2020 Abstracts

Terreros, Eduardo N.; Dr. Roberts, Andrew G. (University of Utah)
Faculty Advisor: Roberts, Andrew G. (University of Utah, Chemistry)

Chromatography is an indispensable tool in most chemistry laboratories, as it provides a way to separate multiple components within a chemical mixture. The separation can be evaluated by the use of various chromatographic methodologies that have been developed to target specific chemical properties (e.g. size, mass, molecular interactions) of the desired compounds. Chromatographic methods are utilized to gather qualitative information in order to observe more general trends, or quantitative data to further explore observations in greater detail.

Thin Layer Chromatography (TLC) is a well-established method for collecting qualitative data from chemical reactions. Although Quantitative TLC (QTLC) methods have been developed, they are limited due to their high complexity, and cost prohibitive nature. The advancement of a Semi-Quantitative Thin Layer Chromatography (S-QTLC) method will provide a quick, low cost method to track organic reactions. We developed a low-cost alternative that uses readily available materials to gather images of TLC plates and process them into semi-quantitative data. In order to achieve this, we have constructed a small image gathering box made of opaque acrylic fitted with two 254 nm UV lamps and a Raspberry Pi Zero W with a camera module to acquire the images. The images are imported to a PC and processed by a custom built MatLab function. We demonstrated that this system can be utilized to gather qualitative data. Current studies will validate semi-quantitative data collection and reaction tracking and work is currently being done to validate semi-quantitative data collection.

Fazio, Nicholas; Russell, Michael; Krapohl, John; Andrus, Brayden; Hansen, Marc (Brigham Young University)
Faculty Advisor: Hansen, Marc (Brigham Young University, Physiology and Developmental Biology)

PIM 3 is a proto-oncogene with serine/threonine kinase activity that can prevent apoptosis, promote cell survival and protein translation. Abnormal PIM3 activity contributes to tumorigenesis by phosphorylation of targets that release anti-apoptotic proteins. Pathological PIM3 expression is common in pancreatic and prostate cancer. Inhibiting this kinase activity can be used to therapeutically suppress uncontrolled cell growth in cancerous tissues. Synthetic inhibitors are being developed as therapeutics to treat PIM3 related disorders. Compounds derived from plants and natural sources have therapeutically-relevant biological activity. Additionally, they often well tolerated, making them important starting points for drug discovery efforts. A less widely used approach to discover the biological activity of molecules is built around using a large scale in-silico molecular screening, which has emerged as a critical drug discovery tool. Here, we screen a large (>100,000 compound) virtual library of natural product compounds for binding in the PIM3 ATP binding site, then validate compounds with using cell-based and immuno-based assays. This approach reveals PIM3 inhibition by a saponin scaffold, which suggests potential utility as a therapeutic or as a lead for further optimization.

Leininger, Sara; Minteer, Shelley; Rhodes, Zayn; Sigman, Matt; Pancoast, Adam (University of Utah)
Faculty Advisor: Minteer, Shelley (University of Utah College of Science, Chemisty)

In the effort to improve renewable energy as a response to the depletion of fossil fuels, one important aspect to consider is the availability of such sources. The supply of solar and wind power, for example, faces issues with intermittency. Therefore, it is crucial to develop reliable energy storage methods, with redox flow batteries (RFBs) being of particular interest given their potential low cost and high efficiency. RFBs operate similarly to conventional batteries, except the anode and cathode materials are dissolved in electrolyte solutions, and pumped into the electrochemical cell from external storage tanks. Within the cell, the anode and cathode species are separated by a membrane to prevent them from mixing, which would cause the battery to self-discharge. RFBs can utilize aqueous- or organic-based electrolyte solutions, with organic solvents being especially appealing, as the electrochemical potential window is larger than water. However, one major impediment of using organic solvent is the high chemical crossover rate of anode and cathode species through the membrane, causing rapid capacity fade of the battery. Several research studies have shown that the use of redox active polymers (RAPs) with high molecular weights, paired with a size-exclusion membrane effectively counteracts this problem. The resulting steric hindrance between the small pores of the membrane and these large molecules blocks any crossover from the active species. This study will include the construction of an RFB using two previously developed RAPs demonstrated to have high electrochemical cycling stability as electrolytes. By using RAPs as both anode and cathode materials, it is expected that chemical crossover will be minimized, and the lifetime of the battery will be elongated compared to an RFB with one or both species in monomeric form. This study will be significant in the advancement of RFBs, potentially leading to their widespread use for energy storage.

