Engineering

Craig Daniels, Brigham Young University Engineering Martensite is a steel phase that has a body-centered tetragonal crystal lattice. It significantly affects the material properties of steel, particularly hardness and strength. Electron Backscatter Diffraction (EBSD) is a microscopy technique that is used to characterize the crystal and grain structure of metals by analyzing diffraction patterns. Martensite is traditionally difficult to identify using EBSD techniques because its diffraction patterns are too similar to the ferrite phase, which is body-centered cubic (BCC). The martensite crystal is modeled as BCC, but with an imposed tetragonal strain. “High resolution” EBSD can reveal the absolute strain of the crystal lattice, and is sensitive enough to measure the strain imposed in the model. This technique uses cross-correlation to compare experimental diffraction patterns to kinematically simulated patterns, and returns the absolute strain tensor. The tensor is rotated into the crystal frame, and the principle strains are used to create a tetragonality index. This tetragonality index can then be used to identify martensite. Further, the lattice parameters of martensite are related to the carbon content. A theoretical tetragonality index can be created using only lattice parameters. If the experimental index can be fitted to the theoretical index, this technique could be used to characterize the carbon content of steel at a sub-grain level.

Nathan Madsen, Brigham Young University Engineering A scatterometer is a type of radar used to measure the backscatter of the earth’s surface. In 2014, NASA will launch a new scatterometer, RapidSCAT, and mount it on the International Space Station (ISS). An integral part of the processing code for RapidSCAT is the X-table. X relates the power received by the scatterometer to the backscatter of the surface. It depends on the antenna, processor, and frequency of the sensor, as well as the sensor’s position, velocity, and attitude. The ISS’s comparatively unstable orbit renders previous methods of X-table generation inaccurate. By incorporating position, velocity, and attitude data from a revolution of the ISS, a table that is accurate for that revolution has been produced. This table can be made accurate for up to 8 revolutions of the ISS, by parametrizing variations in X with another variable. Different methods of estimating the relationship between these variables are attempted. Because the table will have to be recalculated repeatedly through the mission life of the sensor, tradeoffs between accuracy and processing time are explored.

Benjamin Lindsay, Brigham Young University Engineering Current treatments for cancer and diseased tissue often cause severe side effects due to drug interactions with healthy cells. In order to minimize these effects, we are developing a nano-scale near-infrared (NIR) light-responsive drug delivery system based on liposome-encapsulated perfluoropentane (PFC5) emulsions with gold nanorods in the PFC5 phase. The nanorods efficiently convert NIR light to heat, vaporizing the liquid PFC5 emulsions, which have boiling points near body temperature. Emulsion vaporization increases the volume inside the liposome enough to burst the phospholipid bilayer and release encapsulated cargo. This system will allow continuous therapeutic drug release localized at the site of NIR laser irradiation with a low-power, portable NIR laser diode. To date, we have successfully loaded PFC5 emulsions with gold nanorods and have loaded liposomes with PFC5 emulsions. Previous work in our lab has shown that a release to the cytosol of cells can be induced by ultrasound using similar liposomes. Experiments designed to demonstrate NIR laser-induced cargo release are currently in progress. We will continue to improve upon this system over the coming months to increase release and decrease the required laser power.

Jason Ellers, Utah Valley University Engineering Field Programmable Gate Array (FPGA) technology is becoming more popular among Application Specific Integrated Circuit (ASIC) developers. The ease of development and the maintainability makes FPGAs a very attractive option in many performance and efficiency critical applications. The purpose behind this project was to implement an arcade style game on top of a VGA driver. The project was developed on a Xilinx Spartan-3E Starter board using Verilog, a hardware descriptive language.

Erika Handly, Brigham Young University Engineering The development of an effective treatment for cancer is one of the most important goals for research today. One method of treatment is a targeted delivery mechanism using encapsulating drug carriers paired with a release mechanism. The Pitt laboratory has developed a potent chemotherapeutic called eLipoDox that uses a liposomal delivery construct combined with ultrasound release. eLipodox is composed of a liposome that encases an emulsion and the drug Doxorubicin. The emulsion droplet is a perflourocarbon stabilized by a lipid bilayer that contains a high vapor pressure solvent that will expand and burst the liposome upon sonication. The liposome is an artificially made lipid bilayer membrane that effectively encases the drug and does not allow the drug to diffuse freely through the body. Doxorubicin works through intercalating DNA, or distorting the structure of DNA, which is effective in treating tumors. However, it can cause heart failure and thus can have deathly effects for human patients. Encapsulating Doxorubicin minimizes the effects of Doxorubicin to other parts of the body while increasing the efficiency of the drug. Currently, the efficiency of loading the chemotherapeutic drug into the liposome is only around 34 to 38 percent, which is not ideal due to how expensive the drug is and the labor required to make the carrier. Thus, the purpose of this research was to systematically examine loading parameters and test the optimized carrier on a human cancer cell line. Higher temperature, greater sonication rounds, and lower concentration of drug on the exterior all correlated to greater loading efficiency. Cell death was also demonstrated with the optimized construct.

