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Antibiotic Resistance in Staphylococcus aureus: Effects of Biofilm Synthesis in Gene Transfer

December 30, 0020 12:00 AM
Hirschi, Blake; Pickett, Brad; Thompson, Jared; Telford, Mady; Berges, Bradford (Brigham Young University)
Faculty Advisor: Berges, Brad (Life Sciences, Microbiology and Molecular Biology)

Staphylococcus aureus (S. aureus) is a commensal bacterium commonly found amongst livestock and near 30% of humans' nostrils. However, through acquisition of certain genes S. aureus may develop antibiotic resistance such as in methicillin-resistant Staphylococcus aureus (MRSA). One hypothesized component lending to acquisition of genetic resistance in S. aureus is the synthesis of colony biofilms. Biofilms are comprised of a variety of substances including secreted polysaccharides, protein and even extracellular DNA. Our work postulates that extracellular DNA-based biofilms will transfer genes for antibiotic resistance at a higher rate than in polysaccharide/protein biofilms. Through employment of polymerase chain reaction (PCR), we aim to characterize a wide sample of methicillin-susceptible S. aureus (MSSA) human associated strains and MRSA livestock associated strains for multiple antibiotic resistances. Co-inoculating pairs of human associated and livestock associated strains, each lacking the other's resistance genes, will provide an environment wherein biofilm-mediated gene transfer may occur. Further pairing based on biofilm composition (DNA or polysaccharide/protein) will yield data concerning which biofilm facilitates gene transfer more efficiently. Subsequent genotyping will confirm whether resulting isolates acquired new antibiotic resistance through biofilm-mediated transfer, thus increasing pathogenicity.

Basal diet, green tea extract and gut microbiome interactions in a mouse multi-generation study.

December 30, 0020 12:00 AM
Bartlett, Ashley; Phatak, Sumira; Hintze, Korry; Benninghoff, Abby (Utah State University)
Faculty Advisor: Benninghoff, Abby (College of Agriculture and Applied Sciences; Animal, Dairy, and Veterinary Sciences Department)

The gut microbiome modulates various physiological functions related to cancer development including inflammation, cell proliferation, apoptosis, and angiogenesis. Patients with inflammatory bowel disease have a microbiome distinct from healthy controls with consistent observations of reduced gut biomass, decreased diversity within the community, and altered relative abundance. Although a consensus cancer-related microbiome has not been identified, several pathogenic species play an instrumental role in the progression of colitis and tumorigenesis, including: Streptococcus bovis, Helicobacter pylori, Enterococcus faecalis, Clostridium septicum, and Escherichia coli. Gut microbial composition is highly responsive to diet and inadequate intake of micronutrients is a critical feature of the Western dietary pattern. Gut dysbiosis has been proposed to further limit mineral uptake and impair vitamin synthesis, predisposing the host to micronutrient deficiency. Dietary bioactives, such as those in green tea, may function as a mediator between the gut microbiome and basal diet to ultimately prevent colitis associated colorectal cancer (CAC). The overarching objective of our work is to determine the impact of ancestral or multi-generational consumption of the total Western diet (TWD) in a murine model of CAC. Our previous work is the first to investigate how diet induced transgenerational inheritance affects CAC outcome. Our data suggested that multigenerational patterns of exposure to the TWD altered both phenotype and gene expression in third generation offspring. Supplementation with green tea appeared to be most promising after consumption of TWD for multiple generations. Considering that gut microbes are inherited maternally after colonization during vaginal birth, the gut microbiome is a missing piece in this disease model puzzle. The hypothesis of our current project is to investigate whether intake of TWD influences the transmission of microbes and whether CAC outcome is reflected by altered gut microbial composition. Based on other work, we expect the healthy control to possess an abundance of varied bacterial taxa that maintain protective epithelial barrier function and overall homeostasis. On the other hand, a high fat diet would promote increased intestinal permeability, a substantial shift at the phyla level, and increased production of pro-inflammatory cytokines. After TWD consumption, we expect an overall negative phenotypic outcome within the gut microbiome, that includes a breakdown of the epithelial barrier and introduction of pathogenic bacteria. These harmful bacteria tend to thrive on simple sugars that are common in the Western dietary pattern and tend to produce metabolites known as endotoxins that promote dysbiosis.

Bioinformatic comparison of peptidases in Lactococcus lactis subsp. lactis and Lactococcus lactis subsp. cremoris

December 30, 0020 12:00 AM
Wood, Branzen; Oberg, Taylor; Culumber, Michele; Oberg, Craig (Weber State University)
Faculty Advisor: Oberg, Taylor (Utah State University, Nutrition and Food Science); Culumber, Michele (Weber State University, Microbiology); Oberg, Craig (Weber State University, Microbiology)

The unique flavorings and textures of Cheddar cheese are produced by the degradation of the major milk proteins. One of those proteins, casein, is degraded by the enzyme chymosin and a series of peptidases produced by the starter Lactococcus added to the milk. As casein is degraded, several small peptides accumulate. One of these peptides, ß-casein, can have an adverse bitter taste that is non-desirable and considered a defect in Cheddar cheese. The two main starter cultures used industrially in Cheddar cheese making are Lactococcus lactis subsp. lactis and L. lactis subsp. cremoris. L. lactis subsp. cremoris has been used traditionally in Cheddar cheese making, however, L. lactis subsp. lactis ferments more quickly and is becoming more popular in the cheese industry. With the transition creameries have seen a sharp rise in bitterness during production. Our hypothesis was that while closely related, cremoris synthesizes some peptidases that help with ß-casein degradation that lactis does not. Peptidases found in cremoris include PrtP I and II, Pep X, Pep C, Pep A, Pep T, Pep Q, Pep N, Pep V among others. We searched the genomes of both strains using RAST bioinformatic software, and the databases NCBI and UniProt. The peptidases common in cremoris were also found in lactis. We are now trying to determine if the location of the peptidases on the genomes change how they are regulated or produced. Further, we will begin looking into the genome for other, novel, enzymes that might have peptidase activity that influence bitterness.

Blue Streak on Uca Pugnax

December 30, 0020 12:00 AM
Anderson, Lars; Baldwin, Haley; Christensen, Ben; Walker, Austen (Brigham Young University)
Faculty Advisor: Griffen, Blaine (Brigham Young University, Life Sciences)

This research looks at the blue coloration on uca pugnax crab carapace above the mouth and between the eyestalks and associates the coloration to the behavior, sexual maturity, and size of the crab, as well as the detection of metals in their environment. Up to ten crabs were photographed within twenty five isolated sites with the objective of gathering a high range of color difference among the uca pugnax. The photos of the crabs were set to match the same scale of light and RGB as to not have interference from external factors such as sunlight or overcast weather. The shade of blue on the carapace provides information about the surrounding environment where the uca pugnax are found.

CD5 knockout mice display reduced ethanol consumption and resistance to ethanol induced sedation

December 30, 0020 12:00 AM
Baptista, Gabriela; Payne, Andrew; Obray, J Daniel; Yorgason, Jordan; Weber, K Scott; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences, Psychology)

Cluster of differentiation 5 (CD5) is expressed in both T and B cells. CD5 has been found to display an altered expression profile following chronic ethanol use and during ethanol withdrawal. Specifically, the number of CD5+ B cells is reduced during withdrawal while the number of T cells is increased. Given the apparent sensitivity of these cells to ethanol and recent research suggesting that some ethanol effects are accounted for by neuroimmune interactions we assessed drinking behavior and ethanol induced sedation in CD5 knockout (KO) mice. We found that CD5 KO mice display decreased ethanol consumption as compared with wild-type controls and that ethanol consumption does not increase with repeated exposure in CD5 KO mice. Additionally, CD5 KO mice displayed considerable resistance to the sedating effects of ethanol. Further studies are underway to assess whether there are baseline differences in dopamine dynamics within the mesolimbic pathway between CD5 KO mice and wild-type controls as well as to whether neurons in the mesolimbic pathway differ in their response to ethanol in CD5 KO mice.

Cell Adhesion and Morphology in Relation to Neural Tube Defects

December 30, 0020 12:00 AM
Lin, Jade; Park, Yeram; Ross, Micah; Stark, Michael; Hansen, Marc (Brigham Young University)
Faculty Advisor: Stark, Michael (Brigham Young University, Physiology and Developmental Biology); Hansen, Marc (Brigham Young University, Physiology and Developmental Biology)

Neural Tube Defects (NTDs) such as spina bifida and anencephaly are due to incomplete closure of neural tubes in developing embryos. While the etiology is still unknown, environmental and genetic factors, toxicants, and maternal health are implicated as potential causes. Previous research shows that NTDs are associated with increased levels of ceramide (C2) and possible exposure to fumonisin (FB1), and valproic acid (VPA). We hypothesize that these molecules may interfere with cell-to-cell interactions which are important for neural tube formation. To investigate the potential mechanisms by which these toxicants can induce NTDs, I will use a well-characterized MDCK cell model treated with C2, FB1, and VPA to assess their impact on cell adhesion.

Childhood experiences and adult health: The moderating effects of temperament

December 30, 0020 12:00 AM
Miller, Jacob; Cheung, Aaron; Novilla, Kirsten; Crandall, Aliceann (Brigham Young University)
Faculty Advisor: Crandall, Aliceann (Life Sciences, Public Health)

Existing literature demonstrates a strong relationship between childhood experiences and adult health outcomes. The Differential Susceptibility to Environment Theory suggests that there are several factors, including personality and physiology, that effect a child's sensitivity to adverse and advantageous experiences. A sample of 246 adults (ages 19-57) were asked questions about extroverted personality characteristics, adverse and advantageous childhood experiences, and several measures of adult health, including executive functioning, perceived stress levels, depression, and past smoking habits. The sample was then stratified based on level of extroversion scores with the top quartile being labeled as "extroverts", the bottom quartile as "introverts", and those in between as "ambiverts". Regression analyses were then used to assess the relationship between childhood experiences and each adult health outcome. The results of the study showed that the extroverted individuals experienced more positive health outcomes after more advantageous childhood experiences, as well as decreases in adult health outcomes after more adverse childhood experiences. These results suggest that extroverts more than introverts are more sensitivity to environmental influences in childhood. More research is needed to understand the neurobiological mechanisms that increase environmental sensitivity among extroverts.