Phan, Anh; Jensen, Joseph (Utah Valley University)
Faculty Advisor: Jensen, Joseph (Utah Valley University, Physics)

We have measured the Surface Brightness Fluctuation (SBF) distances to 12 galaxies. SBF is usually used to measure distances to giant elliptical galaxies that have uniform ages and composition. On the other hand, galaxies that are more disk-shaped potentially have a range of ages, they may have an SBF and color gradient. Elliptical masks that match the shapes of disk galaxies can give a more accurate SBF and color gradient than circular masks. The purpose of this study is to measure the discrepancies between the SBF distances using the two types of masks. For giant elliptical galaxies, the two methods give similar results ($\leq$ 2\%). For disk galaxies, the discrepancies are bigger (up to 6\% difference).

Murley, Jordan; Stockard, Alyssa; Payne, Andrew; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

Brain-derived neurotrophic factor (BDNF) is implicated in varied physiological processes. Its main receptor in the central nervous system is tyrosine receptor kinase B (TrkB), and the main ligand for TrkB in the central nervous system is BDNF. It has been shown previously that activating TrkB can cause a downregulation of the chloride-exporting potassium chloride cotransporter 2 (KCC2), presumably resulting in a decreased chloride gradient. It is hypothesized that this down-regulation, caused by an increase in BDNF levels, creates hyperexcitable GABA neurons in the ventral tegmental area (VTA) due to a reduced efficacy of inhibitory currents. Here we investigate this mechanism of adaptation in the context of chronic alcohol exposure. We demonstrate that BDNF levels are elevated in the VTA during withdrawal from chronic alcohol exposure. We also observe that blocking TrkB activity decreases alcohol seeking behavior. Further, we investigate the expression patterns of KCC2 in connection with chronic alcohol administration. Additional work is underway to validate this mechanism and further elucidate its putative role in alcohol dependence.

Diaz, Paula; Baptista, Gabriella; Obray, J Daniel; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

The prevailing view is that enhancement of dopamine (DA) transmission in the mesolimbic DA system underlies the rewarding properties of alcohol. The aim of the present study was to help reconcile the relative insensitivity of DA neurons to ethanol in vitro (EC50 = 96 mM) with the sensitivity of DA neurons in vivo (EC50 = 3 mM). To do this we investigated the role of peripheral dopamine 2 receptor (D2R) mediated neuroimmune responses in ethanol enhancement of DA release in the NAc and ethanol reward. We found that systemic administration of ethanol (0.5-4.0 g/kg) markedly enhanced DA release in the NAc while pretreatment with a peripheral-only D2 receptor (D2R) antagonist blocked these effects. A place conditioning paradigm was used to test rats for ethanol preference. Administration of a peripheral D2R antagonist before ethanol conditioning trials was found to prevent acquisition of ethanol conditioned place preference. Finally, ethanol suppression of locomotor activity in rats was attenuated by domperidone pre-administration. Domperidone pre-administration did not affect ethanol impairment of motor coordination. These findings suggest that ethanol enhancement of DA release, intoxication, and ethanol reward are all mediated, at least in part, by a peripheral mechanism involving D2Rs. These results challenge the dogma regarding direct ethanol actions on mesolimbic DA transmission and potentially provides novel pharmacological targets for the treatment of alcohol use disorder.

