. Decision theory, in short, discusses the best things to do. Game theory, a subset of decision theory, discusses the same within the context of games, or in other words, strategy. Both of these subjects have been used to evaluate how best to win games of chance, games of choice, and games in between. I work to explore the concept of making moves to gain information, seeking to learn another person’s moves before you make your own. This subset of moves deserves recognition, especially within the modern eras of competition.

Preferential Capture of Bacteria Using pDA-coated Magnetic Nanoparticles

March 21, 2024 12:00 AM
Authors: Alyson Camacho, Camille Bryner, Bowen Houser. Mentors: William Pitt. Insitution: Brigham Young University. Current methods for the diagnosis of bacterial infections require time consuming cultures. To prevent deaths caused by sepsis, faster methods for bacterial identification and antibiotic susceptibility methods are urgently needed. Necessary to these faster methods is the ability to separate and concentrate bacteria. While techniques such as filtering and centrifugation have been explored for this purpose, we propose an innovative approach. Polydopamine (pDA) is a remarkably adhesive polymer that has been used to create antibacterial and anti-biofouling coatings on medical devices. In this study, however, we show how magnetic nanoparticles (MNPs) coated with pDA can selectively bind and remove specific bacteria from suspensions. For these experiments, pDA- MNPs were added to suspensions of bacteria mixtures and allowed to bind for 10 minutes. The MNP/bacteria mixture was then placed on a holder with a magnet which collected the MNPs on the side of the test tube. Finally, the bacterial supernatant was carefully removed and plated. Capture efficiency of the beads was calculated and it was shown that the pDA-coated MNPs preferentially isolated S. epidermidis from a suspension of both S. epidermidis and E. coli. This approach holds great potential for separating bacteria from clinical samples like urine or blood, enabling faster and more efficient diagnosis of bacterial infections.

The Portrayal Of Reality Through The Lens Of The Astonishing World Of Studio Ghibli

March 21, 2024 12:00 AM
Authors: Emma Manley. Mentors: Johnathan Chidester. Insitution: Southern Utah University. This presentation will be about the indescribable magical Studio Ghibli movies. Specifically, I will be analyzing how these movies are great at representing life. From the weird, outstanding world of Chihiro’s ghost town from Spirited Away, all the way down to the simple little Iron town of Princess Mononoke. These movies are amazing, not just for their remarkable art work and lovable characters, but for the relatability and symbolism of these stories. These stories are weird and strange, but so is everyone. We are human. A complex being that is evolving every single day. We have creative minds in all sorts of differing ways, and these movies are great at explaining this; they are complex, imaginative, and life-like. I will not be defining every single Studio Ghibli movie, but I have chosen a few movies I wish to expand on. My first one is The Wind Rises. This movie is based on a true story about Jiro Horikoshi, the designer of the A5M fighter aircraft. This story goes into detail about his life: his failures, his trials, and the hardships he endured. The second one is Spirited Away: this story is Studio Ghibli's most famous work. This is a story of a little girl who gets trapped in a spirit world all alone. Along her journey she makes new friends, discovers new ideas, and is able to discover who she is. The final movie is Princess Mononoke: Princess Mononoke is Studio Ghibli's masterpiece. The young warrior Ashitaka is strucken with a curse and will soon die. This story is about him getting rid of his curse, discovering how to make peace and stop hate.We should know and understand these movies, not because they are just films and that I like them, but because they are innovative and original. With these movies we jump into a creative world that we can make our own. These movies are relatable in every sense because they are just like us: weird, quirky, and just so compelling. We feel a connection to the trials that each character has because in a sense we all have been through something of the same. These movies represent life in a silly way that I wish to know more about. I will expand on the way these movies are made, the theme and writing, and the characters that we relate to.

Photographic Depictions of Polygamy from 1878-1953

March 21, 2024 12:00 AM
Authors: Holly Biesinger. Mentors: Ran Qi. Insitution: Southern Utah University. This study analyzes important intersections in the relationship that photography had with polygamy from the year 1878, when the gelatin dry-plate method of photography became commercialized, to 1953, when the Short Creek Raids occurred. The study focuses on the polygamist faction within the Mormon Church (The Church of Jesus Christ of Latter-Day Saints), specifically the group that later evolved into the Fundamentalist Latter-Day Saints (FLDS). It is important to note that not all members of the original Mormon church were polygamists, and as such this study does not represent the church as a whole. Additionally, it is important to note that the entire history of polygamy or photography will not be addressed, but key points of intersection will be acknowledged. This study describes how photography that contained polygamist subjects shifted over time and established a narrative for the outside general public to understand.

Pandemic Effects on the Work From Home Market

March 21, 2024 12:00 AM
Authors: Eve Christensen, Chase Redd, Bailey Uzzardo. Mentors: Elijah Neilson. Insitution: Southern Utah University. The advent of the Covid-19 pandemic in early 2020 brought with it a host of changes to the workplace. One change in particular was the wide-spread transition to remote work as opposed to in-person work as concerns with spreading the Covid-19 virus necessitated a shift in how the labor force performed their work. The Covid-19 pandemic created more opportunities for employees to work from home rather than working on site. This paper seeks to evaluate the correlation between working from home and earnings using an econometric model. By comparing an individual’s earnings before and after the Covid-19 pandemic, along with whether they work from home or on site, we hope to better understand the effect that remote work has on a person's decision to enter the job market and which fields the incoming labor force are pursuing. Our findings will also be relevant to employers as they evaluate what a competitive wage would be depending on the availability of work from home options for a certain job.