CRISPR-based identification of Salmonella in local waterways

December 30, 0020 12:00 AM
Hirschi-Forster, Jeanallie; Mendoza, Matthew; Van Oene; Nicholas ; Payton, Jullian (Weber State University)
Faculty Advisor: Clark, Daniel (Science, Microbiology)

The purpose of this research is to obtain quantitative data about possible sources for Salmonella contamination including tributaries to the Great Salt Lake, namely, the Jordan River, Weber River, and Bear River in Utah. We will also analyze specific water and soil sources near poultry farms for possible contamination. In recent studies, there is a greater number of produce items that have been found to contribute to Salmonella outbreaks. Contaminated water used for irrigation of these crops has been implicated as the causative agent for food contamination.

Bacteria found in these waterways are enriched using selective and differential media. This means, the media provides Salmonella species with required nutrients to grow effectively while differential media inhibits the growth of non-Salmonella species. The enrichment media that is used during this process is 3 X Tryptic Soy Broth and Gram-Negative broth. Gram negative broth is used as an enrichment step, but also selective in that it inhibits growth of other organisms. The two types of differential media would be XLT4 and MSRV. Salmonella is a motile bacterium and thus branches out from its original location of inoculation. This creates a halo-like growth pattern that makes it possible to differentiate Salmonella on MSRV plates. Once Salmonella is confirmed through the MSRV and XLT4 media, sequencing of its two CRISPR loci is completed. These two chromosomal regions have been shown to be distinct in different serovars, and as such, they can be used to distinct what subspecies is present in the sample.

Does phylogenetic relatedness influence response to heterospecific alarm cues in Brachyrhaphis rhabdophora?

December 30, 0020 12:00 AM
Chou, Audrey; Duffy, Alexandra; Johnson, Jerald (Brigham Young University)
Faculty Advisor: Johnson, Jerald (Brigham Young University, Biology)

Upon injury, fish release chemicals that cause fear and a dramatic change in behavior in nearby members of the species. Chemical alarm cues are released from injured epidermal tissue and provide an early warning signal for individuals to detect the presence of an active predator, and potentially increase the chances of individual survival. This research project investigates the conservation of alarm cue recognition and response across species boundaries by measuring the behavioral response of Brachyrhaphis rhabdophora to the alarm cues from five different species. Since these species will be of known phylogenetic relatedness, we will determine conservation of alarm cue response as a function of phylogenetic distance. I will also discuss the method of quantifying behavioral response through the use of a two-choice flume tank to measure both changes in activity and spatial avoidance upon alarm cue exposure.

Effects of Parenting Styles on Child Delinquency and Bullying

December 30, 0020 12:00 AM
Leavitt, Amanda; Harris, Heather; Szanter, Kathryn; Stokes, Alexis (Weber State University)
Faculty Advisor: Dunn, Charles (Weber State University, Child and Family Studies); Hubler, Daniel (Weber State University, Child and Family Studies); Osai, Keith (Weber State University, Child and Family Studies)

How a child is parented can influence their success socially, mentally, physically, and emotionally. Agarwal (2017) states that "Parenting plays the most important part in any child's life, it can help a child by teaching them to deal with people, situations and adapt to a better living standard" (p.1335). Parents help form worldviews, shape a child's attitude towards personal achievement, teach how to approach adversity in life, and satisfy their needs whether it be psychological and/or physiological. Much is known about how the base of one's childhood is built upon one's primary caregivers' parenting style, however, less is known about the intergenerational transmission of parenting philosophies.

The current study was designed to assess how parenting styles affect child delinquency and bullying. Through social media invitations and snowball sampling, 200 people accepted invitations to participate in an online survey incorporating both open-ended and quantitative items. Participants were asked to reflect on how they were parented and then state what they have maintained or changed in their own parenting styles. Considering the rich nature of the responses to the qualitative items, a corroborative narrative came together through personal stories.

Through thematic analysis, several themes emerged. When participants reported being parented with: open communication, flexibility, love, trust, and higher expectations they wanted to keep those traits. When asked what participants carried on from their parents one participant stated, "Cherish the family and the moments we have together." Additionally, 28% (n = 113) of our participants shared the importance of spending quality time together. However, when participants' parents did not display those traits, most participants indicated that similar traits, namely communication, flexibility, love, quality time, trust, and higher expectations were desired in their homes. The findings from the current study can be used to inform future parenting research assessing influence on subsequent generations.

Ethanol enhancement of dopamine release in the nucleus accumbens and ethanol reward is mediated by peripheral dopamine 2 receptors

December 30, 0020 12:00 AM
Diaz, Paula; Baptista, Gabriella; Obray, J Daniel; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

The prevailing view is that enhancement of dopamine (DA) transmission in the mesolimbic DA system underlies the rewarding properties of alcohol. The aim of the present study was to help reconcile the relative insensitivity of DA neurons to ethanol in vitro (EC50 = 96 mM) with the sensitivity of DA neurons in vivo (EC50 = 3 mM). To do this we investigated the role of peripheral dopamine 2 receptor (D2R) mediated neuroimmune responses in ethanol enhancement of DA release in the NAc and ethanol reward. We found that systemic administration of ethanol (0.5-4.0 g/kg) markedly enhanced DA release in the NAc while pretreatment with a peripheral-only D2 receptor (D2R) antagonist blocked these effects. A place conditioning paradigm was used to test rats for ethanol preference. Administration of a peripheral D2R antagonist before ethanol conditioning trials was found to prevent acquisition of ethanol conditioned place preference. Finally, ethanol suppression of locomotor activity in rats was attenuated by domperidone pre-administration. Domperidone pre-administration did not affect ethanol impairment of motor coordination. These findings suggest that ethanol enhancement of DA release, intoxication, and ethanol reward are all mediated, at least in part, by a peripheral mechanism involving D2Rs. These results challenge the dogma regarding direct ethanol actions on mesolimbic DA transmission and potentially provides novel pharmacological targets for the treatment of alcohol use disorder.

Exploring the Synergies Between Vancomycin and Electrohydraulic Shockwave in Treating Staphylococcus Aureus Biofilms

December 30, 0020 12:00 AM
Escarate, Ashley; Brunetti, Bryce; Conway, Matthew (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology); Slezak, Cyrill (Utah Valley University, Physics)

Medical device-associated infections can lead to serious complications affecting the health of patients. Electrohydraulic shockwave treatments have shown bactericidal activity in some microorganisms. Biofilms are structures formed by microorganisms enclosed in an extracellular matrix. They form on a variety of surfaces protecting the microorganisms from antibiotics and facilitating their growth. This can result in a high rate of drug resistance and in many cases result in chronic bacterial infections.
Previously determined MIC50 concentrations of vancomycin had little effect on biofilms at twelve hours of treatment when not paired with shockwave therapy. This research evaluates the synergistic effect of different concentrations of vancomycin and shockwaves after twelve and twenty four hours of treatment given that vancomycin has shown time-dependent activity. Biofilms were grown in 96 well plates and the corresponding treatments were applied. XTT and Crystal Violet assays were used to quantify and qualify the presence of the biofilm and the antibiosis effect. The results of this experiment will be discussed in detail. A better understanding of the synergistic effects of antibiotics and shockwave therapy may lead to a more effective treatment of biofilm and device-associated infections.

Genomic Analysis Between Trichoptera and Lepidoptera Show Evolutionary Innovations Allowing Trichoptera to Adapt to an Aquatic Environment

December 30, 0020 12:00 AM
Olsen, Lindsey; Frandsen, Paul (Brigham Young University)
Faculty Advisor: Frandsen, Paul (Life Science, Plant and Wildlife)

Trichoptera (caddisflies) have evolved to become the most diverse, exclusively aquatic insects, yet many of the genomic changes that contribute to Trichoptera's the success of this order of insects are still unknown. Trichoptera and Lepidoptera (moths and butterflies) are reciprocally monophyletic meaning that they both share their most recent common ancestor. Despite being closely related, Trichoptera have evolved into the most diverse, exclusively aquatic insects, whereas, Lepidoptera have evolved to become a diverse, almost exclusively terrestrial insect (Holzenthal et al. 2007). Trichoptera and Lepidoptera are the subjects of scientific inquiry because they are both capable of spinning silk. Trichoptera produce silk as larvae and use it to make cases or fixed retreats. Trichoptera silk is of particular interest because its properties allow for it to be an underwater adhesive. While other research has focused primarily on the evolution of Trichoptera silk, little research has been done to identify the evolutionary innovations that allowed Trichoptera to adapt and diversify in an aquatic environment. Our research focuses on identifying the genomic basis of their evolutionary innovations. We report the genome annotation of four newly sequenced Trichoptera species Hesperophylax magnus, Parapsyche elsis, Philanisus plebeius, and Rhyacophila brunnea. These annotations will reveal levels of homozygosity, conserved elements, and gene duplications. We then conducted a genome-wide search for gene family expansions and retractions using CAFE, in order to identify genomic regions that could contribute to Trichoptera's unique qualities and evolutionary history.