MacLachlan, Aileen; Berges, Bradford (Brigham Young University)
Faculty Advisor: Berges, Bradford (Life Sciences, Microbiology and Molecular Biology)

Staphylococcus Aureus (SA) is a well-known human pathogen causing infection in hospital settings world-wide. Given that SA is becoming increasingly resistant to antibiotics, the need to discover alternative treatments is urgent. One path that SA uses to combat antibiotics is by forming biofilms. Biofilms are microbial cell communities that form on surfaces and employ a complex extracellular polysaccharide matrix to protect the bacteria. In the past, bacteriophage (phage) has been investigated as a potential alternative to treat methicillin-resistant SA (MRSA) and break down its biofilm. Recently, students from Dr. Berges' laboratory isolated 6 novel strains of phage. In a recently published paper from Dr. Berges' lab, these phages demonstrated significant reduction of planktonic strains of SA and MRSA.

In this project, we further explore the ability of these 6 phages in breaking down biofilms from hospital associated SA strains. We plan to measure the reduction of SA biofilms caused by these novel phages against a control. The reduction results will be analyzed with previous research results to detect the presence of a polysaccharide degrading enzyme for the purpose of future research. In addition, we also plan on measuring the ability of the phage in preventing biofilm formation.

Jones, Dalton (Weber State University)
Faculty Advisor: Schramm, Katharina (Science, Botany)

Tomatoes (Solanum lycopersicum) are an important agricultural crop around the world. In order to produce food with less impact on the environment, many researchers are looking to utilize natural systems to maximize production with minimal inputs. Maximizing tomato defenses is one possible way to increase productivity. Tomatoes produce both physical and chemical defenses in response to the stress. Increasing the number of trichomes on the plant is a physical means of deterring insects from eating the plant. Trichomes come in two forms glandular trichomes and non-glandular trichomes. The non-glandular trichomes are strictly a physical defense while the glandular trichomes produce chemical defensive compounds against a wide variety of insects. Most land plants can form a symbiosis with arbuscular mycorrhizal fungi (AMF). This symbiosis has been shown to increase nutrient supply, decrease drought stress, and prime plant defenses, all increasing a plant's ability to withstand herbivory stress better. This study examines the response of trichomes and the number of chemical defenses after insect herbivory has occurred with the additional support of the AMF symbiosis. Treatments were exposed to Manduca sexta to stimulate trichome and chemical production. The extracted leaves were analyzed via gas chromatography to examine the make-up of the tomato's chemical defenses. The growth rates of M. sexta were recorded to examine the effects of tomato's chemical defenses after feeding the insects the induced tomato leaves. Measuring trichome density quantifies the change in physical defenses. The addition of the AMF increased the plant defenses, both the number of trichomes present on the plants and the quantity of the chemical defenses. Insects feeding on plants with increased defenses were also shown to have decreased growth. This study shows an alternative strategy for the use of commercial pesticides, lessening the impact of tomato crops on the ecosystem.

Bursell, Madeline; Dikow, Rebecca; Johnson, Warren; Koepfli, Klaus-Peter; Frandsen, Paul (Brigham Young University)
Faculty Advisor: Frandsen, Paul (Life Sciences, Plant and Wildlife Sciences)

Due to decreasing costs in genome sequencing, conservation genomics is a field that has experienced immense growth over the last few years. By comparing whole genome data within threatened and endangered populations, we can estimate important elements in conservation such as levels of homozygosity and demographic histories that reveal the level of endangerment of a species. This information informs conservation priorities and captive breeding programs. In the present study, we focus on two species of clouded leopards: Neofelis nebulosa and Neofelis diardi. N. nebulosa is a species of clouded leopard that lives in mainland southeast Asia. N.diardi inhabits the islands of Sumatra and Borneo in Indonesia. While these two species were initially thought to be a single species, evidence, such as differences in fur color and sizes of cloud markings, hint that they have diverged into two species. To shed more light on the genomic differences between them, we sequenced, assembled, and annotated whole genomes from both species. With genomes, we will explore differences in demographic histories, variation in blocks of homozygosity, and generate a whole genome phylogeny with other large cat species. Using these analyses, we share insights that will inform the conservation status of the two species.