Varvara Jones, Utah Valley University Engineering Mobile devices are promising tools today to people’s life thanks to lower-cost hardware, steep subsidies from wireless carriers and the popularity of mobile apps. Equipping with touchscreen is the point of fulfillment for all that a mobile device promises to deliver to normal users. However, few mobile devices today have been built that address accessibility and usability of the touchscreen for a wide range of physical capabilities and challenges. In this research, we investigate human capabilities, environmental factors and hardware ergonomics that can improve the usability when people with impairment disabilities use a touchscreen-equipped mobile device.

Shana Black, University of Utah Engineering Goals: The pudendal nerve (PN) was targeted in attempt to create controlled micturition via intrafascicular electrical stimulation (IES) following the onset of surgically induced incontinence. We investigated both the effectiveness of unilateral and bilateral transection of the PN in creating a model of urinary incontinence and the ability of IES of efferent fibers to excite the external urethral sphincter (EUS) in order to restore a controlled voiding pattern. High Density Utah Electrode Arrays (HD-USEAs) were used to provide IES in these studies.

Dayton Minore, Brigham Young University Engineering Microwave scatterometers, which use radar backscatter measurements from satellites to infer wind vectors near the ocean’s surface, have the ability to monitor global wind speeds at high resolutions. Such data is used for weather forecasting and climate research. However, scatterometer observations can be contaminated by land proximity. Consequently, current methods do not use measurements within 30 km of the coast (about 10.6 million square kilometers worldwide) in the data set. This unused data can be utilized by a recently developed algorithm that can measure winds as close as 5 km to the coast. The author proposes that areas near land can be systematically targeted for special processing, providing valuable near coastal wind data. To demonstrate the effectiveness of the targeting method on a global scale, a sample 4-day data set will be processed. The data is to be stored and published in compatible file formats to current wind data, so that it will be easily usable by wind-vector users.

Jeremy Hunt, Brigham Young University Engineering Unnatural amino acid incorporation is a power tool in the synthetic biology toolbox that allows for unique residue chemistry to be incorporated into proteins. This technology has many promising applications in areas such as protein-protein interaction, biotherapeutics, biosensing, and biocatalysis. One challenge of uAA-incorporation is the current inability to properly predict the impact of the novel uAA-residue chemistry on proper protein folding and function. Therefore, a screening technology would be desirable to rapidly assess the viability of uAA-incorporation sites. Cell-free protein synthesis (CFPS) provides a promising basis for rapid screening technologies. The open environment of CFPS has a variety of advantages over conventional in vivo systems, such as direct monitoring, selective protein expression, and facile deployment of synthetic pathways. Another primary benefit CFPS has over in vivo expression is the ability to directly express proteins from PCR-generated products, known as linear expression templates (LETs). The use of LETs decreases the labor and time to expression of recombinant proteins. Thus, LET-based CFPS is a propitious system for rapid screening of uAA-incorporation. Here we demonstrate uAA-incorporation using LET-based CFPS and identify how this technology can significantly reduce time and labor to rapidly express proteins containing uAAs.

Jacob Robinson, Brigham Young University Mechanical Engineering Figure skating is a competitive sport that requires athletes to practice up to 5 days a week year round performing 50 to 100 jumps per day. This results in high, repetitive impact forces on the skater’s body which may lead to overuse injuries. While the negative effects of figure skating are well documented, the cause of these injuries is still unclear because the complexity of artistic figure skating limits current instrumentation from accurately measuring impact forces. This project has sought to fill this void by developing a force measurement system that will allow the figure skater to perform their jumps without any hindrance while accurately measuring the magnitude of the impact forces in the vertical and horizontal directions. Using strain gauges attached to the stanchions of the ice skate combined with a data collection system that attaches to the bottom of the boot, we have developed a prototype that accurately measures the forces produced in the ice skate. This will lead to a fully developed ice skate measurement system which will be used by researchers to investigate the impact forces generated in figure skating jumps and landings.