Holzenthal R. W., R. J. Blahnik, A. L. Prather, and K. M. Kjer, 2007 Order Trichoptera Kirby, 1813 (Insecta), Caddisflies*. Zootaxa 1668: 639—698. https://doi.org/10.11646/zootaxa.1668.1.29

High-Fat Diet Induces Nr4a3-Dependent Decrease in Respiratory Capacity of Mouse Soleus Muscle

December 30, 0020 12:00 AM
Marchant, Nathan; Marchant Erik; Elison, Weston; Herring, Jacob; Yang, Haokun; Tessem, Jeffrey; Hancock, Chad (Brigham Young University)
Faculty Advisor: Hancock, Chad (Brigham Young University; Nutrition, Dietetics, and Food Science); Tessem, Jeffrey (Brigham Young University; Nutrition, Dietetics, and Food Science)

Purpose: To analyze the effect of the Nr4a3 gene on respiratory capacity of mitochondria in skeletal muscle of mice on a normal or high fat diet.

Methods: Nr4a3-/- and WT mice were fed a normal chow (NC) or high fat diet (HF) for at least 20 weeks. After euthanasia, soleus muscle was harvested and wet weight was measured and prepared for respirometry. Mitochondrial respiration was evaluated using an Oroboros Oxygraph Respirometer. Respiratory capacity comparisons were made with a two-way ANOVA and Tukey multiple comparison test.

Results: Oxygen consumption is reported as pmol/(s*mg wet tissue) and statistics are represented as mean ± SEM. In the WT male mice there was a decrease in coupled complex I supported respiration in HF vs. NC diet (25.9 ± 7.3 vs. 64.5 ± 5.0, p=0.004). In the HF WT group there was also a decrease in uncoupled respiration (61.4 ± 15.0 vs. 107.8 ± 7.1, p=0.0004) compared to NC WT. In female mice there was also a decrease between HF WT and NC WT in complex I (28.2 ± 3.7 vs. 57.4 ± 5.7, p=0.0005) and uncoupled respiration (87.1 ± 7.1 vs. 119.4 ± 8.9, p=0.0001). However, there was no significant difference between the WT NC mice and either of the Nr4a3-/- groups. Coupled complex I and uncoupled respiration states in both Nr4a3-/- groups were not significantly different from WT.

Conclusion: Feeding mice a high fat diet impairs proper mitochondrial function in muscle when compared to a normal chow diet. The decrease in respiration from the HF diet is dependent upon the function of the Nr4a3 gene, as no decrease was observed in Nr4a3-/- mice.

Identifying Conservation Needs of Dwarf Bear-Claw Poppy Populations

December 30, 0020 12:00 AM
Thatcher, Spencer; Eyere, Gloria (Dixie State University)
Faculty Advisor: O'Brien, Erin (College of Science, Engineering, and Sciences; Biological Sciences Department)

Dwarf bear-claw poppies (Arctomecon humilis Coville) are an endemic species of wildflower in Washington county Utah. These poppies only flower for about a month during the summer. There are currently seven known locations where these poppies are found. Conservation efforts to protect these populations includes research to understand the reproductive success of each site. Populations with low reproductive success may indicate the need for additional efforts or interventions to save this unique species. Four specific locations were monitored over a three-year period. Poppies in these areas were tagged and studied during their flowering seasons and individual inflorescences were bagged and collected to determine struggling locations and their correlating issues related to population decline. Seeds were split into two groups: immature and mature and were weighed and counted. A large percentage of immature seeds may indicate a resource or pollinator issue for the population. A low overall seed production may indicate that a resource limitation or other stressor is reducing the population viability.

Interleukin 10 increases dopamine neuron activity in the ventral tegmental area and increases dopamine release in the nucleus accumbens via reduction of GABA inhibition

December 30, 0020 12:00 AM
Clarke, Eliza; Williams, Stephanie; Payne, Andrew; Obray, J Daniel; Yorgason, Jordan; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

Dopamine (DA) transmission is a key player in the rewarding aspects of ethanol as well as ethanol dependence. The current dogma is that DA transmission is increased during ethanol exposure via the inhibition of ventral tegmental area (VTA) GABA neurons and that excitation of VTA GABA neurons during withdrawal results in decreased DA transmission. Microglia, the major neuroimmune effector in the brain, may be a key mediator in this process by releasing cytokines following activation. It is also thought that BDNF may mediate this effect. We evaluated the effect of ethanol on cytokine concentrations in the VTA and nucleus accumbens (NAc), and found that low dose ethanol (1.0 g/kg) decreased interleukin (IL)-10 levels, but high dose ethanol (4.0 g/kg) increased IL-10 levels. We also used standard cell-attached mode electrophysiological techniques to evaluate the effects of select cytokines and BDNF on VTA neuron firing rate in vitro. We found no change in firing rate in response to IL-6 and BDNF, but an increase in firing rate in VTA DA neurons in response to IL-10. Consistent with the changes in firing rate, optically-evoked IPSCs were also found to be decreased in response to IL-10. Ex vivo voltammetry and in vivo microdialysis were done to determine whether IL-10 can directly result in an increase in DA release. Although ex vivo voltammetry showed no change in DA release, IL-10 increased DA release in vivo. These findings suggest that the rewarding and/or addictive effects of ethanol may be mediated by cytokines, specifically the anti-inflammatory cytokine IL-10.

Lichens as bioindicators for air quality in the Intermountain West - creating a model for large-scale monitoring

December 30, 0020 12:00 AM
Smith, Hayden; Leavitt, Steve (Brigham Young University)
Faculty Advisor: Leavitt, Steve (College of Life Sciences, Biology)

Brigham Young University's Lichen Air Quality Biomonitoring Program (Herbarium of Non-Vascular Cryptogams) represents one of the largest and longest-running lichen biomonitoring programs worldwide, with nearly 500 permanent reference plots distributed across the Intermountain West. At each reference site, sensitive indicator lichens are selected for elemental analyses of 25 potential pollutants, with the aim of subsequent resampling every five to 15 years for ongoing evaluations of ecological health. Using elemental analysis (EA) data from the past 30 years, a model for large-scale monitoring has been developed with the aim to (i) improve interpretation of air quality using lichen bioindicators, (ii) establish a framework to integrate future EA samples for comparison to historical data, and (iii) develop a platform in the future to more effectively share these data with land management agencies, research groups, and the broader public. The model will be field-tested with new EA samples collected along the Wasatch Front.

Micropropagation of Lepidium ostleri, an edaphic endemic plant species

December 30, 0020 12:00 AM
DeNittis, Alyson; Larson, Joseph; Perez, June; Kopp, Olga R. (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology)

Lepidium ostleri (Ostler's peppergrass) is an edaphic endemic plant species restricted to Ordovician limestone outcrops of the San Francisco Mountains in western Utah. L. ostleri is a species of conservation concern due to its restricted range and proximity to modern mining operations. The purpose of this research is to develop a micropropagation protocol to produce mature plants for population augmentation and introduction to support conservation efforts. De novo shoot organogenic response in tissue explants was highest with various concentrations and combinations of 6-Benzylaminopurine (BAP) and indole-3-acetic acid (IAA). In vitro and ex vitro rooting experiments were conducted on micropropagated plantlets supporting adequate number of shoots, with highest success in pulse treatments of indole-3 butyric acid (IBA). Plantlets were then acclimated to external environments for further propagation. Additional effects of different plant growth regulators, media, and growth conditions will be described. Methods for organogenesis for L. ostleri has not been published and this represents the first known instance of successful micropropagation of this rare plant species. Establishing a micropropagation protocol for L. ostleri provides valuable information for potential restoration or relocation efforts.

On the Relationship of Diabetes and Sleep Apnea: Evolution and Epigenetics

December 30, 0020 12:00 AM
Wilson, Nancy; Johnson, Steven (Brigham Young University)
Faculty Advisor: Johnson, Steven (Life Sciences, Microbiology & Molecular Biology)

Diabetes is the seventh leading cause of death in the United States today. Between sixty and ninety percent of diabetics also have sleep apnea. Although both sleep apnea and diabetes engender weight gain, the comorbidity of the two conditions is higher than can be explained by obesity alone.
In this study we explore the advantages of and evidence for the coevolution of diabetes and sleep apnea.
There is a metabolic shift that takes place when the cells of the heart need repair. Normally, hypoxic events cause a shift in heart-cell metabolism toward a high-glucose energy use. This shift mechanism is still fully functional in a diabetic heart cell, but because the underlying diabetes shifts the cellular metabolism to a primarily fatty-acid-based energy use, even a normally functioning hypoxia-induced cascade does not lead to full glucose metabolism or normal cellular repair.
So sleep apnea might serve a useful function in instigating heart tissue repair in cells. This suggests that sleep apnea and diabetes are not just frequently found together, but one condition may be causing the other.
After discussing some of the possible evolutionary drivers for co-adaptation of sleep apnea and diabetes, we examine some of the epigenetic marks associated with the two conditions, laying the groundwork for a better understanding of the underlying etiology.

Protein Pens: A New Diagnostic Instrument

December 30, 0020 12:00 AM
Armitstead, Annie; Grether, Lara; Creech, Kealani (Brigham Young University)
Faculty Advisor: Watt, Richard (Brigham Young University, Biochemistry)

Lateral Flow Immunoassays (LFI) are simple tests that detect specific levels of antigens or antibodies in patient samples. Requiring only a few minutes, small sample sizes and no read-out equipment, LFI�s are an invaluable and time efficient testing technique. Made up of multiple layers they facilitate the capillary flow of a sample through protein detection zones and can be developed to detect virtually any disease or condition.

Despite the attractive attributes of these tests, the assembly of an LFI strip requires expensive machines, trained personnel, and materials not easily accessible to low-resourced labs or clinics. Developing an innovative point-of-care platform designed to be streamlined, low-cost, and intelligible to the unskilled would open the door of medicine to even the most underprivileged clinics in the world.

