2020 Abstracts
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Micropropagation of Lepidium ostleri, an edaphic endemic plant species
DeNittis, Alyson; Larson, Joseph; Perez, June; Kopp, Olga R. (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology)
Lepidium ostleri (Ostler's peppergrass) is an edaphic endemic plant species restricted to Ordovician limestone outcrops of the San Francisco Mountains in western Utah. L. ostleri is a species of conservation concern due to its restricted range and proximity to modern mining operations. The purpose of this research is to develop a micropropagation protocol to produce mature plants for population augmentation and introduction to support conservation efforts. De novo shoot organogenic response in tissue explants was highest with various concentrations and combinations of 6-Benzylaminopurine (BAP) and indole-3-acetic acid (IAA). In vitro and ex vitro rooting experiments were conducted on micropropagated plantlets supporting adequate number of shoots, with highest success in pulse treatments of indole-3 butyric acid (IBA). Plantlets were then acclimated to external environments for further propagation. Additional effects of different plant growth regulators, media, and growth conditions will be described. Methods for organogenesis for L. ostleri has not been published and this represents the first known instance of successful micropropagation of this rare plant species. Establishing a micropropagation protocol for L. ostleri provides valuable information for potential restoration or relocation efforts.
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology)
Lepidium ostleri (Ostler's peppergrass) is an edaphic endemic plant species restricted to Ordovician limestone outcrops of the San Francisco Mountains in western Utah. L. ostleri is a species of conservation concern due to its restricted range and proximity to modern mining operations. The purpose of this research is to develop a micropropagation protocol to produce mature plants for population augmentation and introduction to support conservation efforts. De novo shoot organogenic response in tissue explants was highest with various concentrations and combinations of 6-Benzylaminopurine (BAP) and indole-3-acetic acid (IAA). In vitro and ex vitro rooting experiments were conducted on micropropagated plantlets supporting adequate number of shoots, with highest success in pulse treatments of indole-3 butyric acid (IBA). Plantlets were then acclimated to external environments for further propagation. Additional effects of different plant growth regulators, media, and growth conditions will be described. Methods for organogenesis for L. ostleri has not been published and this represents the first known instance of successful micropropagation of this rare plant species. Establishing a micropropagation protocol for L. ostleri provides valuable information for potential restoration or relocation efforts.
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Deep learning for image segmentation
Jenkins, Abigail; Baugh, Makinnon; Frandsen, Paul; White, Alexander; Dikow, Rebecca (Brigham Young University)
Faculty Advisor: Frandsen, Paul (Life Sciences, Plant and Wildlife Sciences)
Historically, physical plant specimens have been preserved and mounted on paper sheets and stored in plant collections, or herbaria. Herbarium collections are used for a wide variety of research purposes, including plant taxonomy, ecology, and evolutionary biology. The process of digitizing the herbarium sheets is simple and involves taking high resolution photos of each sheet and recording the corresponding metadata and attributes of the particular sample. Digitized herbarium sheets can be useful for a variety of purposes, and, by making images freely available online, they become immediately accessible to the scientific community, facilitating remote analysis. In addition, in a digital format, the images become computable and usable for purposes such as training deep learning models for classification or analysis of morphology.
While the process of digitizing is simple, herbarium sheets contain other features not directly representative of the plant, such as annotations, labels, museum stamps, color palettes, and rulers. There are additional inconsistencies in the herbarium sheets that are introduced through staining, record keeping, and natural degradation. Taken together, this information can contribute a substantial amount of noise if one is to use the image for downstream research analysis concerning the pattern, shape, or color of the specimen. We have developed a pipeline to filter this extraneous information, using image segmentation (whereby the specimen material is partitioned from the background) and deep learning.
We present this pipeline for generating training data for image segmentation tasks along with a novel dataset of highly resolved image masks segmenting plant material from background noise. We used this dataset to train a neural network to segment plant material in herbarium sheets more generally, and our method is applicable to other museum data sources where masking may be useful for quantitative analysis of patterns and shapes.
Faculty Advisor: Frandsen, Paul (Life Sciences, Plant and Wildlife Sciences)
Historically, physical plant specimens have been preserved and mounted on paper sheets and stored in plant collections, or herbaria. Herbarium collections are used for a wide variety of research purposes, including plant taxonomy, ecology, and evolutionary biology. The process of digitizing the herbarium sheets is simple and involves taking high resolution photos of each sheet and recording the corresponding metadata and attributes of the particular sample. Digitized herbarium sheets can be useful for a variety of purposes, and, by making images freely available online, they become immediately accessible to the scientific community, facilitating remote analysis. In addition, in a digital format, the images become computable and usable for purposes such as training deep learning models for classification or analysis of morphology.
While the process of digitizing is simple, herbarium sheets contain other features not directly representative of the plant, such as annotations, labels, museum stamps, color palettes, and rulers. There are additional inconsistencies in the herbarium sheets that are introduced through staining, record keeping, and natural degradation. Taken together, this information can contribute a substantial amount of noise if one is to use the image for downstream research analysis concerning the pattern, shape, or color of the specimen. We have developed a pipeline to filter this extraneous information, using image segmentation (whereby the specimen material is partitioned from the background) and deep learning.
We present this pipeline for generating training data for image segmentation tasks along with a novel dataset of highly resolved image masks segmenting plant material from background noise. We used this dataset to train a neural network to segment plant material in herbarium sheets more generally, and our method is applicable to other museum data sources where masking may be useful for quantitative analysis of patterns and shapes.
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Effects of TrkB activation by alcohol withdrawal-mediated secretions of BDNF following chronic alcohol exposure
Murley, Jordan; Stockard, Alyssa; Payne, Andrew; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)
Brain-derived neurotrophic factor (BDNF) is implicated in varied physiological processes. Its main receptor in the central nervous system is tyrosine receptor kinase B (TrkB), and the main ligand for TrkB in the central nervous system is BDNF. It has been shown previously that activating TrkB can cause a downregulation of the chloride-exporting potassium chloride cotransporter 2 (KCC2), presumably resulting in a decreased chloride gradient. It is hypothesized that this down-regulation, caused by an increase in BDNF levels, creates hyperexcitable GABA neurons in the ventral tegmental area (VTA) due to a reduced efficacy of inhibitory currents. Here we investigate this mechanism of adaptation in the context of chronic alcohol exposure. We demonstrate that BDNF levels are elevated in the VTA during withdrawal from chronic alcohol exposure. We also observe that blocking TrkB activity decreases alcohol seeking behavior. Further, we investigate the expression patterns of KCC2 in connection with chronic alcohol administration. Additional work is underway to validate this mechanism and further elucidate its putative role in alcohol dependence.
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences; Psychology)
Brain-derived neurotrophic factor (BDNF) is implicated in varied physiological processes. Its main receptor in the central nervous system is tyrosine receptor kinase B (TrkB), and the main ligand for TrkB in the central nervous system is BDNF. It has been shown previously that activating TrkB can cause a downregulation of the chloride-exporting potassium chloride cotransporter 2 (KCC2), presumably resulting in a decreased chloride gradient. It is hypothesized that this down-regulation, caused by an increase in BDNF levels, creates hyperexcitable GABA neurons in the ventral tegmental area (VTA) due to a reduced efficacy of inhibitory currents. Here we investigate this mechanism of adaptation in the context of chronic alcohol exposure. We demonstrate that BDNF levels are elevated in the VTA during withdrawal from chronic alcohol exposure. We also observe that blocking TrkB activity decreases alcohol seeking behavior. Further, we investigate the expression patterns of KCC2 in connection with chronic alcohol administration. Additional work is underway to validate this mechanism and further elucidate its putative role in alcohol dependence.