Feminine versus Freakish: The Silence of the Lambs and TERF Rhetoric

March 21, 2024 12:00 AM
Authors: Kenna Johnson. Mentors: Nicole Dib. Insitution: Southern Utah University. My paper is an interpretative analysis of Thomas Harris’ 1988 novel The Silence of the Lambs as analyzed through the lens of feminist film critic Laura Mulvey’s concept of the masculinization of spectators. In her essay collection Visual and Other Pleasures, Mulvey discusses how cinema, as a traditional medium, has misogynistic, voyeuristic characteristics. Through camera angles and editing, the audience is subconsciously led to identify with the protagonist (who is typically male). As a result, we, the audience, follow his gaze to his object of desire: the woman. This phenomenon she deems the masculinization of spectators. In my paper, I have applied Mulvey’s theory to Harris’ novel and concluded that the masculinization of spectators is, in fact, subverted in The Silence of the Lambs. Here, the audience identifies with Agent Clarice Starling, a young FBI trainee. We follow her gaze to the man she has been tasked with hunting: Jame Gumb, who is referred to colloquially throughout the novel as “Buffalo Bill.” Throughout my paper, I analyze the stark differences in characterization between these two. While Starling is depicted as a pillar of feminine strength, Gumb, a male to female transgender character, is depicted as gaudy and grotesque. In comparing the notable differences in characterization, I determine these characters to serve as each other’s foils. Having been denied as a candidate for gender reassignment surgery, he creates a ‘girl suit’ out of his victims’ skins as an attempt to pass as a woman. Gumb’s atrocities paint the transgender population in a monstrous light; Starling’s actions, conversely, portray her as fiercely independent, and a hero for the feminist cause. Drawing from this analysis, I argue that The Silence of the Lambs is a stark support for the trans-exclusionary radical feminism, or TERF, movement. Through an in-depth analysis of the literary symbols present in the novel in conjunction with the two main characters’ characterization, I determine that TERF rhetoric beats strongly underneath the novel’s surface feminism.

Bacterial Separation by poly-Dopamine Coated Magnetic Nanoparticles

March 21, 2024 12:00 AM
Authors: Camille Bryner, Alyson Camacho, Bowen J Houser. Mentors: William G Pitt. Insitution: Brigham Young University. In an attempt to combat a growing number of nosocomial infections related to medical devices, many studies have investigated the effect of polydopamine (pDA) coated surfaces on biofilm formation and found them to have antibacterial and anti-adhesive properties. However, we discovered that pDA coated magnetic nanoparticles (MNPs) display strong attractive interactions with many, but not all, species of bacteria. Fe3O4 MNPs were prepared using sodium acetate, ethylene glycol, and iron (III) chloride hexahydrate solutions and characterized by a variety of methods. XRD data confirmed a magnetite pattern characteristic of Fe3O4, then TEM characterization of MNP samples showed successful pDA coating onto iron oxide particles. Bacterial capture efficiencies (CE) by pDA-MNPs for 8 strains of bacteria were measured by optical turbidity and plate counts. We have found that CE is a function of exposure time to and concentration of MNPS; thus some experiments were done with constant exposure time and variable MNP concentration and others were done at variable exposure times and constant MNP concentrations. Additionally, these pDA-MNPs exhibit extremely efficient adhesion to some bacteria such as Staphylococcus epidermidis (S. epidermidis) while being ineffective at capturing some strains of Esherichia coli (E. coli). We propose that such capture ability of pDA-coated MNPs can be employed for detection and identification of bacteria in hospitals and for food science quality control.

Bloom's and SOLO: A Comparison of Educational Taxonomies

March 21, 2024 12:00 AM
Authors: Spenser A Clark. Mentors: Acacia Overono. Insitution: Utah Valley University. It is not uncommon for a college student to see a list of learning objectives when skimming through a syllabus for a program or course. The goal of learning objectives is to set reasonable expectations for student learning and guide their study, as well as providing a framework for the development of teaching practices and assessment. Part of the inception of learning objectives as a means of organizing teaching and assessment in the classroom may be attributable to the Taxonomy of Educational Objectives, more commonly referred to as Bloom's Taxonomy. Another taxonomy similar to Bloom's, but much less well known, is the Structure of Observed Learning Outcome (SOLO) taxonomy. Bloom’s taxonomy organizes learning objectives into six categories: Remember, Understand, Apply, Analyze, Evaluate, and Create. The categories are structured as a cumulative hierarchy in which mastery of each level is assumed necessary for progressing to the next. The structure of Bloom’s is not derived from any specific learning theory, but a categorization of pre-existing learning objectives. Bloom’s therefore suffers from a lack of a strong theoretical foundation and may not accurately reflect how learning actually occurs. Additionally, although Bloom’s has been widely employed in the context of educational assessment, research has shown that it suffers from low interrater reliability and is inconsistent between educational contexts such as courses and topics. Unlike Bloom’s, SOLO is based upon Piaget’s Stage Development theory and categorizes learning into five distinct stages: Prestructural, Unistructural, Multistructrual, Relational, and Extended Abstract. SOLO does not suggest that learning is unidirectional or hierarchical. It also acknowledges internal cognitive processes rather than focusing solely on observable behaviors. Although very little research has investigated its reliability, it could be an attractive alternative to Bloom’s because it may more accurately reflect how learning occurs. The present work reviews the development and implementation of these two models and compares them.