We are currently developing a paper LFI that uses a single sheet of copy paper with the ability to filter whole blood as well as replacing high-priced machines with stencils and pens which can still deliver detection proteins to the designated test zones. This avenue of testing is supported by previous experiments we have done with protein pens and tagged antibodies. Using anti-mouse and anti-hCG antibodies as our control and test lines respectively, we spike our sample with hCG mouse antibodies tagged with nanoparticles, and we are able to see binding of both proteins with their respective antibodies. We have seen results in our new testing technique that is easily comparable with currently commercialized LFI's: visual results of binding within 1 min, successful transformation of printer paper into a functional binding platform, and consistent protein binding at a 1/10^5 concentration. Once this concept can be translated to different inks in order to diagnose a plethora of varying conditions, we'll be able to detect diseases and other important biomarkers no matter the limiting low-resource circumstances.

Prophylactic Treatment of Post-Traumatic Stress Disorder with Mifepristone and Propranolol

December 30, 0020 12:00 AM
Boyce, Zach; Smith, Calvin; Martin, Ashlyn; Ketch, Yuko; Dugan, James; Wright, Cole (Brigham Young University)
Faculty Advisor: Jeffrey, Edwards (Brigham Young University, Physiology and Developmental Biology)

Post-traumatic stress disorder (PTSD) is a complex psychological disorder that affects about 1 of 4 individuals after a stressful/traumatic experience. One common model to induce PTSD in rats is social defeat (SD) combined with chronic light exposure. First, we screened rats for natural anxiety to use in the SD protocol. Next, elevated plus maze (EPM) and light-dark transition (LDT) tests were used to detect anxious behavior after SD. The SD protocol induced significant anxious behavior when compared to controls. Next, we performed long-term potentiation (LTP) field electrophysiology synaptic plasticity physiology experiments in brain slices of the ventral hippocampus (VH) and basolateral amygdala (BLA), regions known to have altered enhanced plasticity in PTSD. SD significantly increased LTP in the VH (~25% greater than control) and BLA (~35% greater than control). To determine whether a prophylactic treatment could prevent the physiological changes of PTSD, we simultaneously administered two drugs at 10 mg/kg doses by intraperitoneal injection one week prior to and for the duration of SD. The first, propranolol, is a beta-adrenergic receptor antagonist, and the second, mifepristone, is a glucocorticoid receptor antagonist; thus, treatment would target the action of stress hormones altered in PTSD. To determine whether a prophylactic treatment could prevent the physiological changes of PTSD, propranolol and mifepristone, antagonists of two stress receptors, were simultaneously administered at 10 mg/kg doses by intraperitoneal (IP) injection one week prior to and for the duration of SThese drugs significantly decreased LTP in the VH and BLA back to near-control levels while SD rats with vehicle injections still had elevated LTP. However, SD drug-treated rats did not show significant reductions in anxious behavior compared to non-injected SD rats and also exhibited significantly more anxious behavior than control rats, suggesting the IP injection induced added stress. Next, we used rtPCR to examine gene expression of drug targets and plasticity markers to determine potential mechanisms for observed LTP changes. In both the VH and BLA, SD was associated with a significant decrease in glucocorticoid and mineralocorticoid receptor expression, which was restored to control levels under drug treatment. Overall, our data suggest that propranolol and mifepristone together may be a potential prophylactic treatment for preventing PTSD through a mechanism likely mediated by glucocorticoid/mineralocorticoid receptors.

Quantification of GAD 65/67 Proteins in Learning and Addiction Pathways

December 30, 0020 12:00 AM
Edwards, Jeffrey; Friend, Lindsey; Weed, Jared; Sandova, Philipl; Nufer, Teresa; Ostlund, Isaac Ostlund (Brigham Young University)
Faculty Advisor: Edwards, Jeffrey (Life Sciences, Physiology and Developmental Biology)

Substance abuse is a widespread problem in the United States. Although there are some existing treatments for addiction, the neural mechanisms of addiction are not deeply understood. This study quantifies the expression of GAD65 and GAD67 in GABAergic cells in the VTA of adolescent mice to shed light on the subtypes of cells involved in learning and addiction pathways.

The ventral tegmental area (VTA) of the brain, a critical part of the dopamine reward system, has many dopamine cells that are inhibited by nearby GABAergic neurons. Formation of memories and addiction involve long-term potentiation (LTP) and long-term depression (LTD) of these inhibitory GABA cells. We studied potential pathways of learning and addiction by measuring levels of expression of GAD 65/67 proteins and quantifying the cells that express one or both of these proteins.

Our results will provide insight about which GABAergic neurons are involved in the addiction pathway, furthering our understanding of the cellular mechanism of addiction. This will pave the way for more educated, effective treatment of drug addicts in clinical settings.

Role of CD5 in oral inflammation and periodontal disease

December 30, 0020 12:00 AM
Townsend, Jessica; Freitas, Claudia; Weber, Scott; Cardon, Dallin (Brigham Young University)
Faculty Advisor: Weber, Scott (Brigham Young University / Life Sciences, Microbiology and Molecular Biology)

The World Health Organization reported in 2016 that oral diseases affected half of the world's population. Oral diseases are due to poor oral hygiene and tobacco use which can develop into periodontal disease. Periodontal disease is caused by an immune response to microbial challenge, which initiates an invasion of lymphocytes and other single-nucleated cells to the site of inflammation in the mouth that can cause tooth loss and is a risk factor for heart and lung disease. Patients with severe periodontitis have increased auto-reactive B lymphocytes that express the CD5 co-receptor and these cells are influenced by T cells. We propose to investigate the relationship between oral inflammation, CD5, and the T helper immune response. This will be done by comparing oral inflammation in mice with and without CD5. CD5 is a T cell co-receptor that regulates T cell development and function and we hypothesize CD5 plays an important role in periodontal disease. We will test this hypothesis by co-culturing T cells expressing or lacking CD5 with oral mucosal or gingival epithelial cells that have been exposed to LPS (lipopolysaccharide, a major component of gram-negative bacteria's wall) and will exam differences in cell number, T cell subtype, and cell function.

Role of novel receptor GPR171 in chemotherapy-induced neuropathic pain

December 30, 0020 12:00 AM
Edwards, Taylor; Ram, Akila; McCarty, Ashley; Bobeck, Erin N (Utah State University)
Faculty Advisor: Bobeck, Erin (College of Science, Biology Department)

First-line chemotherapies against solid tumors are highly efficacious in reducing the tumor burden, but have many adverse side-effects including nerve damage, leading to chronic pain. Non-addictive, efficacious pain relievers are an area of active interest, and we propose a novel target to address this pressing issue. GPR171 is a G-Protein Coupled Receptor that was recently deorphanized and was identified to be expressed in the brain in regions that regulate reward, anxiety, and pain. Within the pain circuit, it was shown previously that systemic administration of the GPR171 agonist enhances morphine antinociception in acute pain tests. Preliminary data from our lab has shown that GPR171 activation can also alleviate persistent inflammatory pain. However, the role of this receptor has not been investigated in other chronic pain models. Given these findings in acute and inflammatory pain, we hypothesize that GPR171 can reduce neuropathic pain. To test this hypothesis, we investigate the role of GPR171 in chronic neuropathic pain. We tested the efficacy of a GPR171 agonist in a chemotherapy-induced neuropathy mouse model. Neuropathic pain was induced by injecting paclitaxel (16 mg/kg) followed by assessment of the pain-relieving effects of activating GPR171 receptors. Mechanical pain thresholds were assessed using Von Frey filaments. We observed an increase in mechanical thresholds following GPR171 agonist treatment. Further, using immunofluorescence we observed that there is a decrease in GPR171 receptors in the periaqueductal gray (PAG) of these mice that have neuropathic pain, indicating that the agonist can bind to the available receptors to produce pain relief. Overall, this study proposes that GPR171 may be a novel target for the treatment of neuropathic pain.

Sexual dimorphism and sexual selection in Alfaro cultratus and the effects of predation on these attributes

December 30, 0020 12:00 AM
Bonnett, Kelsie; Golden, Kaitlyn; Johnson, Jerry (Brigham Young University)
Faculty Advisor: Johnson, Jerald (Brigham Young University, Biology)

Understanding life-history strategies allows us to know how a changing environment affects species and communities. Livebearing Poeciliid fish are commonly used as models to gain a better understanding of these strategies, but some species like Alfaro cultratus have been neglected in this process. A. cultratus is a freshwater fish with a unique keel-shaped anal fin commonly found along the eastern coast of Central America. To understand the life-history strategies of this species and use it as a future model, I am performing an experiment to: 1) determine if there is sexual selection in Alfaro cultratus considering both body size and anal fin length; 2) determine whether A. cultratus displays sexual selection; and 3) understand how predation influences both dimorphism and selection. To do this I will be performing a two-part experiment in which I will first analyze previously collected samples for morphological differences, and second perform a live experiment to test Alfaro female preference. By doing so I will be able to not only advance our understanding of A. cultratus, but of life-history theory and conservation strategies.

Stress Sensitivity to Temperature in Plateau Side-blotched Lizards (Uta stansburiana uniformis): Implications for Immune Function

December 30, 0020 12:00 AM
Lidgard, Audrey; French, Susannah; Hudson, Spencer (Utah State University)
Faculty Advisor: Lidgard, Susannah (College of Science, Biology Department)

Ectothermic organisms, such as reptiles, rely on the external environment for regulating internal temperatures necessary for vital physiological processes. When faced with environmental challenges, temperature may differentially affect how allostatic mediators (e.g., glucocorticoid hormones) are released to mediate energy allocation for handling stressors. Subsequent differences in energy mobilization and circulating metabolites during a stress response may ultimately influence self-maintenance processes such as immunity. The aims of this research were to determine how stress sensitivity varies with diurnal temperatures in the Plateau Side-blotched Lizard (Uta stansburiana uniformis) and to assess the potential implications for immune function. Both baseline and stress-induced levels of glucocorticoids (corticosterone) and energy metabolites (glucose) were compared to body temperature and the thermal environment. Variation in innate immune function (bactericidal ability) was then compared to both temperature and physiological parameters at baseline and stress-induced levels. Stress reactivity via glucocorticoid release positively corresponded with body and environmental temperatures, although glucose release did not. Bactericidal ability subsequent to a stressor negatively corresponded with body temperature and glucocorticoid release. Such findings provide further insight on how stress sensitivity and self-maintenance can vary across the thermal environment, posing potential fitness consequences for an ectothermic organism.