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Development of a New Molecular Predictor for Risk of Melanoma Brain Metastases
Stehn, Christopher; Colman, Howard; Boucher, Kenneth; Grossman, Allie H; Holmen, Sheri L (University of Utah)
Faculty Advisor: Holmen, Sheri (University of Utah, Surgery)
Despite therapeutic advances in the treatment of melanoma, development of brain metastases continues to be a major cause of treatment failure. Prognosis for patients with brain metastases is exceedingly poor, therefore the development of sensitive and specific biomarkers to predict which melanoma patients are at highest risk for disease progression are needed. To accomplish this goal, we developed a novel combined molecular/clinical/pathologic predictor of brain metastasis risk. We first analyzed multiple gene expression datasets including The Cancer Genome Atlas (TCGA; n = 437) and an independent series from the European Genome-Phenome Archive (n = 183) and identified a list of 60 consensus genes that is robustly predictive of development of melanoma brain metastases (p < 0.05; FDR 5%). Next, we performed a similar analysis of association of miRNAs and melanoma brain metastasis risk which identified a set of miRNAs with significant predictive power. An optimized combined set of 15 mRNA and miRNA markers was a better predictor of brain metastasis risk than either mRNA or miRNA list alone when applied to the TCGA data set. The combined predictor was most sensitive in separating patients with no metastases from those with either brain metastases or systemic metastases. Current efforts are focused on optimizing miRNA and mRNA separation of patients specifically with brain metastases from those with other metastases using a machine learning linear classifier, and with integrating the expression classifier with other clinical and pathologic predictive factors including: age, stage, thickness, location, histology, ulceration, and gender. The sensitivity and specificity of the resulting clinical/molecular predictor will be validated in an independent retrospective patient dataset, and subsequently implemented in a prospective brain metastasis screening trial to determine real-world utility of this approach in preparation for prospective brain metastasis adjuvant/chemoprevention trials utilizing both immunotherapy and targeted therapy approaches.
Faculty Advisor: Holmen, Sheri (University of Utah, Surgery)
Despite therapeutic advances in the treatment of melanoma, development of brain metastases continues to be a major cause of treatment failure. Prognosis for patients with brain metastases is exceedingly poor, therefore the development of sensitive and specific biomarkers to predict which melanoma patients are at highest risk for disease progression are needed. To accomplish this goal, we developed a novel combined molecular/clinical/pathologic predictor of brain metastasis risk. We first analyzed multiple gene expression datasets including The Cancer Genome Atlas (TCGA; n = 437) and an independent series from the European Genome-Phenome Archive (n = 183) and identified a list of 60 consensus genes that is robustly predictive of development of melanoma brain metastases (p < 0.05; FDR 5%). Next, we performed a similar analysis of association of miRNAs and melanoma brain metastasis risk which identified a set of miRNAs with significant predictive power. An optimized combined set of 15 mRNA and miRNA markers was a better predictor of brain metastasis risk than either mRNA or miRNA list alone when applied to the TCGA data set. The combined predictor was most sensitive in separating patients with no metastases from those with either brain metastases or systemic metastases. Current efforts are focused on optimizing miRNA and mRNA separation of patients specifically with brain metastases from those with other metastases using a machine learning linear classifier, and with integrating the expression classifier with other clinical and pathologic predictive factors including: age, stage, thickness, location, histology, ulceration, and gender. The sensitivity and specificity of the resulting clinical/molecular predictor will be validated in an independent retrospective patient dataset, and subsequently implemented in a prospective brain metastasis screening trial to determine real-world utility of this approach in preparation for prospective brain metastasis adjuvant/chemoprevention trials utilizing both immunotherapy and targeted therapy approaches.
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Effect of Mercury Chloride and Methyl Mercury
Villanueva,Xitlalli; Berthelemy Nicole (Weber State University)
Faculty Advisor: Berthelemy, Nicole (Weber State University, Zoology)
Introduction: Mercury, originating from mining and industrial activity, has been accumulating in the Great Salt Lake water and has contaminated its food web. Some of the mercury chloride (HgCl) is transformed by benthic bacteria to the more toxic monomethyl mercury (MeHg). While the effect of HgCl on the brine shrimp Artemia franciscana has been described, little is known about the effects of MeHG on this shrimp, except that it is more toxic. We correlated the tissue mercury concentrations to the amount of mercury present in the sea-water (SW). We also tested the ability of the shrimp to depurate mercury accumulated in the tissues.
Results: - Adult Artemia survived at least one week when exposed to concentrations ranging from 10-9 to 10-5g/L HgCl or MeHg. Shrimp exposed to 10-4g/L HgCl or MeHg died within two days.
Fertility was influenced by mercury exposure. The number of offspring per brood produced by females exposed to 10-6g/L or less HgCl was around 150, significantly higher than the average 80 offspring per brood produced by females exposed to 10-6g/L MeHg. When exposed to 10-5g/l HgCl and MeHg, the females brood size was 47 and 24, respectively.
- Artemia is able to maintain low level of tissue mercury, up to exposure to 10-6g/L HgCl and 10-7 g/L for MeHg. Exposure to higher mercury concentrations leads to much higher mercury levels, about 35 ppm HgCl for SW reaching 10-5g/L and 300 ppm with exposure to 10-4 MeHg.
Discussion: While both HgCl and MeHg are lethal to the shrimp, after a few days exposure, at concentration higher than 10-6 g/L, MeHg has a stronger effect on fertility, with brood size near half the size. Also, MeHg, the organic form of mercury, is accumulated in much higher level than the inorganic form. The organic form has a better ability to cross cell membranes. Since the mercury levels in the Great Salt Lake reach 55 ng/L (= 0.055 10-6g/L) and 30 ng/L (0.03 10-6 g/L) for HgCl and MeHG, respectively, the brine shrimp population is likely not affected by this pollutant.
Conclusion: Mercury has a strong effect on Artemia metabolism. We will study, next, the shrimp response to the oxidative stress induced by the mercury exposure.
Faculty Advisor: Berthelemy, Nicole (Weber State University, Zoology)
Introduction: Mercury, originating from mining and industrial activity, has been accumulating in the Great Salt Lake water and has contaminated its food web. Some of the mercury chloride (HgCl) is transformed by benthic bacteria to the more toxic monomethyl mercury (MeHg). While the effect of HgCl on the brine shrimp Artemia franciscana has been described, little is known about the effects of MeHG on this shrimp, except that it is more toxic. We correlated the tissue mercury concentrations to the amount of mercury present in the sea-water (SW). We also tested the ability of the shrimp to depurate mercury accumulated in the tissues.
Results: - Adult Artemia survived at least one week when exposed to concentrations ranging from 10-9 to 10-5g/L HgCl or MeHg. Shrimp exposed to 10-4g/L HgCl or MeHg died within two days.
Fertility was influenced by mercury exposure. The number of offspring per brood produced by females exposed to 10-6g/L or less HgCl was around 150, significantly higher than the average 80 offspring per brood produced by females exposed to 10-6g/L MeHg. When exposed to 10-5g/l HgCl and MeHg, the females brood size was 47 and 24, respectively.