Bonnie K. Baxter (Westminster College)
Faculty Advisor: Baxter, Bonnie (Westminster College, Biology)

Gypsum is a calcium sulfate mineral in a hydrated form. NASA's Mars Exploration Rover, Opportunity, found veins of gypsum deposited by water in 2011(Figure 7), and gypsum has been detected on Mars as early as 2005 by the ESA's Mars Express Orbiter. On Earth, gypsum is formed in hypersaline environments, in minerals left behind when water evaporates and it can trap microorganisms in fluid inclusions. Gypsum obtained from Great Salt Lake was used to develop a method to extract halophilic archaea and culture it in the lab. Our studies show that the mineral was difficult to dissolve in aqueous microbiological media. We tested various methods of dissolution involving mechanical crushing and tested solvents including microbiological media. We also employed a variety of cultivation methods. We will present data on best practices for obtaining halophilic microorganisms from gypsum samples. The method obtained could be used to isolate potential microorganisms present in gypsum samples from Mars.

Brunetti, Bryce; Escarate, Ashley; Conway, Matthew; Slezak, Cyrill; Kopp, Olga (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology); Slezak, Cyrill (Utah Valley University, Physics)

Purpose:
This study evaluates the effect of electrohydraulic shockwaves on Staphylococcus aureus biofilms. This system could be a great alternative to the use of antibiotics, and potentially life-saving technology that could save billions of dollars.

Background:
The rise of antibiotic-resistant bacteria is a global threat. Staphylococcus aureus is typically harmless, but this gram-positive species has become highly resistant and extremely pathogenic. Strains like MRSA and VRSA have the highest rate of drug resistance and are the leading cause of chronic bacterial infections via bacterial biofilms on medical devices. Biofilms are an aggregation of microbes that excrete an extracellular matrix providing an ideal environment for gene exchange and quorum sensing. Their complexity hinders the diffusion of antimicrobials. A proposed method to prevent device-associated infection is shockwave sterilization and therapy. A shockwave is a high-energy wave causing a sudden change in temperature, pressure and density in the medium. This study investigates the potential disruption of bacterial biofilms by electrohydraulic shockwaves.

Methods:
E. coli and S. aureus biofilms were grown on polystyrene plates. Biofilms were treated with shockwaves (0.19mJ/mm2, 300 pulses, 3 Hz) in a water bath and compared with those treated with Vancomycin. Cell viability was determined through XTT/menadione absorbance and specific biofilm formation through crystal violet absorbance.

Results:
Current testing has shown that electrohydraulic shockwaves have a bacteriostatic effect on biofilms. Other finding show potential for shockwaves to increase bacterial susceptibility to lower levels of antibiotics.

Conclusions:
Device-associated infections are a serious threat to patients' health. The diminishing effectiveness of antibiotics in treating and preventing infections along with evolution of mass resistance in bacteria have given rise to the term "post-antibiotic era." The better understanding of electrohydraulic shockwaves bacteriostatic effect could lead to more effective treatments for antibiotic resistant bacteria such as S. aureus.

Sirrine, Michael; Grose, Julianne (Brigham Young University)
Faculty Advisor: Grose, Julianne (Brigham Young University, Microbiology and Molecular Biology)

PAS kinase is a serine/threonine protein kinase known to regulate the pivotal switch between cellular respiration and lipid biosynthesis. One substrate of PAS kinase is Cbf1, a known transcription factor which regulates lipid biosynthesis in yeast and mammalian cells (human homolog USF1). USF1 is associated with hyperlipidemia and hypercholesterolemia in several GWAS studies. We have recently identified and characterized a role for Cbf1 in the regulation of respiration as well, making it a key player in partitioning cellular resources towards respiration versus lipid metabolism. The goal of this proposal is to use the powerful tools of yeast genetics to identify physical interactors of Cbf1 in order to characterize the molecular mechanisms of its action.