Supplemental treatment options for diabetes: how DHE induces Nr4a1 expression and subsequent β-cell function

December 30, 0020 12:00 AM
Brown, Nathan; Herring, Jacob; Tessem, Jeffery (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Brigham young University; Nutrition, Dietetics, and Food Science)

Diabetes is a global epidemic affecting millions of people. The total estimated cost of diabetes in the U.S. during 2017 was 327 billion dollars. Diabetes is characterized by the loss of pancreatic β-cell function which is caused by an autoimmune disorder in Type 1 diabetes or insulin resistance and β-cell exhaustion in Type 2 (T2D) diabetes.
It is shown that β-cell mitochondrial respiration is dependent on the nuclear receptor Nr4a1. Respiration rates of cells lacking Nr4a1 in the presence of 16 mM glucose resulted in a significant decrease in glucose-stimulated insulin secretion by impeding the production of ATP. It was also found that knockdown of Nr4a1 results in decreased expression of mitochondrial dehydrogenase subunits Idh3g and Sdhb. Thus, the orphan nuclear receptor Nr4a1 is critical for β-cell mitochondrial function and insulin secretion.
In subsequent studies it was shown that dihydroergotamine (DHE) induces Nr4a1 expression via recruitment of the super elongation complex to enable elongation of Nr4a1 promoter paused RNA polymerase II. While these experiments have been shown in cancer cells, I hypothesize that DHE will up-regulate Nr4a1 and other downstream targets. To test this I will use an in-vitro model to culture INS-1 832/3 rat insulinoma cell lines as a useful model for insulin secretion regulation and pancreatic islet beta-cell function studies. This study will shed further light on the regulation of the Nr4a1 nuclear receptor in pancreatic β-cells.

Taller seedlings in about half the time: the effect of coyote ingestion on netleaf hackberry (Celtis reticulata) seeds

December 30, 0020 12:00 AM
Hannah A. Veltkamp, Sydney Houghton, Michael T. Stevens (Utah Valley University)
Faculty Advisor: Stevens, Micheal (Utah Valley University, Biology)

Netleaf hackberry (Celtis reticulata) is a deciduous shrub native to the southwestern United States and northern Mexico. Individual shrubs can be long-lived, but newly established stands of hackberry are rare. The lack of juvenile hackberry in the wild could be due to low germination rates reported in both laboratory and field settings. The seeds of hackberry are embedded in drupes that are an important source of food for birds and small mammals. Animals likely play an important role in seed dispersal, and passing through a digestive tract could increase the germination rates of hackberry seeds. Passage through the digestive tract of a mammal can increase the germination rates for some plant species, but not for others. We hypothesized that passage through the digestive tract of a coyote would increase the germination rates of C. reticulata. To test this hypothesis, we collected 17 coyote scats containing visible hackberry fruits from along the Bonneville Shoreline Trail east of Provo, Utah, using latex gloves. Each scat location was recorded using a GPS unit. After collecting each scat, we found the closest hackberry shrub and picked a sample of fresh hackberry fruits from it. All samples were cleaned and cold stratified and then planted into cone-tainers containing a potting soil mix and placed in the Utah Valley University greenhouse. We sowed 20 seeds from each of the 17 coyote scats and

20 seeds from each of the neighboring hackberry bushes for a total of 680 seeds. The 680 cone-tainers were labeled with plastic stakes and randomly positioned into trays that were randomly distributed on a bench in the greenhouse. The seeds, and later seedlings, were watered as needed (typically three days/week). On watering days, we checked for newly-germinated hackberry seedlings and recorded their date of emergence. Near the end of the experiment, we measured the height of each seedling. The germination rate of hackberry seeds that had passed through the

digestive tract of a coyote did not differ from the germination rate of seeds from fresh-picked fruit (42.7% vs. 46.5%, respectively; _ 2 = 0.558, df = 1, p = 0.455). However, on average, the coyote-treatment seeds took just over half as many days to germinate as did the seeds from fresh-picked (undigested) fruit (35 days vs. 69 days, respectively; p < 0.001). The seedlings from coyote-treatment seeds were 9.5% taller than were the seedlings derived from seeds from undigested fruit (6.4 cm vs. 5.8 cm, respectively; p < 0.001). Our results show that consumption by coyotes can benefit hackberries by enabling their seeds to germinate earlier in the year when

conditions for establishment are good. The earlier start on germination that coyote-ingested hackberries get translates to increased height and likely a higher rate of survival in the field.

Tbx2 Pigment Study by CRISPR/CAS9 Mutation

December 30, 0020 12:00 AM
Bell, McKenzie; Porter, Tyrel; Naylor, Emily; Domyan, Eric (Utah Valley University)
Faculty Advisor: Domyan, Eric (Utah Valley University, Biology)

The domestic rock pigeon has been the subject of selective breeding for over a hundred years and so displays an immense variety of phenotypes. This variety provides opportunities to further understand the genetic basis of phenotypic evolution. Pigmentation of pigeon feathers is controlled by multiple alleles at different loci, which influences the type and amount of melanin deposited in the feathers. A specific phenotype, known as "recessive red", consists of distinctly red plumage and is caused by a mutation that greatly reduces the expression of the gene SOX10. This gene encodes a transcription factor, known to play a key role in melanocyte maturation and proliferation. SOX10 likely regulates the transcription of multiple downstream genes but the identities of these genes are largely unknown. To identify downstream targets of SOX10, we compared the transcriptomes of regenerating feathers from wild-type and recessive red birds to identify genes that had different expression levels between the two groups. We identified 46 genes that are expressed at different levels between wild-type and recessive red birds, and thus potential targets of SOX101. Of the 46 genes, Tbx2 was selected as a starter because it is one of the only transcription factors regulated by Sox10 in melanocytes. This mechanism makes it a plausible candidate given the critical role proteins play in phenotypic expression ("TBX2 T-box transcription factor 2—Gene—NCBI," n.d.).

Temperature Effects on D. melanogaster Microbiota Content

December 30, 0020 12:00 AM
Not yet published (Brigham Young University)
Faculty Advisor: Chaston, John (Brigham young University, Life Sciences)

Within an organism's gut are many strains of bacteria that are constantly interacting with their host. Microbiota composition has been shown to impact many aspects of host health such as metabolism, fat-storage, starvation resistance, and reproduction. Certain behaviors and outcomes have been correlated with certain microbial taxa present in the host gut.

D. melanogaster serves as a useful tool for studying this relationship because its microbiota contains relatively few bacterial strains and is both widely studied and largely understood. Previous research within our lab involving D. melanogaster has found trends in many life-history strategies (ie. reproduction, fecundity, lifespan) that correlate with the presence of certain gut bacteria. While there are many aspects of health that microbiota composition affects, there are also a variety of factors that impact microbiota composition thus leading to these end results.

This experiment seeks to further understand the role that environment has in determining microbiota composition. By rearing gnotobiotic flies in environments that differ in temperature, we can then analyze microbiota content to see if any fluctuations occur due to environmental temperature. If temperature is found to have an effect on the taxa present in fully developed D. melanogaster, we can then seek to determine whether or not there are evolutions taking place in host genotype that yield differing microbiota phenotypically.

The effect of IL-1β on Nf-_B and ICAM-1 mechanism

December 30, 0020 12:00 AM
Hendricks, Kyle; Tessem, Jeffery (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Brigham Young University; Nutrition, Dietetics, and Food Science)

Over 30 million Americans suffer from type 1 (T1D) or type 2 diabetes (T2D), the seventh leading cause of death in the US. T1D and T2D is caused by a significant decrease in pancreatic β-cell mass, resulting in the body's inability to regulate blood glucose. Specifically, T1D is classified as an autoimmune disease due to pancreatic β-cell death by the body's T cells. Nf-κB is required for T cell mediated β-cell destruction. Nf-κB interacts with ICAM-1 on the T cell and acts in conjunction with IL-1β which acts as a T cell activator. This pathway is part of the mechanism that contributes to T cell mediated cell destruction. Here we hypothesize that IL-1β is involved in the mechanism that contributes to Nf-κB and ICAM-1 binding. We will begin with an electrophoretic mobility shift assay to identify the interactions between the ICAM-1 site on IL-1β treated cells and the Nf-κB binding complex. A better understanding of this pathology can, in the future, lead to a treatment that could regulate T cell mediated death of β-cells.

The Effects of Glucolipotoxicity on Nkx6.1 Expression and Insulin Secretion in the Beta Cell

December 30, 0020 12:00 AM
Elison, Weston; Bauchle, Casey; Bunker, Libby; Stephens, Samuel; Tessem, Jeffery (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Brigham Young University; Nutrition, Dietetics and Food Science)

Type 2 Diabetes (T2D) effects hundreds of millions of people worldwide, with that number increasing rapidly. It is characterized by increased insulin resistance and dysfunctional insulin secretion. The beta cell of the pancreas is the primary insulin secreting tissue, found in the endocrine tissue of the pancreas called islets of Langerhans. In T2D beta cells become glucose intolerant and disease progression is characterized by loss of functional beta cell mass. Previous studies have shown that the transcription factor Nkx6.1 is vital for beta cell differentiation, identity, and insulin secretion. Research has indicated that Nkx6.1 expression and protein levels decrease in pancreatic islets from human donors with T2D. Our data indicates that glucolipotoxicity, a common model for obesity and diabetes in cell culture, leads to decreased Nkx6.1 mRNA expression, protein levels and nuclear localization in Ins-1 832/13 cells. Nkx6.1 regulates genes in the nucleus , and its loss inhibits proper insulin secretion. We propose that reactive oxygen species created by metabolism of excess fuel decreases Nkx6.1 expression and Nkx6.1 target gene expression, as measured by quantitative polymerase chain reaction (qPCR). Also, increased glucose concentrations causes increased Nkx6.1 protein degradation and translocation out of the nucleus. Protein levels will be measured by western blot and localization by confocal microscopy. In order to understand how these changes effect beta cell function, we will measure glucose stimulated insulin secretion by sandwich Enzyme Linked Immunosorbent Assay (ELISA). We further propose that Nkx6.1 overexpression will restore beta cell function. These results will assist in unraveling the cause of beta cell dysfunction in T2D.