- Artemia is able to maintain low level of tissue mercury, up to exposure to 10-6g/L HgCl and 10-7 g/L for MeHg. Exposure to higher mercury concentrations leads to much higher mercury levels, about 35 ppm HgCl for SW reaching 10-5g/L and 300 ppm with exposure to 10-4 MeHg.
Discussion: While both HgCl and MeHg are lethal to the shrimp, after a few days exposure, at concentration higher than 10-6 g/L, MeHg has a stronger effect on fertility, with brood size near half the size. Also, MeHg, the organic form of mercury, is accumulated in much higher level than the inorganic form. The organic form has a better ability to cross cell membranes. Since the mercury levels in the Great Salt Lake reach 55 ng/L (= 0.055 10-6g/L) and 30 ng/L (0.03 10-6 g/L) for HgCl and MeHG, respectively, the brine shrimp population is likely not affected by this pollutant.
Conclusion: Mercury has a strong effect on Artemia metabolism. We will study, next, the shrimp response to the oxidative stress induced by the mercury exposure.
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Effects of Exercise on Subjective Feelings of Vitality: A Randomized Crossover Study
Stevens, Andrew; Hicks, Joseph; Savage, Ryland; Bailey, Bruce (Brigham Young University)
Faculty Advisor: Bailey, Bruce (Life Sciences, Exercise Science)
Purpose: This study examined the effect that differing exercise intensities have on subjective ratings of vitality both immediately following the condition and after 60 minutes of intense cognitive testing.
Methods: These findings come as a secondary analysis of a larger randomized crossover study that examined the effects of differing exercise intensities on cognitive performance. We recruited 228 men and women in roughly equal numbers to participate in the study. Each participant reported to the study lab four times one week apart. During the first day the participants ran a VO2 max test to establish pacing and baseline values. During the next three visits the participant completed a subjective vitality questionnaire before exercise, after 40 minutes of exercise or watching a video, and after 60 minutes of cognitive testing. The exercise conditions of vigorous (70% VO2 Max), moderate (35% VO2 Max) and sedentary activity (watching a video) were randomly assigned each week.
Results: The vitality rating before exercise was not significantly different between the three conditions with a mean rating of 19.9 ± 8.6 cm. After the sedentary condition, subjective ratings of vitality decreased from 19.9 cm to 12.5 cm after the condition and increased to 15.0 cm after the cognitive testing, remaining below pre-exercise values. After the moderate exercise condition, vitality did not change significantly after exercise (20.2 cm to 21.0 cm) but was lower following the cognitive tasks (15.9 cm). Vitality was slightly elevated following the vigorous exercise condition (19.8 cm to 21.3 cm) but went down after the cognitive tasks (17.1 cm). Vitality ratings did not differ significantly between exercise conditions at any time. The sedentary condition was lower than both exercise conditions after the 40-min intervention (p<0.001) and was lower than the vigorous exercise condition after the cognitive tasks (p<0.001).
Conclusion: Sedentary tasks may reduce subjective feelings of energy and vitality and this subjective evaluation remains suppressed after a period of cognitive exertion. Feelings of vitality and energy remain similar before and after exercise (vigorous or moderate) but then reduce after cognitive exertion. Vigorous exercise may be slightly beneficial for subjective feeling of vitality after exercise and following extended cognitive exertion.
Faculty Advisor: Bailey, Bruce (Life Sciences, Exercise Science)
Purpose: This study examined the effect that differing exercise intensities have on subjective ratings of vitality both immediately following the condition and after 60 minutes of intense cognitive testing.
Methods: These findings come as a secondary analysis of a larger randomized crossover study that examined the effects of differing exercise intensities on cognitive performance. We recruited 228 men and women in roughly equal numbers to participate in the study. Each participant reported to the study lab four times one week apart. During the first day the participants ran a VO2 max test to establish pacing and baseline values. During the next three visits the participant completed a subjective vitality questionnaire before exercise, after 40 minutes of exercise or watching a video, and after 60 minutes of cognitive testing. The exercise conditions of vigorous (70% VO2 Max), moderate (35% VO2 Max) and sedentary activity (watching a video) were randomly assigned each week.
Results: The vitality rating before exercise was not significantly different between the three conditions with a mean rating of 19.9 ± 8.6 cm. After the sedentary condition, subjective ratings of vitality decreased from 19.9 cm to 12.5 cm after the condition and increased to 15.0 cm after the cognitive testing, remaining below pre-exercise values. After the moderate exercise condition, vitality did not change significantly after exercise (20.2 cm to 21.0 cm) but was lower following the cognitive tasks (15.9 cm). Vitality was slightly elevated following the vigorous exercise condition (19.8 cm to 21.3 cm) but went down after the cognitive tasks (17.1 cm). Vitality ratings did not differ significantly between exercise conditions at any time. The sedentary condition was lower than both exercise conditions after the 40-min intervention (p<0.001) and was lower than the vigorous exercise condition after the cognitive tasks (p<0.001).
Conclusion: Sedentary tasks may reduce subjective feelings of energy and vitality and this subjective evaluation remains suppressed after a period of cognitive exertion. Feelings of vitality and energy remain similar before and after exercise (vigorous or moderate) but then reduce after cognitive exertion. Vigorous exercise may be slightly beneficial for subjective feeling of vitality after exercise and following extended cognitive exertion.
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Ecology of Male Mating in Alfaro cultratus: Is morphology a response to the environment?
Mueller, Kaeli; Kaitlyn, Golden; Johnson, J.B. (Brigham Young University)
Faculty Advisor: Johnson, Jerry (Brigham Young University, College of Life Sciences);
Human-induced changes to the environment are causing declines in many of the world's species. Studying model organisms, such as Poeciilidae fishes, can provide crucial information about a variety of other species (Johnson & Bagley, 2011). Alfaro, a monophyletic genus within the family Poeciilidae (Bagley & Johnson, 2014), has the potential to become an exemplary model species. There is currently much scientific knowledge about the two distinct reproductive tactics of Poeciliid males. However, studies about the presence of this trait are lacking for Alfaro. Therefore, I propose adding to the current knowledge about Alfaro cultratus by researching the presence of two distinct sets of traits that accompany different male reproductive tactics. The hypothesis is that male Alfaro will show similar physical characteristics to other Poeciliids, but that these traits will not differ across varying habitats. Measurements of deceased Alfaro specimens will be analyzed to identify differences in physical traits. This will be followed by a live experiment, in which the male size differential is expected to mirror that of the deceased specimens. This research will produce novel information about Alfaro cultratus because its life history strategies have yet to be described. Many intriguing evolution questions could follow.
References:
Bagley, J. C., & Johnson, J. B. (2014). Testing for shared biogeographic history in the lower Central American freshwater fish assemblage using comparative phylogeography: Concerted, independent, or multiple evolutionary responses? Ecology and Evolution, 4(9), 1686—1705.
Johnson, J. B., & Bagley, J. C. (2011). Ecology and Evolution of Poeciliid Fishes, Chapter 4, Ecological drivers of life-history divergence.