Lemmon, Skyler; Chaston, John (Brigham Young University)
Faculty Advisor: Chaston, John (Life Sciences, Plant and Wildlife Sciences)

Over the course of the last year, I have dedicated most of my time in the lab to learning about CRISPR/Cas9 and practicing the laboratory techniques that are necessary to make genetic changes in Drosophila melanogaster. Here I aim to expand on that expertise by applying CRISPR to study a genetic question: how the microbial composition of the D. melanogaster microbiome is affected by the modification of 4 specifically selected genes in flies from Florida and Maine. For each of the selected genes, the Florida fly allele will be put into the Maine fly genome and the Maine fly allele will be put into the Florida fly genome. The microbiome composition of these two new flies will be compared against the original lines in a factorial design. Embryos will be injected with the necessary plasmids for a double-stranded cut to take place. After injection, homology dependent repair that will incorporate the new allele. Sanger sequencing will be used to screen for successful knock-in of the allele. Finally, the concentrations of each type of bacteria found in the microbiota of the flies will be measured and compared against the flies from which the allele came from.

Hess, Kavan; Herring, Jacob; Yang, Haokun; Tessem, Jeff (Brigham Young University)
Faculty Advisor: Tessem, Jeff (Brigham Young University; Department of Nutrition, Dietetics, and Food Science)

Diabetes is the seventh leading cause of death in the United States, and often accompanies other life-threating complications. There are two main types of diabetes that are both characterized by disfunction or destruction of insulin producing beta cells found in the islets of Langerhans. Islets of Langerhans are composed of endocrine hormone secreting cells, including alpha cells (glucagon), beta cells (insulin) delta cells (somatostatin), epsilon cells (ghrelin) and PP cells (pancreatic polypeptide). While alpha and beta cells make up ~90% of all the cells in the islet, delta cells comprise only ~10% and are responsible for cross talk in the islet. Delta cells regulate intra-islet cross talk through the secretion of somatostatin-14. It has been shown that Nr4a1 and Nr4a3 overexpression induces beta cell proliferation, while Nr4a1 or Nr4a3 deletion inhibits insulin secretion when challenged with glucose. Delta cells contain three times the amount of Nr4a1 mRNA than beta cells. However, no research has been done on the role of either of these transcription factors in the cross talk between the different cell types of the islet. Here we aim to show how a lack of Nr4a1 and Nr4a3 affects delta cell somatostatin release when challenged with glucose.

Domyan, Eric; Godoy, Daniela; Gardiner, Kylan (Utah Valley University)
Faculty Advisor: Domyan, Eric (Science, Biology)

Pigmentation is one of the main traits we notice when we look at something, whether it be a flower, an animal, or another human. Variation in pigmentation arises when random mutations affect the function of a gene involved in pigmentation production. In this research our goal is to understand a specific mutation that happens in Pigeons which involves the TYRP1 gene.
The TYRP1 gene instructs the making of the tyrosinase-related protein. This enzyme is located in melanocytes, which are cells that produce melanin. Studies suggest that this enzyme may help stabilize tyrosinase, which is responsible for the first step in melanin production.
TYRP1 has a signal peptide which directs the protein to the ER (endoplasmic reticulum) where the signal peptide is removed before the mature protein is trafficked to melanosomes to perform its normal function. The Ash-red mutation, however, prevents removal of the signal peptide, which somehow results in pheomelanin synthesis (red) instead of eumelanin synthesis (dark blue). These findings suggest that the Ash-red mutation is causing the TYRP1 protein to perform a new function. The goal of this project is to better understand the synthesis and trafficking of TYRP1 throughout the cell organelles.
To study this, we plan to use transgenesis to express normal, or Ash-red versions of TYRP1 protein in melanocytes, label the different intracellular compartments using an immunostain, and determine whether normal or Ash-red TYRP1 proteins are being sent to the same, or different compartments of the cell.

Leavitt, Amanda; Harris, Heather; Szanter, Kathryn; Stokes, Alexis (Weber State University)
Faculty Advisor: Dunn, Charles (Weber State University, Child and Family Studies); Hubler, Daniel (Weber State University, Child and Family Studies); Osai, Keith (Weber State University, Child and Family Studies)

How a child is parented can influence their success socially, mentally, physically, and emotionally. Agarwal (2017) states that "Parenting plays the most important part in any child's life, it can help a child by teaching them to deal with people, situations and adapt to a better living standard" (p.1335). Parents help form worldviews, shape a child's attitude towards personal achievement, teach how to approach adversity in life, and satisfy their needs whether it be psychological and/or physiological. Much is known about how the base of one's childhood is built upon one's primary caregivers' parenting style, however, less is known about the intergenerational transmission of parenting philosophies.