Uncovering Data for Susceptible Populations: STR DNA findings on Male Rape Victims

December 30, 0020 12:00 AM
Pugh, Sam; Valentine, Julie; Miles, Leslie (Brigham Young University)
Faculty Advisor: Valentine, Julie (Brigham Young University, College Of Nursing); Miles, Leslie (Brigham Young University, College of Nursing)

Rape is generally recognized as a sexual assault by a male perpetrator to a female victim. However, sexual assault is a crime that affects all genders. Although the majority of rapes are male to female, current findings indicate that one in seventy-one men will be raped in their lifetime. Over time, research has recognized the psychological effects and underreporting that ail male rape victims. However, very little has been reported regarding short tandem repeat (STR) DNA findings from sexual assault kits of male victim rapes. These STR DNA profiles prove to be highly influential in the detainment and prosecution of perpetrators. After an extensive search for earlier publications concerning the topic, only three articles were found to have relative correlation to this topic. Current best practice is to obtain STR DNA profiles from sexual assault kit samples to enter into the FBI Combined DNA Index System (CODIS). The purpose of this study was to evaluate DNA analysis findings from 266 sexual assault kits collected from male sexual assault victims and compare predictors for the development of CODIS-eligible STR DNA profiles of male victims to female victims. Our study methodology is an exploratory, retrospective design to identify male rape victims from a sample size of 5,758 victims who received sexual assault forensic examinations with sexual assault kit evidence collection. Approximately 5% of the victims in our study were male (N=266). Male victims were found to have more physical or mental impairments. Male victim cases revealed significantly less development of STR DNA profiles and CODIS-eligible DNA profiles of the perpetrator (p=.007). Due to low STR DNA profile yields and increased targeting of mentally impaired or otherwise vulnerable male victims, we must improve our response to male victims to ensure justice to all victims of sexual assault.

Cancer Data Exploration for the Public

December 30, 0020 12:00 AM
Payne, Samuel; Paquette, Teancum; Lindgren, Caleb (Brigham Young University)
Faculty Advisor: Payne, Samuel (Brigham Young University, Life Sciences)

The National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) generates comprehensive proteogenomic data for cancer cohorts. Our goal is to bring CPTAC data to researchers and the general public. A major difficulty in accomplishing this is the large amount of variability in the programming capabilities in the public. As a solution, we created a set of interactive tutorials that instructs users on exploring CPTAC data in a way that even novice programmers can understand. However, these tutorials still require software installation, which can be complicated. In order to empower more people to confidently use, access and analyze cancer data, we are making our tutorials accessible without any installation. We plan to do this by hosting the tutorials directly using a tool called Binder. In the end this project will not only improve the quality of user experience with CPTAC, but also improve the quality of their experience accessing a vast amount of cancer data.

Beta Cell Heterogeneity: Nkx6.1 Binding Partners

December 30, 0020 12:00 AM
Littlefield, Connor; Tessem, Jeffery (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Brigham Young University, NDFS)

The transcription factor Nkx6.1 is essential for beta cell growth and function. Given that Nkx6.1 is expressed in beta cells undergoing high level expansion, our lab demonstrated that Nkx6.1 overexpression in primary rat islets was sufficient to induce beta cell proliferation and enhance glucose stimulated insulin secretion. However, while these phenotypes are evident in islets from young animals, islets from aged animals fail to induce proliferation or increased insulin secretion. One reason for why Nkx6.1 fails to drive proliferation or increase insulin secretion is due to lost binding partners that allow it to control gene transcription. We hypothesize that loss of Nkx6.1 binding partners curtails its ability to induce gene transcription that leads to proliferation and enhanced glucose stimulated insulin secretion. To test this hypothesis we have used Nkx6.1 BioID to define by mass spectrometry the proteins that interact with Nkx6.1 Here we define three novel interactors, Mef2D, Sirt7, PDX1. This finding will provide us with a greater understanding of Nkx6.1 function in the beta cell, provide us with new gene targets essential for Nkx6.1 function, and allow us to begin to apply these findings to aged beta cells.

Census and Distribution Analysis of Alouatta palliata (mantled howler monkey) in La Selva Biological Station

December 30, 0020 12:00 AM
Smith, Mick; Desdames, Chloe (University of Utah)
Faculty Advisor: Seaboch, Melissa (University of Utah, Anthropology)

Census and sampling work are important because they provide critical information on population size, distribution, and habitat preference — all important factors in conservation. La Selva Biological station is located on the north eastern side of Costa Rica and is a protected biological reserve. It is home to three species of primates including Alouatta palliata, commonly known as the mantled howler monkey. It is comprised of primary forest that has been undisturbed by human forces and secondary forest that is regenerating from past disturbances, such as deforestation. Past research conducted on howler monkeys shows they prefer primary forest over secondary because primary forests have higher species richness and a wider range of trees which provides food for howler monkey's selective diet. I predict that the majority of A. palliata in Costa Rica will be located in primary forest because it offers more resources. I censused 11 established trails at La Selva (two trails in primary forest, seven trails in secondary forest, and two trails crossing both forest types). For each howler monkey encountered, I recorded the location, forest type, and group size. I identified four different groups of A. palliata with group size ranging between 6-10 individuals. One group was located in primary forest and three groups in secondary forest; thus, my hypothesis that A. palliata would prefer primary forests was not supported. Anecdotally, A. palliata were observed more frequently around rivers or streams. This could indicate that rather than being concerned with primary versus secondary forest, they prefer riparian habitats found along the banks of rivers or other actively moving sources of water. A study conducted by Stoner found howler monkeys in riparian habits supporting this hypothesis. This type of research continues to provide critical information for understanding primate's habitats which helps with conservation of species.

Changes in Islet Morphology Over the Axis of Age

December 30, 0020 12:00 AM
Aitken, Talon; Jensen, Daelin; Baxter, Melanie (Brigham Young University)
Faculty Advisor: Tessem, Jeffrey (Brigham Young University, NDFS)

Diabetes Mellitus, a condition characterized by hyperglycemia resulting from defects in insulin secretion or effectiveness, affects over 8.5% of the adult US population. Both type one and type two diabetes have the common characteristic of a decrease of functional beta-cell mass from the islets of Langerhans, located within the pancreas. The upregulation of genes known to induce beta-cell growth and proliferation results in an increase of functional beta-cell mass in young cells but not in their aged counterparts. This age-related occurrence - under nonpathologic conditions — is poorly understood. For this study, the morphological differences between young islets and aged islets are studied to provide insight as to the reason behind this refractory behavior. Immunostaining methods show significant contrast been percentages of insulin-positive beta-cell area in the pancreata of young vs. old-aged rats.

Chemogenetic stimulation of connexin-36 expressing VTA GABA neurons enhances DA neuron firing rate

December 30, 0020 12:00 AM
Tuttle, Jared; Payne, Andrew; Obray, J Daniel; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

A subpopulation of ventral tegmental area (VTA) GABA neurons express connexin-36 (Cx36) gap junctions (GJs). Activation of GJ-mediated electrical coupling between VTA GABA neurons supports brain stimulation reward and alcohol reward is lowered in Cx36 KO mice due to a hyper-dopamine (DA) state. The aim of this study was to further evaluate the role of a subpopulation of Cx36+ VTA GABA neurons in alcohol reward and dependence. To accomplish this study, we customized a Gq-coupled Designer Receptors Exclusively Activated by Designer Drugs (DREADDs) viral vector to only express in Cx36+ neurons (AAV8.hCx36.hM3D(Gq)-mCherry.WPRE.rBG) in the VTA. The hM3Dq viral vector was infused into male CD-1 GAD GFP mice and male Wistar rats. The animals were then given 10-14 days to recover prior to experimentation. A control virus (AAV9.CB7.CI.mCherry.WPRE.rBG) was used for comparison. We implemented standard cell-attached mode electrophysiology to evaluate the effects of clozapine-n-oxide (CNO; the ligand for DREADDs) on VTA GABA and DA neuronal activity. We found a robust enhancement of VTA GABA neuron firing rate in hM3Dq+ neurons with 20 _M CNO ex vivo. Surprisingly, while investigating CNO effects on VTA DA neuron firing rate, we found that CNO activation of hM3Dq+ VTA GABA neurons increased DA neuron activity, suggesting that Cx36+ VTA GABA neurons indirectly modulate local VTA DA neurons. Intraperitoneal CNO (3 mg/kg) also enhanced the firing rate of VTA GABA neurons in vivo. Administration of CNO reduced ethanol consumption (drink-in-the-dark paradigm) in both ethanol naïve and ethanol dependent hM3Dq-injected mice as compared to controls, suggesting that activation of Cx36+ neurons in the VTA is enough to block ethanol consumption in both naïve and dependent animals. Taken together, these findings support previous studies indicating that enhanced electrical coupling between VTA GABA neurons is rewarding and promotes reward and lowers the hedonic value of ethanol.