Connor George, Utah State University Electrical and Computer Engineering The SABER instrument, aboard the TIMED satellite, measures optical data regarding parameters of the Earth’s atmosphere with respect to altitude. Approximately once per minute, SABER performs a limb-scan measurement on the Earth’s atmosphere from which altitude emission profiles of key atmospheric gasses, including hydroxyl at wavelengths of 1.6 μm and 2.0 μm, are derived. Most hydroxyl profiles within the SABER dataset contain a single peak in the airglow altitude profile centered near an altitude of 87 km, but a significant portion of the profiles display two or more local maxima. MATLAB code was written to analyze the geophysical and temporal global distribution of the multiple-peak profiles. Graphs have been created which display relationships between the percentage of multiple-peak profiles and the local time, the cardinal orientation of the SABER device, and the latitude and longitude at which the atmospheric profile was measured. Patterns have been observed in multiple-peak profile distribution with respect to these variables. Possible causes of the multiple-peak occurrences in the hydroxyl altitude profiles include waves, geometrical effects of the SABER instrument, and/or chemistry of the atmosphere. In addition to graphing software, analysis software was written which counts the number of peaks present in any given altitude profile, and which ascertained the percentage of profiles displaying multiple-peak characteristics. A small (<1%) portion of hydroxyl altitude profiles were found to have abnormal distributions due to erroneous or noisy data collected by SABER. Software has also been written to remove such exceptions from the dataset. Additional investigation into the relationship between multiple-peak occurrences and cardinal direction orientation of the SABER device is required in order to further identify the causes for multiple peak profiles. An investigation into seasonal patterns for multiple-peak profiles is to be conducted. As the dataset grows, exception software will be updated to identify invalid altitude profiles. Also, ozone has been found to have multiple-peak altitude profiles similar to those of hydroxyl, and studies complementary to those performed on hydroxyl altitude profiles will be performed on ozone.

Derek Chang, University of Utah Bioengineering Atrial fibrillation (AF), the most common cardiac arrhythmia, is a rapid, irregular heart beat arising from uncontrolled and asynchronized electrical activation in the atria. This disruption of the normal electrical signaling hinders the contraction of the heart, leading to decreased blood flow, possible clot (thrombus) formation, and an increased risk of stroke. The left atrial appendage (LAA) is a small muscular pouch of highly variable anatomy within the left atrium. The LAA plays a prominent role in thrombus formation in patients with AF because of decreased blood flow within this structure. Thus, we hypothesized that the shape of the left atrial appendage is different in AF patients with a documented history of stroke. We used statistical shape analysis to determine which LAA shape variations contribute to stroke based on a cohort of AF patients who had both MRI and CT scans and a documented history of stroke. We manually delineated the boundaries of the LAA from each patient’s CT and MRI scans to analyze the resulting LAA segmentations for shape variations across imaging modalities and history of stroke. The results showed that patients who have AF and a history of stroke have an LAA with a narrower insertion site into the left atrium and are larger in size. In contrast, patients who have AF, but no history of stroke, have an LAA with a wider insertion site, which are smaller in size. By isolating specific LAA shape variants indicative of an underlying risk of stroke, we can use this shape classification scheme to better tailor AF therapies to each individual patient.

Autumn Pando, Brigham Young University Mechanical Engineering The wrist is one of the most common sites for joint injury. Over two-thirds of 75,000 annual repetitive joint injuries occur at the wrist. Excessive or abnormal wrist forces are thought to be one of the main contributing factors, yet no characterization of normal wrist forces exists. The purpose of this research is to fill this lack by creating a systematic, quantitative characterization of wrist forces and torques experienced in daily life. This database will aid further research in developing better and more personalized treatments as well as improving design considerations for human-machine interfaces. Ten healthy subjects participated in the experiment. Subjects performed 25 activities representative of daily life (e.g. hygiene maintenance, food preparation, using technology). Electromyographic (EMG) sensors recorded wrist muscle activity and electromagnetic motion sensors recorded wrist kinematics. Each subject performed a calibration task prior to the experimental protocol to determine the proportionality constant between EMG activity and torque. Wrist force and torque were determined from EMG activity using a constant of proportionality (identified by calibration), muscle length, and muscle velocity. Co-contraction was computed from torque. Wrist muscle usage, forces, torque magnitudes, torque angles, and percentage of co-contraction at varying levels of contraction were characterized. The results indicate muscle use, forces, and torques are unevenly distributed.