Faculty Advisor: Johnson, Jerry (Brigham Young University, College of Life Sciences);
Human-induced changes to the environment are causing declines in many of the world's species. Studying model organisms, such as Poeciilidae fishes, can provide crucial information about a variety of other species (Johnson & Bagley, 2011). Alfaro, a monophyletic genus within the family Poeciilidae (Bagley & Johnson, 2014), has the potential to become an exemplary model species. There is currently much scientific knowledge about the two distinct reproductive tactics of Poeciliid males. However, studies about the presence of this trait are lacking for Alfaro. Therefore, I propose adding to the current knowledge about Alfaro cultratus by researching the presence of two distinct sets of traits that accompany different male reproductive tactics. The hypothesis is that male Alfaro will show similar physical characteristics to other Poeciliids, but that these traits will not differ across varying habitats. Measurements of deceased Alfaro specimens will be analyzed to identify differences in physical traits. This will be followed by a live experiment, in which the male size differential is expected to mirror that of the deceased specimens. This research will produce novel information about Alfaro cultratus because its life history strategies have yet to be described. Many intriguing evolution questions could follow.
References:
Bagley, J. C., & Johnson, J. B. (2014). Testing for shared biogeographic history in the lower Central American freshwater fish assemblage using comparative phylogeography: Concerted, independent, or multiple evolutionary responses? Ecology and Evolution, 4(9), 1686—1705.
Johnson, J. B., & Bagley, J. C. (2011). Ecology and Evolution of Poeciliid Fishes, Chapter 4, Ecological drivers of life-history divergence.
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Comparative anatomy and connectivity of the Aii amacrine cell in mouse and rabbit retina
Sigulinsky, Crystal; Anderson, James; Emrich, Daniel; Rapp, Christopher; Dahal, Jeebika; Pfeiffer, Rebecca; Rapp, Kevin; Yang, Jia-Hui; Watt, Carl; Marc, Robert; Jones, Bryan (University of Utah)
Faculty Advisor: Jones, Bryan (University of Utah, Ophthalmology/Visual Sciences)
Purpose: Mouse retina differs structurally from rabbit retina, as it is thicker and vascular, while rabbit retina is thinner and avascular. The implications of these differences on neuronal morphology and connectivity is unclear. We compare the morphology and connectivity of the Aii amacrine cell (AC) at ultrastructural precision in connectomes of mouse (RC2) and rabbit (RC1) retina.
Methods: RC1 and RC2 are 0.25 mm diameter volumes built by automated transmission electron microscopy at 2 nm/pixel resolution. RC1 is from a 13 month old, female Dutch Belted rabbit. RC2 is from a 5 month old female C57BL/6J mouse. The Viking application was used to annotate Aii ACs.
Results: Mouse Aii ACs are elongated with a prominent neck region. Lobular appendages in both species extend from the soma, neck and proximal arboreal dendrites in the OFF sublamina, forming reciprocal synapses with OFF cone bipolar cells (BCs). In rabbits, multiple arboreal dendrites emerge from the base of the neck, branch and travel obliquely through the ON sublamina, forming gap junctions with ON cone BCs, neighboring Aii ACs, and itself. They extend laterally at the base of the IPL, collecting ribbon input from rod BCs. In contrast, mouse arboreal dendrites branch from a single primary dendrite, travel vertically through the IPL with limited self-interaction, and terminate at variable depths that align with the more broadly ramified axon terminals of mouse rod BCs. Synaptology reveals greater output in the OFF vs ON layer in mouse versus rabbit. Uniquely, descending axons of mouse ON cone BCs form gap junctions with Aii AC somas.
Conclusions: Lateral expansion of rabbit Aii ACs may be attributable to eccentricity. However, morphological differences correlate with connectivity differences. Comparative anatomy connectomics is essential for understanding implications of retinal structure on neuronal morphology and connectivity underlying network differences between the mouse and rabbit.
Faculty Advisor: Jones, Bryan (University of Utah, Ophthalmology/Visual Sciences)
Purpose: Mouse retina differs structurally from rabbit retina, as it is thicker and vascular, while rabbit retina is thinner and avascular. The implications of these differences on neuronal morphology and connectivity is unclear. We compare the morphology and connectivity of the Aii amacrine cell (AC) at ultrastructural precision in connectomes of mouse (RC2) and rabbit (RC1) retina.
Methods: RC1 and RC2 are 0.25 mm diameter volumes built by automated transmission electron microscopy at 2 nm/pixel resolution. RC1 is from a 13 month old, female Dutch Belted rabbit. RC2 is from a 5 month old female C57BL/6J mouse. The Viking application was used to annotate Aii ACs.
Results: Mouse Aii ACs are elongated with a prominent neck region. Lobular appendages in both species extend from the soma, neck and proximal arboreal dendrites in the OFF sublamina, forming reciprocal synapses with OFF cone bipolar cells (BCs). In rabbits, multiple arboreal dendrites emerge from the base of the neck, branch and travel obliquely through the ON sublamina, forming gap junctions with ON cone BCs, neighboring Aii ACs, and itself. They extend laterally at the base of the IPL, collecting ribbon input from rod BCs. In contrast, mouse arboreal dendrites branch from a single primary dendrite, travel vertically through the IPL with limited self-interaction, and terminate at variable depths that align with the more broadly ramified axon terminals of mouse rod BCs. Synaptology reveals greater output in the OFF vs ON layer in mouse versus rabbit. Uniquely, descending axons of mouse ON cone BCs form gap junctions with Aii AC somas.
Conclusions: Lateral expansion of rabbit Aii ACs may be attributable to eccentricity. However, morphological differences correlate with connectivity differences. Comparative anatomy connectomics is essential for understanding implications of retinal structure on neuronal morphology and connectivity underlying network differences between the mouse and rabbit.
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Does phylogenetic relatedness influence response to heterospecific alarm cues in Brachyrhaphis rhabdophora?
Chou, Audrey; Duffy, Alexandra; Johnson, Jerald (Brigham Young University)
Faculty Advisor: Johnson, Jerald (Brigham Young University, Biology)
Upon injury, fish release chemicals that cause fear and a dramatic change in behavior in nearby members of the species. Chemical alarm cues are released from injured epidermal tissue and provide an early warning signal for individuals to detect the presence of an active predator, and potentially increase the chances of individual survival. This research project investigates the conservation of alarm cue recognition and response across species boundaries by measuring the behavioral response of Brachyrhaphis rhabdophora to the alarm cues from five different species. Since these species will be of known phylogenetic relatedness, we will determine conservation of alarm cue response as a function of phylogenetic distance. I will also discuss the method of quantifying behavioral response through the use of a two-choice flume tank to measure both changes in activity and spatial avoidance upon alarm cue exposure.
Faculty Advisor: Johnson, Jerald (Brigham Young University, Biology)
Upon injury, fish release chemicals that cause fear and a dramatic change in behavior in nearby members of the species. Chemical alarm cues are released from injured epidermal tissue and provide an early warning signal for individuals to detect the presence of an active predator, and potentially increase the chances of individual survival. This research project investigates the conservation of alarm cue recognition and response across species boundaries by measuring the behavioral response of Brachyrhaphis rhabdophora to the alarm cues from five different species. Since these species will be of known phylogenetic relatedness, we will determine conservation of alarm cue response as a function of phylogenetic distance. I will also discuss the method of quantifying behavioral response through the use of a two-choice flume tank to measure both changes in activity and spatial avoidance upon alarm cue exposure.