Comparative anatomy and connectivity of the Aii amacrine cell in mouse and rabbit retina

December 30, 0020 12:00 AM
Sigulinsky, Crystal; Anderson, James; Emrich, Daniel; Rapp, Christopher; Dahal, Jeebika; Pfeiffer, Rebecca; Rapp, Kevin; Yang, Jia-Hui; Watt, Carl; Marc, Robert; Jones, Bryan (University of Utah)
Faculty Advisor: Jones, Bryan (University of Utah, Ophthalmology/Visual Sciences)

Purpose: Mouse retina differs structurally from rabbit retina, as it is thicker and vascular, while rabbit retina is thinner and avascular. The implications of these differences on neuronal morphology and connectivity is unclear. We compare the morphology and connectivity of the Aii amacrine cell (AC) at ultrastructural precision in connectomes of mouse (RC2) and rabbit (RC1) retina.

Methods: RC1 and RC2 are 0.25 mm diameter volumes built by automated transmission electron microscopy at 2 nm/pixel resolution. RC1 is from a 13 month old, female Dutch Belted rabbit. RC2 is from a 5 month old female C57BL/6J mouse. The Viking application was used to annotate Aii ACs.

Results: Mouse Aii ACs are elongated with a prominent neck region. Lobular appendages in both species extend from the soma, neck and proximal arboreal dendrites in the OFF sublamina, forming reciprocal synapses with OFF cone bipolar cells (BCs). In rabbits, multiple arboreal dendrites emerge from the base of the neck, branch and travel obliquely through the ON sublamina, forming gap junctions with ON cone BCs, neighboring Aii ACs, and itself. They extend laterally at the base of the IPL, collecting ribbon input from rod BCs. In contrast, mouse arboreal dendrites branch from a single primary dendrite, travel vertically through the IPL with limited self-interaction, and terminate at variable depths that align with the more broadly ramified axon terminals of mouse rod BCs. Synaptology reveals greater output in the OFF vs ON layer in mouse versus rabbit. Uniquely, descending axons of mouse ON cone BCs form gap junctions with Aii AC somas.

Conclusions: Lateral expansion of rabbit Aii ACs may be attributable to eccentricity. However, morphological differences correlate with connectivity differences. Comparative anatomy connectomics is essential for understanding implications of retinal structure on neuronal morphology and connectivity underlying network differences between the mouse and rabbit.

Differences in anthropometric characteristics between intermediate and high level climbers

December 30, 0020 12:00 AM
Miriam Reber; Ethan Del Toro; Holden Lyman; Weston Hargis; Travis Ficklin (Dixie State University)
Faculty Advisor: Ficklin, Travis (Dixie State University, Health and Human Performance)

In recent years sport climbing has increased in popularity, and with that have come questions regarding what factors improve performance. While multiple studies have examined the effect of anthropometric factors on injury in climbing, few have examined their relationship with climbing performance. Therefore, the purpose of this study is to compare the anthropometric measures of high-level to intermediate level climbers to determine if certain body types, or dimensions, lend themselves to better performance in climbing.

Twenty-one subjects were divided into an intermediate (INT) or high-level (HL) group based on highest graded climb achieved. Various measures including height, limb lengths, and experience. These were compared between the two groups using t-tests.

Significant differences were found in the number of days climbed per week (HL 2.9±1.1, INT 2.17±0.6, p = 0.03), and the ratios of upper arm to full arm length (HL 0.44±0.05, INT 0.41±0.02, p=0.03), and trunk to height (HL 0.26±0.03, INT 0.23±0.01, p=0.01). There were also statistical trends towards years of experience (HL 5.46±3.8, INT 3.39±1.8, p = 0.06), and trunk length (HL 44.96±7.1cm, INT 41.28±2.7cm, p=0.06).

The current data suggest that for the levels of climbing examined (5.9-5.13b on the Yosemite Decimal Scale) a greater trunk to height ratio, greater upper arm to arm length ratio, and increased frequency of practice (a variable within the climber's control) may positively impact climbing ability.

Effects of Exercise on Subjective Feelings of Fatigue: A Randomized Crossover Study

December 30, 0020 12:00 AM
Savage, Ryland; Stevens, Andrew; Hicks, Joseph (Brigham Young University)
Faculty Advisor: Bailey, Bruce (Brigham Young University, Exercise Science)

Purpose: This study examined the effect of different intensities of exercise on subjective feelings of fatigue both immediately following exercise and after 60 minutes of intense cognitive testing in men and woman.
Methods: These results come from a secondary analysis of a larger randomized crossover study examining the different levels of exercise intensity on cognitive performance. We recruited 228 men and woman to participate in the study. Each participant was tested after three exercise conditions: moderate (35% VO2 max), vigorous (70% VO2 max), and sedentary (no exercise). Each exercise condition was randomized and each test was separated by one week. After each 40-minute exercise condition, we administered a visual analog scale to evaluate subjective feelings of fatigue. This assessment of fatigue was delivered before treatment, immediately after treatment and then again after a variety of cognitive tasks were performed for the duration of one hour.
Results: For the sedentary condition, feelings of fatigue increased after the 40-minute intervention (p<0.001) and decreased after 60 minutes of cognitive work but remaining elevated compared to baseline (p<0.01). For the moderate condition, feelings of fatigue did not change immediately after exercise (p=0.063) but then increased after 60 minutes of cognitive work (p<0.001). For vigorous condition, feelings of fatigue increased after exercise(p<0.001) and remained elevated after performing the cognitive tasks (p=0.163). Following the 40-minute intervention, fatigue was highest after the sedentary condition, followed by the vigorous condition and did not change after completion of the moderate condition. Following 60 minutes of cognitive work, fatigue was highest in the vigorous condition (p<0.001) and did not differ between the sedentary and moderate conditions (p=0.063).
Conclusion: The results of this study show that moderate exercise has no significant impact on feelings of fatigue but exercise at a higher intensity and being sedentary increase fatigue. Doing cognitive work increases fatigue if exercise precedes the tasks but being sedentary beforehand decreases feelings of fatigue during cognitive tasks. This suggests cognitive work is usually draining, but if performed after sedentary or low activity states such as watching TV, cognitive work will be invigorating and help feel more alert.

Effects of Exercise on Subjective Feelings of Vitality: A Randomized Crossover Study

December 30, 0020 12:00 AM
Stevens, Andrew; Hicks, Joseph; Savage, Ryland; Bailey, Bruce (Brigham Young University)
Faculty Advisor: Bailey, Bruce (Life Sciences, Exercise Science)

Purpose: This study examined the effect that differing exercise intensities have on subjective ratings of vitality both immediately following the condition and after 60 minutes of intense cognitive testing.
Methods: These findings come as a secondary analysis of a larger randomized crossover study that examined the effects of differing exercise intensities on cognitive performance. We recruited 228 men and women in roughly equal numbers to participate in the study. Each participant reported to the study lab four times one week apart. During the first day the participants ran a VO2 max test to establish pacing and baseline values. During the next three visits the participant completed a subjective vitality questionnaire before exercise, after 40 minutes of exercise or watching a video, and after 60 minutes of cognitive testing. The exercise conditions of vigorous (70% VO2 Max), moderate (35% VO2 Max) and sedentary activity (watching a video) were randomly assigned each week.
Results: The vitality rating before exercise was not significantly different between the three conditions with a mean rating of 19.9 ± 8.6 cm. After the sedentary condition, subjective ratings of vitality decreased from 19.9 cm to 12.5 cm after the condition and increased to 15.0 cm after the cognitive testing, remaining below pre-exercise values. After the moderate exercise condition, vitality did not change significantly after exercise (20.2 cm to 21.0 cm) but was lower following the cognitive tasks (15.9 cm). Vitality was slightly elevated following the vigorous exercise condition (19.8 cm to 21.3 cm) but went down after the cognitive tasks (17.1 cm). Vitality ratings did not differ significantly between exercise conditions at any time. The sedentary condition was lower than both exercise conditions after the 40-min intervention (p<0.001) and was lower than the vigorous exercise condition after the cognitive tasks (p<0.001).
Conclusion: Sedentary tasks may reduce subjective feelings of energy and vitality and this subjective evaluation remains suppressed after a period of cognitive exertion. Feelings of vitality and energy remain similar before and after exercise (vigorous or moderate) but then reduce after cognitive exertion. Vigorous exercise may be slightly beneficial for subjective feeling of vitality after exercise and following extended cognitive exertion.

Effects of Grape Seed Extract Metabolites on ß-cell Proliferation and Function

December 30, 0020 12:00 AM
Beales, Joseph; Lloyd, Trevor; Krueger, Emily; Barlow, Andrew (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Life Sciences; Nutritional, Dietetics, and Food Science)

Worldwide, an estimated 415 million people suffer from diabetes.1 Diabetes is characterized by chronic dysfunction of the pancreatic ß-cell, which leads to unregulated insulin secretion and abnormal blood glucose levels. Therefore, methods which increase the number of ß-cells or improve their function have potential for complementary treatment of type 2 diabetes. Compounds such as antioxidants and their gut metabolites have received attention in literature as having potential ß-cell-regulating properties.2,3 Therefore, we hypothesize that supplementation of grape seed extract (GSE), which is rich in antioxidants, will enhance ß-cell proliferation and insulin secretion. Accordingly, we obtained metabolites, derived from rats on either a control or grape seed extract diet, to measure the metabolites' impact on ß-cell function through in vitro assays such as glucose stimulated insulin secretion (GSIS) and 3H-thymidine incorporation. Discoveries regarding GSE metabolites' effects on ß-cell function could be fundamental to understanding ß-cell regulation and potential pharmaceutical or dietary treatments for diabetes.