Mitchell Dabling, Utah State University Civil and Environmental Engineering Water management and flood control are essential elements of civilization. Linear weirs (e.g. ogee crest, sharp crested, and broad crested weirs) are often used in irrigation channels or reservoir spillways to regulate the discharge and upstream water level during flood flows. As hydrologic data sets increase in size and accuracy, the highest probable maximum flood (PMF) discharge is becoming increasingly more accurate, and in many cases much larger than previous estimates. Because of this, an older weir may need to be rehabilitated to ensure it can pass the updated PMF discharge safely without upstream flooding. A nonlinear weir (e.g. labyrinth or piano key weir) can replace a linear weir in a channel or spillway to pass significantly more discharge without requiring increased channel width. The Utah Water Research Laboratory at Utah State University, with the help of Utah Mineral Lease Funds, has developed and published design data for multiple configurations of nonlinear weirs. In 2012, the Utah Division of Water Resources used this data to design a labyrinth-style nonlinear weir that will replace the spillway currently in use at Millsite Reservoir in Emery County. This rehabilitation project will significantly decrease the flooding potential of the surrounding area.

Kay (Beau) Freckleton, University of Utah Mechanical Engineering Current quad-rotors provide excellent maneuverability and opportunity for data collection in large scale areas such as agriculture, but lack the capability to maintain flight for an extended period of time. This is due primarily to a lack of energy supply, requiring operators to replace the battery source before the quad-rotor completes its designated purpose [1]. In this paper, we introduce a mechanism to enable flying robotic rotorcraft, such as quadrotors and helicopters which utilize vertical takeoff and landing, to perch similar to a bird. The mechanism is passive, using only the weight of the rotorcraft for actuation. Such a mechanism will dispel the need for multiple batteries by allowing the quadrotor to perch amid its designated flight course, recharge using solar energy, and complete data collection over large scale areas in less time. In previous research to this same end, biomimetic approaches were pursued, resulting in designs that looked similar to the legs and feet of birds. The design in this paper utilizes a Sarrus mechanism to convert rotorcraft weight into perch grip. We began by designing the mechanism for a range of cylindrical perch sizes. Using MATLAB, we developed a program to optimize the various mechanism dimensions needed to perch within this range while also maximizing the mechanical advantage of grip force. Using SolidWorks, a 3-dimensional model was created and manufactured with these dimensions. In testing, the mechanism successfully allowed a small RC helicopter to perch on a 4cm diameter rod with some resistance to external forces. However, in crash tests, the mechanism was unable to withstand certain moment forces and developed large fractures. Further research will focus on decreasing these moment forces’ ability to weaken the mechanism while optimizing perching capability.

Kimberly Uchida, University of Utah Bioengineering and Oncological Sciences Programmed cell death 4 (PDCD4) loses its function as a tumor suppressor when co-expressed with a specific binding partner, protein arginine methyltransferase-5 (PRMT5). A better understanding of the regulation of PDCD4-PRMT5 interaction may lead to cancer therapies targeted at restoring the tumor suppressive function of PDCD4. Using Xenopus laevis (frog) eggs to generate extract trapped in either interphase or mitosis, we found that PDCD4-PRMT5 interaction is regulated by the cell cycle. Full-length PDCD4 bound PRMT5 more robustly in interphase than in mitosis. However, a truncated version of PDCD4, that retained the PRMT5 binding site, bound PRMT5 equally in interphase and mitosis. These results indicate that there may be a component of full-length PDCD4 that occludes the PRMT5 binding site in mitosis. Furthermore, we found that both full-length and the truncated PDCD4 are preferentially phosphorylated in mitosis, but preferentially methylated in interphase. From these results we speculate that phosphorylation of PDCD4 in mitosis allows PDCD4 to fold upon itself and effectively block the PRMT5 binding site. Additionally, phosphorylation may prevent methylation even when PRMT5 can bind PDCD4, explaining the lack of PDCD4 methylation in mitosis. Such an inhibitory mechanism may be useful in therapeutically restoring the tumor suppressive function of PDCD4. Future research will be aimed towards completing our understanding of PDCD4-PRMT5 interaction in the cell cycle, such as proving our model in human cells.

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