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Effects of Mycorrhizal Associations on Tomato Defensive Compounds
Jones, Dalton (Weber State University)
Faculty Advisor: Schramm, Katharina (Science, Botany)
Tomatoes (Solanum lycopersicum) are an important agricultural crop around the world. In order to produce food with less impact on the environment, many researchers are looking to utilize natural systems to maximize production with minimal inputs. Maximizing tomato defenses is one possible way to increase productivity. Tomatoes produce both physical and chemical defenses in response to the stress. Increasing the number of trichomes on the plant is a physical means of deterring insects from eating the plant. Trichomes come in two forms glandular trichomes and non-glandular trichomes. The non-glandular trichomes are strictly a physical defense while the glandular trichomes produce chemical defensive compounds against a wide variety of insects. Most land plants can form a symbiosis with arbuscular mycorrhizal fungi (AMF). This symbiosis has been shown to increase nutrient supply, decrease drought stress, and prime plant defenses, all increasing a plant's ability to withstand herbivory stress better. This study examines the response of trichomes and the number of chemical defenses after insect herbivory has occurred with the additional support of the AMF symbiosis. Treatments were exposed to Manduca sexta to stimulate trichome and chemical production. The extracted leaves were analyzed via gas chromatography to examine the make-up of the tomato's chemical defenses. The growth rates of M. sexta were recorded to examine the effects of tomato's chemical defenses after feeding the insects the induced tomato leaves. Measuring trichome density quantifies the change in physical defenses. The addition of the AMF increased the plant defenses, both the number of trichomes present on the plants and the quantity of the chemical defenses. Insects feeding on plants with increased defenses were also shown to have decreased growth. This study shows an alternative strategy for the use of commercial pesticides, lessening the impact of tomato crops on the ecosystem.
Faculty Advisor: Schramm, Katharina (Science, Botany)
Tomatoes (Solanum lycopersicum) are an important agricultural crop around the world. In order to produce food with less impact on the environment, many researchers are looking to utilize natural systems to maximize production with minimal inputs. Maximizing tomato defenses is one possible way to increase productivity. Tomatoes produce both physical and chemical defenses in response to the stress. Increasing the number of trichomes on the plant is a physical means of deterring insects from eating the plant. Trichomes come in two forms glandular trichomes and non-glandular trichomes. The non-glandular trichomes are strictly a physical defense while the glandular trichomes produce chemical defensive compounds against a wide variety of insects. Most land plants can form a symbiosis with arbuscular mycorrhizal fungi (AMF). This symbiosis has been shown to increase nutrient supply, decrease drought stress, and prime plant defenses, all increasing a plant's ability to withstand herbivory stress better. This study examines the response of trichomes and the number of chemical defenses after insect herbivory has occurred with the additional support of the AMF symbiosis. Treatments were exposed to Manduca sexta to stimulate trichome and chemical production. The extracted leaves were analyzed via gas chromatography to examine the make-up of the tomato's chemical defenses. The growth rates of M. sexta were recorded to examine the effects of tomato's chemical defenses after feeding the insects the induced tomato leaves. Measuring trichome density quantifies the change in physical defenses. The addition of the AMF increased the plant defenses, both the number of trichomes present on the plants and the quantity of the chemical defenses. Insects feeding on plants with increased defenses were also shown to have decreased growth. This study shows an alternative strategy for the use of commercial pesticides, lessening the impact of tomato crops on the ecosystem.
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Electrohydraulic Shockwaves as a Possible Treatment for Bacterial Biofilms
Brunetti, Bryce; Escarate, Ashley; Conway, Matthew; Slezak, Cyrill; Kopp, Olga (Utah Valley University)
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology); Slezak, Cyrill (Utah Valley University, Physics)
Purpose:
This study evaluates the effect of electrohydraulic shockwaves on Staphylococcus aureus biofilms. This system could be a great alternative to the use of antibiotics, and potentially life-saving technology that could save billions of dollars.
Background:
The rise of antibiotic-resistant bacteria is a global threat. Staphylococcus aureus is typically harmless, but this gram-positive species has become highly resistant and extremely pathogenic. Strains like MRSA and VRSA have the highest rate of drug resistance and are the leading cause of chronic bacterial infections via bacterial biofilms on medical devices. Biofilms are an aggregation of microbes that excrete an extracellular matrix providing an ideal environment for gene exchange and quorum sensing. Their complexity hinders the diffusion of antimicrobials. A proposed method to prevent device-associated infection is shockwave sterilization and therapy. A shockwave is a high-energy wave causing a sudden change in temperature, pressure and density in the medium. This study investigates the potential disruption of bacterial biofilms by electrohydraulic shockwaves.
Methods:
E. coli and S. aureus biofilms were grown on polystyrene plates. Biofilms were treated with shockwaves (0.19mJ/mm2, 300 pulses, 3 Hz) in a water bath and compared with those treated with Vancomycin. Cell viability was determined through XTT/menadione absorbance and specific biofilm formation through crystal violet absorbance.
Results:
Current testing has shown that electrohydraulic shockwaves have a bacteriostatic effect on biofilms. Other finding show potential for shockwaves to increase bacterial susceptibility to lower levels of antibiotics.
Conclusions:
Device-associated infections are a serious threat to patients' health. The diminishing effectiveness of antibiotics in treating and preventing infections along with evolution of mass resistance in bacteria have given rise to the term "post-antibiotic era." The better understanding of electrohydraulic shockwaves bacteriostatic effect could lead to more effective treatments for antibiotic resistant bacteria such as S. aureus.
Faculty Advisor: Kopp, Olga (Utah Valley University, Biology); Slezak, Cyrill (Utah Valley University, Physics)
Purpose:
This study evaluates the effect of electrohydraulic shockwaves on Staphylococcus aureus biofilms. This system could be a great alternative to the use of antibiotics, and potentially life-saving technology that could save billions of dollars.
Background:
The rise of antibiotic-resistant bacteria is a global threat. Staphylococcus aureus is typically harmless, but this gram-positive species has become highly resistant and extremely pathogenic. Strains like MRSA and VRSA have the highest rate of drug resistance and are the leading cause of chronic bacterial infections via bacterial biofilms on medical devices. Biofilms are an aggregation of microbes that excrete an extracellular matrix providing an ideal environment for gene exchange and quorum sensing. Their complexity hinders the diffusion of antimicrobials. A proposed method to prevent device-associated infection is shockwave sterilization and therapy. A shockwave is a high-energy wave causing a sudden change in temperature, pressure and density in the medium. This study investigates the potential disruption of bacterial biofilms by electrohydraulic shockwaves.
Methods:
E. coli and S. aureus biofilms were grown on polystyrene plates. Biofilms were treated with shockwaves (0.19mJ/mm2, 300 pulses, 3 Hz) in a water bath and compared with those treated with Vancomycin. Cell viability was determined through XTT/menadione absorbance and specific biofilm formation through crystal violet absorbance.
Results:
Current testing has shown that electrohydraulic shockwaves have a bacteriostatic effect on biofilms. Other finding show potential for shockwaves to increase bacterial susceptibility to lower levels of antibiotics.
Conclusions:
Device-associated infections are a serious threat to patients' health. The diminishing effectiveness of antibiotics in treating and preventing infections along with evolution of mass resistance in bacteria have given rise to the term "post-antibiotic era." The better understanding of electrohydraulic shockwaves bacteriostatic effect could lead to more effective treatments for antibiotic resistant bacteria such as S. aureus.