The current study was designed to assess how parenting styles affect child delinquency and bullying. Through social media invitations and snowball sampling, 200 people accepted invitations to participate in an online survey incorporating both open-ended and quantitative items. Participants were asked to reflect on how they were parented and then state what they have maintained or changed in their own parenting styles. Considering the rich nature of the responses to the qualitative items, a corroborative narrative came together through personal stories.

Through thematic analysis, several themes emerged. When participants reported being parented with: open communication, flexibility, love, trust, and higher expectations they wanted to keep those traits. When asked what participants carried on from their parents one participant stated, "Cherish the family and the moments we have together." Additionally, 28% (n = 113) of our participants shared the importance of spending quality time together. However, when participants' parents did not display those traits, most participants indicated that similar traits, namely communication, flexibility, love, quality time, trust, and higher expectations were desired in their homes. The findings from the current study can be used to inform future parenting research assessing influence on subsequent generations.

Wilson, Seth; Taylor Adam; Bursell, Madeline; Frandsen, Paul; Stewart, Russell; Steeneck, Amy (Brigham Young University)
Faculty Advisor: Frandsen, Paul (Brigham Young University, Plant and Wildlife Sciences)

Caddisflies (Insecta: Trichoptera) have evolved to produce silk with adhesive and elastic properties in aqueous environments. The silk is used in several ways by different species within the order such as case making, retreat making and using the silk as an anchor in the stream. Previous research on caddisfly silk has focused on understanding the evolutionary changes in the H-fibroin gene, the main protein found in caddisfly silk, which underlies the structural transformation behind these phenotypic properties that allow for diverse usage of the silk across the order (Ashton et al. 2013). Understanding the genetic foundation of the silk is crucial to understanding the phenotypic interactions that determine the unique qualities of caddisfly silk. An accurate assembly of the caddisfly genome will allow us to resolve the H-fibroin gene that plays an integral role in the formation of the caddisfly silk. Next-generation sequencing, Oxford Nanopore, and PacBio will allow us to sequence long reads that can span repetitive regions of the genome. These regions have made it difficult to resolve the H-fibroin gene as there are many repetitive motifs found in the gene. We will combine this next-generation sequencing with second-generation sequencing, Illumina and Sanger Sequencing to optimize the assembly. In this study, we used a combination of next-generation sequencing technologies to assemble the complex H-Fibroin gene in order to look at the underlying genetic structure of the silk protein. We identified unique repetitive motifs in the gene that contribute to the silk's adhesive strength and elasticity when in aqueous environments.

Escarate, Ashley; Brunetti, Bryce; Conway, Matthew (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology); Slezak, Cyrill (Utah Valley University, Physics)

Medical device-associated infections can lead to serious complications affecting the health of patients. Electrohydraulic shockwave treatments have shown bactericidal activity in some microorganisms. Biofilms are structures formed by microorganisms enclosed in an extracellular matrix. They form on a variety of surfaces protecting the microorganisms from antibiotics and facilitating their growth. This can result in a high rate of drug resistance and in many cases result in chronic bacterial infections.
Previously determined MIC50 concentrations of vancomycin had little effect on biofilms at twelve hours of treatment when not paired with shockwave therapy. This research evaluates the synergistic effect of different concentrations of vancomycin and shockwaves after twelve and twenty four hours of treatment given that vancomycin has shown time-dependent activity. Biofilms were grown in 96 well plates and the corresponding treatments were applied. XTT and Crystal Violet assays were used to quantify and qualify the presence of the biofilm and the antibiosis effect. The results of this experiment will be discussed in detail. A better understanding of the synergistic effects of antibiotics and shockwave therapy may lead to a more effective treatment of biofilm and device-associated infections.