1 Ogurtsova, K., et al. "IDF Diabetes Atlas: Global Estimates for the Prevalence of Diabetes for 2015 and 2040." Diabetes Research and Clinical Practice, Elsevier, 31 Mar. 2017, www.sciencedirect.com/science/article/pii/S0168822717303753?via%3Dihub.

2 Bajaj, Sarita, and Afreen Khan. "Antioxidants and diabetes." Indian journal of endocrinology and metabolism vol. 16,Suppl 2 (2012): S267-71. Doi:10.4103/2230-8210.104057

3 Tsuda, Takanori. "Recent Progress in Anti-Obesity and Anti-Diabetes Effect of Berries." MDPI, Multidisciplinary Digital Publishing Institute, 6 Apr. 2016, www.mdpi.com/2076-3921/5/2/13.

Effects of TrkB activation by alcohol withdrawal-mediated secretions of BDNF following chronic alcohol exposure

December 30, 0020 12:00 AM
Murley, Jordan; Stockard, Alyssa; Payne, Andrew; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)

Brain-derived neurotrophic factor (BDNF) is implicated in varied physiological processes. Its main receptor in the central nervous system is tyrosine receptor kinase B (TrkB), and the main ligand for TrkB in the central nervous system is BDNF. It has been shown previously that activating TrkB can cause a downregulation of the chloride-exporting potassium chloride cotransporter 2 (KCC2), presumably resulting in a decreased chloride gradient. It is hypothesized that this down-regulation, caused by an increase in BDNF levels, creates hyperexcitable GABA neurons in the ventral tegmental area (VTA) due to a reduced efficacy of inhibitory currents. Here we investigate this mechanism of adaptation in the context of chronic alcohol exposure. We demonstrate that BDNF levels are elevated in the VTA during withdrawal from chronic alcohol exposure. We also observe that blocking TrkB activity decreases alcohol seeking behavior. Further, we investigate the expression patterns of KCC2 in connection with chronic alcohol administration. Additional work is underway to validate this mechanism and further elucidate its putative role in alcohol dependence.

Engineered bacterial tight junctions: a high-throughput method to characterize claudins and identify epithelial modulators

December 30, 0020 12:00 AM
Rollins, Jay; Whitney, Jordan; Hope, Sandra; Mizrachi, Dario (Brigham Young University)
Faculty Advisor: Mizrachi, Dario (Brigham Young University, Physiology and Developmental Biology)

Epithelial and endothelial tissues form selectively permeable barriers, with the permeability largely controlled by intercellular tight junctions. Claudin (CLDN) proteins are critical components of these tight junctions, making them the gatekeepers that control the paracellular space in multicellular organisms. CLDN proteins are thus targets for studies on epithelial and endothelial absorption, to therefore learn how to regulate them for potential drug delivery or therapeutics. CLDN characterization is still in progress. Previously, the relative strength of each member of the CLDN family was unknown. Additionally, no high-throughput method to study absorption enhancers or inhibitors had been found.
Through CLDN expression in Escherichia coli, we determined the relative strength of each CLDN protein and confirmed the effects of various absorption enhancers from previous studies. Therefore, we propose that CLDN expression in Escherichia coli is a valid model for the study of tight junctions and that, through flow cytometry, it is a high-throughput method for interrogating large libraries of potential drug delivery compounds. Using CLDN 2 because of its role in cancer-metastasis prevention and its measured sensitivity towards epithelial modulators, we studied a fifty thousand compound library (DIVERSet-CL Library) to identify absorption moderators, drug delivery compounds, and possible cancer-metastasis prevention.

Evaluating the use of Drones for Yield Estimates, Disease Detection, and Other Problems in Agriculture

December 30, 0020 12:00 AM
Nischwitz, Claudia; Compton, Tyson (Utah State University)
Faculty Advisor: Nischwitz, Claudia (College of Science, Biology Department)

This research evaluates the use of Unmanned Aerial Vehicles (UAVs) in agricultural applications. We center our research on early disease detection and yield estimation in vegetable crops using aerial imagery and computer software. Previous research on UAV use in agriculture has addressed topics such as soil and field analysis (Long, 2017), Precision Viticulture in Italy (Matese, et al., 2015), and other areas pertinent to agriculturists. Our research builds on previous studies and aims to provide Utah farmers with knowledge and tools to increase agricultural productivity. A DJI Inspire drone is used with both a traditional light camera and a Near-Infrared (NIR) camera. Normal and NIR images are taken at the USU Research Farm in Kaysville Utah, and over local farm fields in Utah throughout the growing season. Unhealthy plants, identified from the aerial images, are tested at the USU Plant Pathology lab to identify diseases. Computer software (ImageJ, Microsoft ICE, and MATLAB) is used to process the images and collect crop health and yield estimate data. At the end of the growing season, the yield for each crop is measured and correlated to the aerial image data to create a predictive model for yield. Some plant diseases including Beet curly top virus in tomato and powdery mildew in squash are readily identified. We find that yield estimation with aerial imagery works well for specific crops. Potato yield was correlated with plant size at different numbers of days after planting. Further tests in coming years will provide validation for these results. Our current data show that the use of an UAV can be a valuable tool for early disease detection and yield estimation in vegetable crops.

Exploring the Ability of 6 Novel Phages in Reducing and Inhibiting MRSA Biofilms

December 30, 0020 12:00 AM
MacLachlan, Aileen; Berges, Bradford (Brigham Young University)
Faculty Advisor: Berges, Bradford (Life Sciences, Microbiology and Molecular Biology)

Staphylococcus Aureus (SA) is a well-known human pathogen causing infection in hospital settings world-wide. Given that SA is becoming increasingly resistant to antibiotics, the need to discover alternative treatments is urgent. One path that SA uses to combat antibiotics is by forming biofilms. Biofilms are microbial cell communities that form on surfaces and employ a complex extracellular polysaccharide matrix to protect the bacteria. In the past, bacteriophage (phage) has been investigated as a potential alternative to treat methicillin-resistant SA (MRSA) and break down its biofilm. Recently, students from Dr. Berges' laboratory isolated 6 novel strains of phage. In a recently published paper from Dr. Berges' lab, these phages demonstrated significant reduction of planktonic strains of SA and MRSA.

In this project, we further explore the ability of these 6 phages in breaking down biofilms from hospital associated SA strains. We plan to measure the reduction of SA biofilms caused by these novel phages against a control. The reduction results will be analyzed with previous research results to detect the presence of a polysaccharide degrading enzyme for the purpose of future research. In addition, we also plan on measuring the ability of the phage in preventing biofilm formation.

Finding the interactors of Cbf1 and its role in the regulation of respiration and lipid biosynthesis

December 30, 0020 12:00 AM
Sirrine, Michael; Grose, Julianne (Brigham Young University)
Faculty Advisor: Grose, Julianne (Brigham Young University, Microbiology and Molecular Biology)

PAS kinase is a serine/threonine protein kinase known to regulate the pivotal switch between cellular respiration and lipid biosynthesis. One substrate of PAS kinase is Cbf1, a known transcription factor which regulates lipid biosynthesis in yeast and mammalian cells (human homolog USF1). USF1 is associated with hyperlipidemia and hypercholesterolemia in several GWAS studies. We have recently identified and characterized a role for Cbf1 in the regulation of respiration as well, making it a key player in partitioning cellular resources towards respiration versus lipid metabolism. The goal of this proposal is to use the powerful tools of yeast genetics to identify physical interactors of Cbf1 in order to characterize the molecular mechanisms of its action.

Genomic Analyses Between Neofelis nebulosa and Neofelis diardi Aid in Conservation Efforts for Clouded Leopards

December 30, 0020 12:00 AM
Bursell, Madeline; Dikow, Rebecca; Johnson, Warren; Koepfli, Klaus-Peter; Frandsen, Paul (Brigham Young University)
Faculty Advisor: Frandsen, Paul (Life Sciences, Plant and Wildlife Sciences)

Due to decreasing costs in genome sequencing, conservation genomics is a field that has experienced immense growth over the last few years. By comparing whole genome data within threatened and endangered populations, we can estimate important elements in conservation such as levels of homozygosity and demographic histories that reveal the level of endangerment of a species. This information informs conservation priorities and captive breeding programs. In the present study, we focus on two species of clouded leopards: Neofelis nebulosa and Neofelis diardi. N. nebulosa is a species of clouded leopard that lives in mainland southeast Asia. N.diardi inhabits the islands of Sumatra and Borneo in Indonesia. While these two species were initially thought to be a single species, evidence, such as differences in fur color and sizes of cloud markings, hint that they have diverged into two species. To shed more light on the genomic differences between them, we sequenced, assembled, and annotated whole genomes from both species. With genomes, we will explore differences in demographic histories, variation in blocks of homozygosity, and generate a whole genome phylogeny with other large cat species. Using these analyses, we share insights that will inform the conservation status of the two species.

Great Salt Lake Halophilic Archaea: A model for mineral-entrapment of life

December 30, 0020 12:00 AM
Bonnie K. Baxter (Westminster College)
Faculty Advisor: Baxter, Bonnie (Westminster College, Biology)

Gypsum is a calcium sulfate mineral in a hydrated form. NASA's Mars Exploration Rover, Opportunity, found veins of gypsum deposited by water in 2011(Figure 7), and gypsum has been detected on Mars as early as 2005 by the ESA's Mars Express Orbiter. On Earth, gypsum is formed in hypersaline environments, in minerals left behind when water evaporates and it can trap microorganisms in fluid inclusions. Gypsum obtained from Great Salt Lake was used to develop a method to extract halophilic archaea and culture it in the lab. Our studies show that the mineral was difficult to dissolve in aqueous microbiological media. We tested various methods of dissolution involving mechanical crushing and tested solvents including microbiological media. We also employed a variety of cultivation methods. We will present data on best practices for obtaining halophilic microorganisms from gypsum samples. The method obtained could be used to isolate potential microorganisms present in gypsum samples from Mars.