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Effects of Exercise on Subjective Feelings of Fatigue: A Randomized Crossover Study
Savage, Ryland; Stevens, Andrew; Hicks, Joseph (Brigham Young University)
Faculty Advisor: Bailey, Bruce (Brigham Young University, Exercise Science)
Purpose: This study examined the effect of different intensities of exercise on subjective feelings of fatigue both immediately following exercise and after 60 minutes of intense cognitive testing in men and woman.
Methods: These results come from a secondary analysis of a larger randomized crossover study examining the different levels of exercise intensity on cognitive performance. We recruited 228 men and woman to participate in the study. Each participant was tested after three exercise conditions: moderate (35% VO2 max), vigorous (70% VO2 max), and sedentary (no exercise). Each exercise condition was randomized and each test was separated by one week. After each 40-minute exercise condition, we administered a visual analog scale to evaluate subjective feelings of fatigue. This assessment of fatigue was delivered before treatment, immediately after treatment and then again after a variety of cognitive tasks were performed for the duration of one hour.
Results: For the sedentary condition, feelings of fatigue increased after the 40-minute intervention (p<0.001) and decreased after 60 minutes of cognitive work but remaining elevated compared to baseline (p<0.01). For the moderate condition, feelings of fatigue did not change immediately after exercise (p=0.063) but then increased after 60 minutes of cognitive work (p<0.001). For vigorous condition, feelings of fatigue increased after exercise(p<0.001) and remained elevated after performing the cognitive tasks (p=0.163). Following the 40-minute intervention, fatigue was highest after the sedentary condition, followed by the vigorous condition and did not change after completion of the moderate condition. Following 60 minutes of cognitive work, fatigue was highest in the vigorous condition (p<0.001) and did not differ between the sedentary and moderate conditions (p=0.063).
Conclusion: The results of this study show that moderate exercise has no significant impact on feelings of fatigue but exercise at a higher intensity and being sedentary increase fatigue. Doing cognitive work increases fatigue if exercise precedes the tasks but being sedentary beforehand decreases feelings of fatigue during cognitive tasks. This suggests cognitive work is usually draining, but if performed after sedentary or low activity states such as watching TV, cognitive work will be invigorating and help feel more alert.
Faculty Advisor: Bailey, Bruce (Brigham Young University, Exercise Science)
Purpose: This study examined the effect of different intensities of exercise on subjective feelings of fatigue both immediately following exercise and after 60 minutes of intense cognitive testing in men and woman.
Methods: These results come from a secondary analysis of a larger randomized crossover study examining the different levels of exercise intensity on cognitive performance. We recruited 228 men and woman to participate in the study. Each participant was tested after three exercise conditions: moderate (35% VO2 max), vigorous (70% VO2 max), and sedentary (no exercise). Each exercise condition was randomized and each test was separated by one week. After each 40-minute exercise condition, we administered a visual analog scale to evaluate subjective feelings of fatigue. This assessment of fatigue was delivered before treatment, immediately after treatment and then again after a variety of cognitive tasks were performed for the duration of one hour.
Results: For the sedentary condition, feelings of fatigue increased after the 40-minute intervention (p<0.001) and decreased after 60 minutes of cognitive work but remaining elevated compared to baseline (p<0.01). For the moderate condition, feelings of fatigue did not change immediately after exercise (p=0.063) but then increased after 60 minutes of cognitive work (p<0.001). For vigorous condition, feelings of fatigue increased after exercise(p<0.001) and remained elevated after performing the cognitive tasks (p=0.163). Following the 40-minute intervention, fatigue was highest after the sedentary condition, followed by the vigorous condition and did not change after completion of the moderate condition. Following 60 minutes of cognitive work, fatigue was highest in the vigorous condition (p<0.001) and did not differ between the sedentary and moderate conditions (p=0.063).
Conclusion: The results of this study show that moderate exercise has no significant impact on feelings of fatigue but exercise at a higher intensity and being sedentary increase fatigue. Doing cognitive work increases fatigue if exercise precedes the tasks but being sedentary beforehand decreases feelings of fatigue during cognitive tasks. This suggests cognitive work is usually draining, but if performed after sedentary or low activity states such as watching TV, cognitive work will be invigorating and help feel more alert.
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Effects of Parenting Styles on Child Delinquency and Bullying
Leavitt, Amanda; Harris, Heather; Szanter, Kathryn; Stokes, Alexis (Weber State University)
Faculty Advisor: Dunn, Charles (Weber State University, Child and Family Studies); Hubler, Daniel (Weber State University, Child and Family Studies); Osai, Keith (Weber State University, Child and Family Studies)
How a child is parented can influence their success socially, mentally, physically, and emotionally. Agarwal (2017) states that "Parenting plays the most important part in any child's life, it can help a child by teaching them to deal with people, situations and adapt to a better living standard" (p.1335). Parents help form worldviews, shape a child's attitude towards personal achievement, teach how to approach adversity in life, and satisfy their needs whether it be psychological and/or physiological. Much is known about how the base of one's childhood is built upon one's primary caregivers' parenting style, however, less is known about the intergenerational transmission of parenting philosophies.
The current study was designed to assess how parenting styles affect child delinquency and bullying. Through social media invitations and snowball sampling, 200 people accepted invitations to participate in an online survey incorporating both open-ended and quantitative items. Participants were asked to reflect on how they were parented and then state what they have maintained or changed in their own parenting styles. Considering the rich nature of the responses to the qualitative items, a corroborative narrative came together through personal stories.
Through thematic analysis, several themes emerged. When participants reported being parented with: open communication, flexibility, love, trust, and higher expectations they wanted to keep those traits. When asked what participants carried on from their parents one participant stated, "Cherish the family and the moments we have together." Additionally, 28% (n = 113) of our participants shared the importance of spending quality time together. However, when participants' parents did not display those traits, most participants indicated that similar traits, namely communication, flexibility, love, quality time, trust, and higher expectations were desired in their homes. The findings from the current study can be used to inform future parenting research assessing influence on subsequent generations.
Faculty Advisor: Dunn, Charles (Weber State University, Child and Family Studies); Hubler, Daniel (Weber State University, Child and Family Studies); Osai, Keith (Weber State University, Child and Family Studies)
How a child is parented can influence their success socially, mentally, physically, and emotionally. Agarwal (2017) states that "Parenting plays the most important part in any child's life, it can help a child by teaching them to deal with people, situations and adapt to a better living standard" (p.1335). Parents help form worldviews, shape a child's attitude towards personal achievement, teach how to approach adversity in life, and satisfy their needs whether it be psychological and/or physiological. Much is known about how the base of one's childhood is built upon one's primary caregivers' parenting style, however, less is known about the intergenerational transmission of parenting philosophies.
The current study was designed to assess how parenting styles affect child delinquency and bullying. Through social media invitations and snowball sampling, 200 people accepted invitations to participate in an online survey incorporating both open-ended and quantitative items. Participants were asked to reflect on how they were parented and then state what they have maintained or changed in their own parenting styles. Considering the rich nature of the responses to the qualitative items, a corroborative narrative came together through personal stories.
Through thematic analysis, several themes emerged. When participants reported being parented with: open communication, flexibility, love, trust, and higher expectations they wanted to keep those traits. When asked what participants carried on from their parents one participant stated, "Cherish the family and the moments we have together." Additionally, 28% (n = 113) of our participants shared the importance of spending quality time together. However, when participants' parents did not display those traits, most participants indicated that similar traits, namely communication, flexibility, love, quality time, trust, and higher expectations were desired in their homes. The findings from the current study can be used to inform future parenting research assessing influence on subsequent generations.
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Differences in anthropometric characteristics between intermediate and high level climbers
Miriam Reber; Ethan Del Toro; Holden Lyman; Weston Hargis; Travis Ficklin (Dixie State University)
Faculty Advisor: Ficklin, Travis (Dixie State University, Health and Human Performance)
In recent years sport climbing has increased in popularity, and with that have come questions regarding what factors improve performance. While multiple studies have examined the effect of anthropometric factors on injury in climbing, few have examined their relationship with climbing performance. Therefore, the purpose of this study is to compare the anthropometric measures of high-level to intermediate level climbers to determine if certain body types, or dimensions, lend themselves to better performance in climbing.
Twenty-one subjects were divided into an intermediate (INT) or high-level (HL) group based on highest graded climb achieved. Various measures including height, limb lengths, and experience. These were compared between the two groups using t-tests.
Significant differences were found in the number of days climbed per week (HL 2.9±1.1, INT 2.17±0.6, p = 0.03), and the ratios of upper arm to full arm length (HL 0.44±0.05, INT 0.41±0.02, p=0.03), and trunk to height (HL 0.26±0.03, INT 0.23±0.01, p=0.01). There were also statistical trends towards years of experience (HL 5.46±3.8, INT 3.39±1.8, p = 0.06), and trunk length (HL 44.96±7.1cm, INT 41.28±2.7cm, p=0.06).
The current data suggest that for the levels of climbing examined (5.9-5.13b on the Yosemite Decimal Scale) a greater trunk to height ratio, greater upper arm to arm length ratio, and increased frequency of practice (a variable within the climber's control) may positively impact climbing ability.
Faculty Advisor: Ficklin, Travis (Dixie State University, Health and Human Performance)
In recent years sport climbing has increased in popularity, and with that have come questions regarding what factors improve performance. While multiple studies have examined the effect of anthropometric factors on injury in climbing, few have examined their relationship with climbing performance. Therefore, the purpose of this study is to compare the anthropometric measures of high-level to intermediate level climbers to determine if certain body types, or dimensions, lend themselves to better performance in climbing.
Twenty-one subjects were divided into an intermediate (INT) or high-level (HL) group based on highest graded climb achieved. Various measures including height, limb lengths, and experience. These were compared between the two groups using t-tests.
Significant differences were found in the number of days climbed per week (HL 2.9±1.1, INT 2.17±0.6, p = 0.03), and the ratios of upper arm to full arm length (HL 0.44±0.05, INT 0.41±0.02, p=0.03), and trunk to height (HL 0.26±0.03, INT 0.23±0.01, p=0.01). There were also statistical trends towards years of experience (HL 5.46±3.8, INT 3.39±1.8, p = 0.06), and trunk length (HL 44.96±7.1cm, INT 41.28±2.7cm, p=0.06).
The current data suggest that for the levels of climbing examined (5.9-5.13b on the Yosemite Decimal Scale) a greater trunk to height ratio, greater upper arm to arm length ratio, and increased frequency of practice (a variable within the climber's control) may positively impact climbing ability.
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Dopamine 2 receptors display rapid adaptation in response to acute ethanol administration
LeBaron, Josh; Obray, J Daniel; Steffensen, Scott (Brigham Young University)
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences, Psychology)
Dopamine neurons in the substancia nigra (SN) and ventral tegmental area (VTA) are inhibited by dopamine (DA) via dopamine 2 receptor (D2R) activation. D2R expression in the striatum is a well-known biomarker for brain DA levels, drug abuse, and dependence. Markers of D2R expression are not only detectable in the brain but are also expressed in peripheral tissues, including the blood, where DA appears to play a pivotal role in mediating communication between the nervous and immune systems. Alteration in lympocytic D2Rs are seen in chronic psychostimulant use (Ersche et al., 2011). For the last two decades it has been generally accepted that D2R expression in the striatum is reduced by chronic ethanol use. Additionally, research has suggested that these changes mirror changes in DA levels in the striatum and predict risk of relapse. Despite this, the timecourse over which these changes occur has not been demonstrated. Further, recent research has challenged both the reduction in D2R expression produced by chronic ethanol and the mechanism whereby it was believed to be produced (reductions in striatal DA levels). This research has suggested that alterations in D2R levels may be due to disruption of sleep in individuals with substance use disorders. Here we demonstrate that dopamine 2 receptor expression in the brain and the blood follows brain and blood dopamine levels on a timescale of minutes to hours following an acute dose of ethanol. This research provides evidence for transient changes in D2R expression following a single dose of ethanol.
Faculty Advisor: Steffensen, Scott (Family, Home, and Social Sciences, Psychology)
Dopamine neurons in the substancia nigra (SN) and ventral tegmental area (VTA) are inhibited by dopamine (DA) via dopamine 2 receptor (D2R) activation. D2R expression in the striatum is a well-known biomarker for brain DA levels, drug abuse, and dependence. Markers of D2R expression are not only detectable in the brain but are also expressed in peripheral tissues, including the blood, where DA appears to play a pivotal role in mediating communication between the nervous and immune systems. Alteration in lympocytic D2Rs are seen in chronic psychostimulant use (Ersche et al., 2011). For the last two decades it has been generally accepted that D2R expression in the striatum is reduced by chronic ethanol use. Additionally, research has suggested that these changes mirror changes in DA levels in the striatum and predict risk of relapse. Despite this, the timecourse over which these changes occur has not been demonstrated. Further, recent research has challenged both the reduction in D2R expression produced by chronic ethanol and the mechanism whereby it was believed to be produced (reductions in striatal DA levels). This research has suggested that alterations in D2R levels may be due to disruption of sleep in individuals with substance use disorders. Here we demonstrate that dopamine 2 receptor expression in the brain and the blood follows brain and blood dopamine levels on a timescale of minutes to hours following an acute dose of ethanol. This research provides evidence for transient changes in D2R expression following a single dose of ethanol.
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Determining the Function and Structure of Cms1, A Type V CRISPR Effector Endonuclease
Tonks, Adam; Domgaard, Hannah; Crowley, Valerie; Neumann, Gina; Keiser, Dylan; Metcalf, Josie; Guo, Hongjie; Zhou, Yi; Begemann, Mathew; Taylor, David; Jackson, Ryan (Utah State University)
Faculty Advisor: Jackson, Ryan (College of Science, Chemistry and Biochemistry)
Cms1 is a Type V endonuclease that contains a novel domain, shares little sequence homology with other Type V endonucleases, and in some organisms, is found near genes coding for other single-subunit nucleases. Studies in rice (Oryza sativa) have shown Cms1 capable of RNA-directed DNA editing. However, the mechanism of DNA cleavage remains unknown.
Here we present biochemical data that demonstrate Cms1 from Sulfuricurvum processes an RNA guide and binds/cleaves single- and double-stranded DNA through RuvC nuclease motifs. 2-D classification of structures obtained by negative staining electron microscopy show a major conformational change between SuCms1 bound and unbound to an RNA guide. The predicted global structure appears to be different than those reported for other Type V effectors. These data provide for a greater understanding of Type V endonucleases and may provide an alternative tool for genome editing applications.
Faculty Advisor: Jackson, Ryan (College of Science, Chemistry and Biochemistry)
Cms1 is a Type V endonuclease that contains a novel domain, shares little sequence homology with other Type V endonucleases, and in some organisms, is found near genes coding for other single-subunit nucleases. Studies in rice (Oryza sativa) have shown Cms1 capable of RNA-directed DNA editing. However, the mechanism of DNA cleavage remains unknown.
Here we present biochemical data that demonstrate Cms1 from Sulfuricurvum processes an RNA guide and binds/cleaves single- and double-stranded DNA through RuvC nuclease motifs. 2-D classification of structures obtained by negative staining electron microscopy show a major conformational change between SuCms1 bound and unbound to an RNA guide. The predicted global structure appears to be different than those reported for other Type V effectors. These data provide for a greater understanding of Type V endonucleases and may provide an alternative tool for genome editing applications.
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Effect of Gender on Shear Wave Elastography and Cross Sectional Area of the Gastrocnemius in Senior Athletes.
Hutchison, Cortland; Preece, J. Caleb; Seibold, Tanner; Feland, J. Brent (Brigham Young University)
Faculty Advisor: Feland, Brent (Life Sciences, Exercise Science)
BACKGROUND: Muscle morphology changes with age and the fibrous/fatty infiltration should affect the overall stiffness of aging muscle. However, little info intrinsic stiffness as measured by SWE is available on aging muscle and the effect of gender using this measurement is not clear.
PURPOSE: This study aimed to determine how gender affects cross sectional area (CSA) and SWE of both the medial and lateral heads of the gastrocnemius muscle of the dominant leg in active older athletes participating in the HuntsmanWorld Senior Games.
METHODS: Data was collected from 116 volunteers (participants in the Huntsman World Senior Games) in St. George, Utah, 2019. Subjects (62 males: mean age = 68.9 ± 7.8 yrs, Ht = 177.4 ± 8.1 cm, Wt= 85.4±20 kg; 54 females: mean age = 66.9 ± 8.5 yrs, Ht =164.4 ± 7.2 cm, Wt= 69.8±18 kg) signed an approved consent form and then lay prone on a treatment table for ultrasonic measurement of both CSA and SWE of both heads of the gastrocnemius.
ANALYSIS: All data were analyzed a generalized linear model analysis using SPSS ver25 comparing CSA and SWE of both medial and lateral gastrocnemius heads by gender with age, height and weight as covariates.
RESULTS & CONCLUSION: We hypothesized that gender would affect both CSA and SWE with males exhibiting increases in both CSA and SWE values. We found a significant difference in CSA of both the medial and lateral gastroc (p=.000 for both) between genders, but no significant difference in lateral gastroc SWE (p=.337) or medial gastroc SWE (p=.320). Both age (p=.004) and weight (p=.000) were also found to significantly affect CSA and SWE between genders. The larger CSA values for men in this study may be more of a function of overall body size and weight since both populations are active athletes.
Faculty Advisor: Feland, Brent (Life Sciences, Exercise Science)
BACKGROUND: Muscle morphology changes with age and the fibrous/fatty infiltration should affect the overall stiffness of aging muscle. However, little info intrinsic stiffness as measured by SWE is available on aging muscle and the effect of gender using this measurement is not clear.
PURPOSE: This study aimed to determine how gender affects cross sectional area (CSA) and SWE of both the medial and lateral heads of the gastrocnemius muscle of the dominant leg in active older athletes participating in the HuntsmanWorld Senior Games.
METHODS: Data was collected from 116 volunteers (participants in the Huntsman World Senior Games) in St. George, Utah, 2019. Subjects (62 males: mean age = 68.9 ± 7.8 yrs, Ht = 177.4 ± 8.1 cm, Wt= 85.4±20 kg; 54 females: mean age = 66.9 ± 8.5 yrs, Ht =164.4 ± 7.2 cm, Wt= 69.8±18 kg) signed an approved consent form and then lay prone on a treatment table for ultrasonic measurement of both CSA and SWE of both heads of the gastrocnemius.
ANALYSIS: All data were analyzed a generalized linear model analysis using SPSS ver25 comparing CSA and SWE of both medial and lateral gastrocnemius heads by gender with age, height and weight as covariates.
RESULTS & CONCLUSION: We hypothesized that gender would affect both CSA and SWE with males exhibiting increases in both CSA and SWE values. We found a significant difference in CSA of both the medial and lateral gastroc (p=.000 for both) between genders, but no significant difference in lateral gastroc SWE (p=.337) or medial gastroc SWE (p=.320). Both age (p=.004) and weight (p=.000) were also found to significantly affect CSA and SWE between genders. The larger CSA values for men in this study may be more of a function of overall body size and weight since both populations are active athletes.
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Effects of Flavanols on β-cell proliferation.
Tessem, Jeffery; Lloyd, Trevor; Brown, Nathan (Brigham Young University)
Faculty Advisor: Tessem, Jeffery (Brigham Young University; Nutrition, Dietetics and Food Science)
Diabetes is a global epidemic affecting millions of people. The total estimated cost of diabetes in the U.S. during 2017 was 327 billion dollars [1]. Diabetes is characterized by the loss of pancreatic β-cell function which is caused by an autoimmune disorder in Type 1 diabetes or insulin resistance and β-cell exhaustion in Type 2 (T2D) diabetes. Lifestyle changes in diet are beneficial in treating T2D. Phytochemicals are commonly utilized in these diets, and recent studies show diets high in flavanols exert beneficial bioactivity for β-cells. While flavanols demonstrate beneficial effects on β-cells, these flavanols are rarely observed in circulation, suggesting a necessary intermediate step. Flavanols are metabolized by gut bacteria to smaller metabolites that are absorbable. We hypothesize that these gut bacteria derived flavanol metabolites cross the gut and affect β-cell function. We have fed rats catechin supplemented or unsupplemented diets and collected urine as a means to isolate all absorbable gut flavanol metabolites. Here we present the effects of these absorbed metabolites on β-cell proliferation. This study begins to explain the mechanism by which flavanols exert their beneficial effect on glucose metabolism through the β-cell.
Faculty Advisor: Tessem, Jeffery (Brigham Young University; Nutrition, Dietetics and Food Science)
Diabetes is a global epidemic affecting millions of people. The total estimated cost of diabetes in the U.S. during 2017 was 327 billion dollars [1]. Diabetes is characterized by the loss of pancreatic β-cell function which is caused by an autoimmune disorder in Type 1 diabetes or insulin resistance and β-cell exhaustion in Type 2 (T2D) diabetes. Lifestyle changes in diet are beneficial in treating T2D. Phytochemicals are commonly utilized in these diets, and recent studies show diets high in flavanols exert beneficial bioactivity for β-cells. While flavanols demonstrate beneficial effects on β-cells, these flavanols are rarely observed in circulation, suggesting a necessary intermediate step. Flavanols are metabolized by gut bacteria to smaller metabolites that are absorbable. We hypothesize that these gut bacteria derived flavanol metabolites cross the gut and affect β-cell function. We have fed rats catechin supplemented or unsupplemented diets and collected urine as a means to isolate all absorbable gut flavanol metabolites. Here we present the effects of these absorbed metabolites on β-cell proliferation. This study begins to explain the mechanism by which flavanols exert their beneficial effect on glucose metabolism through the β-cell.
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